Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

55321135 .. 55324521

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTGGAGAAAAGAGCAAGATACTGATAATTGGAAGCACAGGGCACCTTGGCCAGTACCTGGTGAAGGCAAGCGTTTCTTTGGGACATCCAACCTATGCTTATGTGCGACCAATCAAACCCACCACCGATTCTTCAAAGCTTCAGTTGCACAAGGAGTTTGAAGCCATGGGACTCACTCTTTTTGAAGGTGAACTGGATGATCATGAAAAGCTAGTGCGGGCACTTCAAGTAGTTGACATTGTAATTTCTACTCCTCAACATCTTGAACAGCTCAAAATTATCAAGGCTATCAAAGAAGCAGGAAATATAAAGAGATTCTTTCCTTCAGAATTCGGATTTGAAGCAGATAGAGCAAGTGGGCTGCCACCTTTCGAGGCTATACATGTGAATAGAAGGAAGATTAGAAGGGCAACAGAAGCAGCAGGAATTTCCTACACTTACGTGTCTGCAAACACTTTTGCTTCTTACTTTGTTGATTATTTATTTCATCCTCATGAGAAACGCGAGGAAGTAATTGTTTATGGCAGTGGTGAAGCTAAGGACGTGTTAAACTATGAGGAAGATGTGGCAGCTTACACCATAAGAGCAGCAACAGATCCGAGGGCAGCCAACCGGATCGTGATATGTAGACTGCAAGAAAACATTGTATCTCAATTGAATTTGATATCAGCATGGGAGAAAAAGATCCATGTCCCAGAACAAGAAATTATAGAGCTCTCTAATACCCTCGCTCACCCAGACAACGTACGTGTATCGATCCTTCACAGCATATTCATCAAGGGGGAACAGATGAACTTTGAACTCACAGACAACGACCTCGAGGCCTCCAAGTTATATCCCGATTATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

285

Amino Acids

32.07

Weight (kDa)

6.02

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 284	1.7e-48	NmrA-like family
NAD_binding_10	PF13460	12 - 201	7.9e-09	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	849
AbsI	CCTCGAGG	1 cut(s)	821
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	1 cut(s)	507
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	4 cut(s)	593, 626, 682, 754
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	332, 429, 661
AcuI	CTGAAG	2 cut(s)	128, 312
AfaI	GTAC	2 cut(s)	59, 750
AfiI	CCNNNNNNNGG	2 cut(s)	61, 67
AflIII	ACRYGT	4 cut(s)	385, 444, 546, 751
AgsI	TTSAA	8 cut(s)	138, 164, 188, 230, 269, 344, 661, 803
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	60
AleI	CACNNNNGTG	1 cut(s)	443
AluBI	AGCT	6 cut(s)	142, 214, 274, 539, 575, 718
AluI	AGCT	6 cut(s)	142, 214, 274, 539, 575, 718
Alw21I	GWGCWC	1 cut(s)	720
AlwI	GGATC	4 cut(s)	593, 626, 682, 754
AlwNI	CAGNNNCTG	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	821
AoxI	GGCC	2 cut(s)	52, 825
ApeKI	GCWGC	5 cut(s)	364, 422, 572, 590, 608
ApoI	RAATTY	3 cut(s)	332, 429, 661
AsuHPI	GGTGA	4 cut(s)	76, 203, 545, 728
AvaI	CYCGRG	1 cut(s)	821
BaeGI	GKGCMC	2 cut(s)	48, 226
BalI	TGGCCA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	720
BarI	GAAGNNNNNNTAC	2 cut(s)	747, 779
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	5 cut(s)	351, 434, 584, 602, 620
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	5 cut(s)	365, 423, 573, 591, 609
BlsI	GCNGC	5 cut(s)	366, 424, 574, 592, 610
Bme1390I	CCNGG	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	821
BmgBI	CACGTC	1 cut(s)	547
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	540
Bsa29I	ATCGAT	1 cut(s)	758
BsaAI	YACGTR	2 cut(s)	445, 752
BsaJI	CCNNGG	3 cut(s)	49, 168, 602
BsaWI	WCCGGW	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 67
Bse1I	ACTGG	2 cut(s)	55, 201
BseBI	CCWGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	758
BseDI	CCNNGG	3 cut(s)	49, 168, 602
BseGI	GGATG	3 cut(s)	88, 205, 490
BseLI	CCNNNNNNNGG	2 cut(s)	61, 67
BseNI	ACTGG	2 cut(s)	55, 201
BseRI	GAGGAG	1 cut(s)	246
BseSI	GKGCMC	2 cut(s)	48, 226
BseXI	GCAGC	5 cut(s)	351, 434, 584, 602, 620
Bsh1236I	CGCG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	54, 827
BshNI	GGYRCC	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	758
BsiHKAI	GWGCWC	1 cut(s)	720
BsiHKCI	CYCGRG	1 cut(s)	821
BsiSI	CCGG	1 cut(s)	616
BsiWI	CGTACG	1 cut(s)	748
BslFI	GGGAC	3 cut(s)	99, 186, 680
BslI	CCNNNNNNNGG	2 cut(s)	61, 67
BsmFI	GGGAC	3 cut(s)	99, 186, 680
BsnI	GGCC	2 cut(s)	54, 827
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	3 cut(s)	48, 226, 720
Bsp143I	GATC	5 cut(s)	202, 598, 618, 687, 759
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	2 cut(s)	54, 827
BspDI	ATCGAT	1 cut(s)	758
BspFNI	CGCG	1 cut(s)	507
BspHI	TCATGA	2 cut(s)	205, 496
BspLI	GGNNCC	1 cut(s)	47
BspPI	GGATC	4 cut(s)	593, 626, 682, 754
BspT107I	GGYRCC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	55, 201
BssECI	CCNNGG	3 cut(s)	49, 168, 602
BssMI	GATC	5 cut(s)	202, 598, 618, 687, 759
BssT1I	CCWWGG	2 cut(s)	49, 168
Bst2UI	CCWGG	1 cut(s)	62
BstBAI	YACGTR	2 cut(s)	445, 752
BstC8I	GCNNGC	2 cut(s)	73, 222
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	88, 205, 490
BstFNI	CGCG	1 cut(s)	507
BstKTI	GATC	5 cut(s)	205, 601, 621, 690, 762
BstMBI	GATC	5 cut(s)	202, 598, 618, 687, 759
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 353, 419
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	2 cut(s)	48, 226
BstUI	CGCG	1 cut(s)	507
BstV1I	GCAGC	5 cut(s)	351, 434, 584, 602, 620
BstX2I	RGATCY	2 cut(s)	598, 687
BstYI	RGATCY	2 cut(s)	598, 687
Bsu15I	ATCGAT	1 cut(s)	758
BsuRI	GGCC	2 cut(s)	54, 827
BsuTUI	ATCGAT	1 cut(s)	758
BtgI	CCRYGG	1 cut(s)	168
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	3 cut(s)	88, 205, 490
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	73, 222
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	2 cut(s)	205, 496
ClaI	ATCGAT	1 cut(s)	758
CsiI	ACCWGGT	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	58, 749
CviAII	CATG	6 cut(s)	169, 206, 386, 497, 675, 692
CviQI	GTAC	2 cut(s)	58, 749
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	5 cut(s)	204, 600, 620, 689, 761
DpnII	GATC	5 cut(s)	202, 598, 618, 687, 759
EaeI	YGGCCR	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	49, 168
Eco147I	AGGCCT	1 cut(s)	827
Eco24I	GRGCYC	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	669
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	2 cut(s)	128, 312
Eco88I	CYCGRG	1 cut(s)	821
EcoICRI	GAGCTC	1 cut(s)	718
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	60
EcoRV	GATATC	1 cut(s)	669
EcoT14I	CCWWGG	2 cut(s)	49, 168
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	2 cut(s)	49, 168
FaeI	CATG	6 cut(s)	172, 209, 389, 500, 678, 695
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 305, 337
FaqI	GGGAC	3 cut(s)	99, 186, 680
FatI	CATG	6 cut(s)	168, 205, 385, 496, 674, 691
FauI	CCCGC	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	5 cut(s)	365, 423, 573, 591, 609
FokI	GGATG	3 cut(s)	75, 212, 477
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	5 cut(s)	365, 423, 573, 591, 609
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	5 cut(s)	365, 423, 573, 591, 609
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	54, 827
HapII	CCGG	1 cut(s)	616
Hin1II	CATG	6 cut(s)	172, 209, 389, 500, 678, 695
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	3 cut(s)	131, 174, 318
HpaII	CCGG	1 cut(s)	616
HphI	GGTGA	4 cut(s)	76, 203, 545, 728
Hpy166II	GTNNAC	3 cut(s)	194, 238, 632
Hpy188I	TCNGA	3 cut(s)	331, 338, 603
Hpy188III	TCNNGA	5 cut(s)	206, 266, 497, 622, 842
Hpy8I	GTNNAC	3 cut(s)	194, 238, 632
HpyAV	CCTTC	6 cut(s)	61, 182, 336, 390, 402, 773
HpyCH4IV	ACGT	4 cut(s)	444, 546, 747, 751
HpyCH4V	TGCA	3 cut(s)	151, 452, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 353, 419
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	4 cut(s)	444, 546, 747, 751
Hsp92II	CATG	6 cut(s)	172, 209, 389, 500, 678, 695
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	202, 598, 618, 687, 759
Lsp1109I	GCAGC	5 cut(s)	351, 434, 584, 602, 620
MabI	ACCWGGT	1 cut(s)	60
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	4 cut(s)	444, 546, 747, 751
MalI	GATC	5 cut(s)	204, 600, 620, 689, 761
MboI	GATC	5 cut(s)	202, 598, 618, 687, 759
MboII	GAAGA	3 cut(s)	126, 412, 575
MfeI	CAATTG	1 cut(s)	656
MflI	RGATCY	2 cut(s)	598, 687
MhlI	GDGCHC	3 cut(s)	48, 226, 720
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	9 cut(s)	30, 246, 279, 332, 429, 516, 656, 661, 708
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	116
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	551
MslI	CAYNNNNRTG	2 cut(s)	443, 495
Msp20I	TGGCCA	1 cut(s)	54
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	656
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	148, 353, 419
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	5 cut(s)	202, 598, 618, 687, 759
NlaIII	CATG	6 cut(s)	172, 209, 389, 500, 678, 695
NlaIV	GGNNCC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	389
OliI	CACNNNNGTG	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	821
PagI	TCATGA	2 cut(s)	205, 496
PceI	AGGCCT	1 cut(s)	827
PciI	ACATGT	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	131, 318
Pfl23II	CGTACG	1 cut(s)	748
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	366, 424, 574, 592, 610
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
Ppu21I	YACGTR	2 cut(s)	445, 752
PscI	ACATGT	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	849
Psp124BI	GAGCTC	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspLI	CGTACG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	47
PspXI	VCTCGAGB	1 cut(s)	821
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	598, 687
RsaI	GTAC	2 cut(s)	59, 750
RsaNI	GTAC	2 cut(s)	58, 749
RseI	CAYNNNNRTG	2 cut(s)	443, 495
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	5 cut(s)	365, 423, 573, 591, 609
Sau3AI	GATC	5 cut(s)	202, 598, 618, 687, 759
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	3 cut(s)	48, 226, 720
SexAI	ACCWGGT	1 cut(s)	60
Sfr274I	CTCGAG	1 cut(s)	821
SlaI	CTCGAG	1 cut(s)	821
SmiMI	CAYNNNNRTG	2 cut(s)	443, 495
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	9 cut(s)	30, 246, 279, 332, 429, 516, 656, 661, 708
SseBI	AGGCCT	1 cut(s)	827
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	827
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	2 cut(s)	49, 168
TaiI	ACGT	4 cut(s)	447, 549, 750, 754
TaqI	TCGA	3 cut(s)	375, 758, 822
TasI	AATT	9 cut(s)	30, 246, 279, 332, 429, 516, 656, 661, 708
TfiI	GAWTC	2 cut(s)	131, 318
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	5 cut(s)	364, 422, 572, 590, 608
TspDTI	ATGAA	4 cut(s)	222, 479, 766, 809
TspRI	CASTG	1 cut(s)	535
Van91I	CCANNNNNTGG	1 cut(s)	61
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	3 cut(s)	332, 429, 661
XceI	RCATGY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	821
XmiI	GTMKAC	1 cut(s)	631
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.