Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Reverse (-)

16857879 .. 16859998

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G251700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCGGACGAGAAGAGTAAGATACTGATAATTGGAGCCACAGGGTATCTTGGTAAATTCATGGTGAAAGCAAGCCTTTCCTTGGGCCACCCAACCTATGCCTACGTTCGGCCAATCAAACCCAGCAACGACTCTTCCAGGCTTGAGCTGCTCAAAGAATTTGAAGCCATGGGGCTCACCATCTTCCAAGGTGAACTGGATGAGCATGAAAAGCTAGTCGCGGCTTTAAAACAAGTTGATGTTGTAATATCTACGCTGCCTATCCCTCAACTTCTTGAACAGTTCAAAATTATCAATGCCATCAAAGATGCCGGCAATATAAAGAGATTTATCCCATCAGAGTTTGGAAATGATCCAGCAAGAGAAAGTACACTGGCGCCTTTTGAGGCTATCCATGAGGATAGAAGGAAGATTAGAAGGGCTACAGAAGCAGCAGAAATTCCCCACACTTATGTATGTGGAAACACATTTGGATCCTATTTTGTTAGTTATTTGCTTAATCCTCACGAGGAAAGGGACGAAGTCGTTGTTTATGGCACTGGTGAAGCCAAAGTCGTGATGAATTACGAGCAAGACATAGCAGCCTACACAATAAAAGCAGCAACAGATCCAAGGGCAGCCAACAATACCATCACTTGTCGACCACAAGGAAACATTATATCTCAGTTGGATTTAATTTCTCTTTGGGAGAAGAAGACAGGACGCACTCTTGAAAGGGTTTATGTCTCCGCACAACAACTGATTGAATACTCAAAGACACTCCCTCACGCTGACAATGTACGTGCGTCCATTGCCCACGATATATTCGTCGTAGGTCAAGTTTATGAATTCACAGAAAACAACCTAGAGGCCTCCAAGTTATATCCGGAATACAAGTACACTTCCATTGATAGCTTCCTTGACATTTGCTTGGTTGATCCTCCCAAGCCAAAATTAGCAGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

317

Amino Acids

35.37

Weight (kDa)

5.61

Isoelectric Point (pI)

27.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	643
AccII	CGCG	1 cut(s)	224
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	2 cut(s)	224, 732
AclWI	GGATC	5 cut(s)	350, 471, 484, 605, 914
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	4 cut(s)	59, 161, 441, 830
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	3 cut(s)	373, 783, 881
AfiI	CCNNNNNNNGG	2 cut(s)	85, 111
AgsI	TTSAA	5 cut(s)	167, 281, 289, 716, 749
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	3 cut(s)	151, 217, 897
AluI	AGCT	3 cut(s)	151, 217, 897
Alw26I	GTCTC	1 cut(s)	733
AlwI	GGATC	5 cut(s)	350, 471, 484, 605, 914
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	3 cut(s)	88, 113, 852
ApeKI	GCWGC	7 cut(s)	151, 259, 434, 584, 602, 620, 941
ApoI	RAATTY	4 cut(s)	59, 161, 441, 830
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	4 cut(s)	79, 172, 206, 557
BamHI	GGATCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	180
BauI	CACGAG	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	704
BbvI	GCAGC	6 cut(s)	138, 246, 446, 596, 614, 632
BccI	CCATC	4 cut(s)	191, 311, 346, 641
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	733
BfaI	CTAG	2 cut(s)	218, 848
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	8 cut(s)	152, 225, 260, 435, 585, 603, 621, 942
BlsI	GCNGC	8 cut(s)	153, 226, 261, 436, 586, 604, 622, 943
Bme1390I	CCNGG	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	3 cut(s)	40, 381, 478
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	785
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	4 cut(s)	84, 171, 190, 614
BsaWI	WCCGGW	1 cut(s)	868
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 111
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	3 cut(s)	204, 381, 547
Bse3DI	GCAATG	1 cut(s)	792
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	4 cut(s)	84, 171, 190, 614
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	85, 111
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	3 cut(s)	204, 381, 547
BseXI	GCAGC	6 cut(s)	138, 246, 446, 596, 614, 632
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	3 cut(s)	90, 115, 854
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	2 cut(s)	315, 869
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	85, 111
BsmAI	GTCTC	1 cut(s)	733
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	90, 115, 854
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	868
Bsp143I	GATC	4 cut(s)	355, 476, 610, 919
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	224, 732
BspANI	GGCC	3 cut(s)	90, 115, 854
BspCNI	CTCAG	1 cut(s)	679
BspEI	TCCGGA	1 cut(s)	868
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	3 cut(s)	40, 381, 478
BspPI	GGATC	5 cut(s)	350, 471, 484, 605, 914
BspT107I	GGYRCC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	792
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	3 cut(s)	204, 381, 547
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	84, 171, 190, 614
BssMI	GATC	4 cut(s)	355, 476, 610, 919
BssNI	GRCGYC	1 cut(s)	380
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	4 cut(s)	84, 171, 190, 614
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	2 cut(s)	11, 142
BstACI	GRCGYC	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	76, 316
BstDEI	CTNAG	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	4 cut(s)	358, 479, 613, 922
BstMAI	GTCTC	1 cut(s)	733
BstMBI	GATC	4 cut(s)	355, 476, 610, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 214, 431, 794
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	6 cut(s)	138, 246, 446, 596, 614, 632
BstV2I	GAAGAC	1 cut(s)	704
BstX2I	RGATCY	2 cut(s)	476, 610
BstYI	RGATCY	2 cut(s)	476, 610
BsuRI	GGCC	3 cut(s)	90, 115, 854
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	374, 540
Cac8I	GCNNGC	2 cut(s)	76, 316
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	2 cut(s)	714, 777
Csp6I	GTAC	3 cut(s)	372, 782, 880
CviAII	CATG	4 cut(s)	64, 172, 209, 398
CviQI	GTAC	3 cut(s)	372, 782, 880
DdeI	CTNAG	1 cut(s)	666
DinI	GGCGCC	1 cut(s)	381
DpnI	GATC	4 cut(s)	357, 478, 612, 921
DpnII	GATC	4 cut(s)	355, 476, 610, 919
DraI	TTTAAA	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	2 cut(s)	11, 142
EarI	CTCTTC	2 cut(s)	11, 142
Eco130I	CCWWGG	4 cut(s)	84, 171, 190, 614
Eco147I	AGGCCT	1 cut(s)	854
Eco24I	GRGCYC	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	4 cut(s)	84, 171, 190, 614
EcoT38I	GRGCYC	1 cut(s)	180
EgeI	GGCGCC	1 cut(s)	381
EheI	GGCGCC	1 cut(s)	381
ErhI	CCWWGG	4 cut(s)	84, 171, 190, 614
FaeI	CATG	4 cut(s)	67, 175, 212, 401
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	4 cut(s)	63, 171, 208, 397
FblI	GTMKAC	1 cut(s)	643
Fnu4HI	GCNGC	8 cut(s)	152, 225, 260, 435, 585, 603, 621, 942
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	8 cut(s)	152, 225, 260, 435, 585, 603, 621, 942
FspBI	CTAG	2 cut(s)	218, 848
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	8 cut(s)	152, 225, 260, 435, 585, 603, 621, 942
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	90, 115, 854
HapII	CCGG	2 cut(s)	315, 869
HgaI	GACGC	2 cut(s)	714, 777
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	4 cut(s)	67, 175, 212, 401
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	644
HindII	GTYRAC	1 cut(s)	644
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	2 cut(s)	315, 869
HphI	GGTGA	4 cut(s)	79, 172, 206, 557
Hpy166II	GTNNAC	4 cut(s)	197, 374, 644, 882
Hpy188I	TCNGA	2 cut(s)	10, 343
Hpy188III	TCNNGA	5 cut(s)	278, 509, 559, 713, 869
Hpy8I	GTNNAC	4 cut(s)	197, 374, 644, 882
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	2 cut(s)	402, 414
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	108, 784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 214, 431, 794
HpyF3I	CTNAG	1 cut(s)	666
HpySE526I	ACGT	2 cut(s)	108, 784
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	67, 175, 212, 401
HspAI	GCGC	1 cut(s)	380
KasI	GGCGCC	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	868
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	355, 476, 610, 919
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	6 cut(s)	138, 246, 446, 596, 614, 632
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	218, 848
MaeII	ACGT	2 cut(s)	108, 784
MalI	GATC	4 cut(s)	357, 478, 612, 921
MboI	GATC	4 cut(s)	355, 476, 610, 919
MboII	GAAGA	6 cut(s)	28, 129, 178, 424, 706, 709
MflI	RGATCY	2 cut(s)	476, 610
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	9 cut(s)	33, 59, 161, 291, 441, 565, 678, 830, 935
Mly113I	GGCGCC	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	9 cut(s)	279, 382, 394, 505, 516, 777, 844, 865, 933
MroI	TCCGGA	1 cut(s)	868
MroNI	GCCGGC	1 cut(s)	314
MseI	TTAA	3 cut(s)	230, 501, 677
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	2 cut(s)	315, 869
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	151, 214, 431, 794
NaeI	GCCGGC	1 cut(s)	316
NarI	GGCGCC	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	355, 476, 610, 919
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	4 cut(s)	67, 175, 212, 401
NlaIV	GGNNCC	3 cut(s)	40, 381, 478
PceI	AGGCCT	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	1 cut(s)	807
PdiI	GCCGGC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	8 cut(s)	153, 226, 261, 436, 586, 604, 622, 943
PleI	GAGTC	1 cut(s)	128
PluTI	GGCGCC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	785
Psp6I	CCWGG	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	3 cut(s)	40, 381, 478
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	2 cut(s)	476, 610
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	3 cut(s)	373, 783, 881
RsaNI	GTAC	3 cut(s)	372, 782, 880
RseI	CAYNNNNRTG	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	642
SaqAI	TTAA	3 cut(s)	230, 501, 677
SatI	GCNGC	8 cut(s)	152, 225, 260, 435, 585, 603, 621, 942
Sau3AI	GATC	4 cut(s)	355, 476, 610, 919
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	101, 111, 153, 196, 219, 787, 820, 849, 899
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	426
SfoI	GGCGCC	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	9 cut(s)	33, 59, 161, 291, 441, 565, 678, 830, 935
SseBI	AGGCCT	1 cut(s)	854
SsiI	CCGC	2 cut(s)	224, 732
SspDI	GGCGCC	1 cut(s)	379
SspMI	CTAG	2 cut(s)	218, 848
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	4 cut(s)	84, 171, 190, 614
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	2 cut(s)	111, 787
TaqI	TCGA	1 cut(s)	643
TasI	AATT	9 cut(s)	33, 59, 161, 291, 441, 565, 678, 830, 935
TatI	WGTACW	2 cut(s)	371, 879
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	230, 501, 677
Tru9I	TTAA	3 cut(s)	230, 501, 677
TscAI	CASTG	2 cut(s)	381, 547
TseI	GCWGC	7 cut(s)	151, 259, 434, 584, 602, 620, 941
TspDTI	ATGAA	4 cut(s)	52, 225, 578, 843
TspRI	CASTG	2 cut(s)	381, 547
Tth111I	GACNNNGTC	1 cut(s)	524
XapI	RAATTY	4 cut(s)	59, 161, 441, 830
XmiI	GTMKAC	1 cut(s)	643
XspI	CTAG	2 cut(s)	218, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.