Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Reverse (-)

16942554 .. 16945040

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATGGCTTGTGAAAAGAGCAAGATACTCATAATCGGAGCCACAGGTTACCTTGGCAAATACATGTTGAAGGCAAGCGTCTCTTTGGGACATCCAACCTATGCCTACGTGAGACCAATCAAACCCAAAACCGATTCTTCCAAGCTTCTTCTGCACAAAGAATTTGAAGCCATGGGAGCCACCATCTTCCAAGGTGAACTGGATGATCATGAAAAGCTAGTCAAAGCAGTTGAGCAAGTTGACGTTGTAATATCCACGGTGGCTGTCCCTCAACATCTCGAACAGCTGAAACTAATCAAGGCCATGAAAGATGCTGGAAATATAAAGAGATTTATTCCGTCAGAATTTGGAAATGAAGTTGACAGAGTAAGTGGGCTGCCGCCTTTCGAGGCTTTACTTGATAACAAAAGGAAGATCAGAAGGGCGATCGAAGCAGCAGGAATTCCATATACTTATGTGTCTGCAAACTCATTTGGTGCATATTTTGTTGATTATTTGCTTCATCCTCGTGAAAAAACAAACCACCAAGTCACTGTTTATGGCACTGGTGAAGCCAAAGCCGTGTTGAACTATGAGGAAGATGTTGCTACCTACACAATAAAAGCAGCAACAGATCCAAGGGTTGCCAACCGTGTCATCGTTTACAGGCCACAAGGAAACATTGTGTCCCAGTTGGATTTGATTTCTTCTTGGGAGAAGAAGACAGGATGCACTCTTACAAGGAGCTATGTCCCAGAAGAAGAAATACTCAAGCTCTCTGAGACCCTCCCTTCCCCGGACAACATAGCGGTGTCAATTCTGCACAACATATTCATTAAAGGAGATCAAATGAGTTTTGAACTAACAGAAAATGACCTAGAGGCCTCCGAGTTATATCCTGATTACAAGTACACTTCCATTGATAGCTTCCTCGACATTTGCCTGGTGGATCCTCCCAAGCCAAAATTAGCAGCATTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

321

Amino Acids

35.77

Weight (kDa)

5.75

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	380, 788
AclWI	GGATC	3 cut(s)	608, 923, 936
AcsI	RAATTY	3 cut(s)	161, 344, 441
AfaI	GTAC	1 cut(s)	890
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	70, 167, 568, 839, 959
AjnI	CCWGG	1 cut(s)	921
AluBI	AGCT	6 cut(s)	145, 217, 286, 726, 754, 906
AluI	AGCT	6 cut(s)	145, 217, 286, 726, 754, 906
Alw26I	GTCTC	3 cut(s)	85, 106, 755
AlwI	GGATC	3 cut(s)	608, 923, 936
AoxI	GGCC	3 cut(s)	300, 647, 861
ApeKI	GCWGC	4 cut(s)	376, 434, 605, 950
ApoI	RAATTY	3 cut(s)	161, 344, 441
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	206, 560
BamHI	GGATCC	1 cut(s)	928
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	707
BbvI	GCAGC	3 cut(s)	363, 446, 617
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	923
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	3 cut(s)	85, 106, 755
BfaI	CTAG	2 cut(s)	218, 857
BisI	GCNGC	5 cut(s)	377, 380, 435, 606, 951
BlsI	GCNGC	5 cut(s)	378, 381, 436, 607, 952
Bme1390I	CCNGG	2 cut(s)	776, 923
BmiI	GGNNCC	3 cut(s)	40, 178, 930
BmrFI	CCNGG	2 cut(s)	776, 923
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	301, 698
BmuI	ACTGGG	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	776
BsaAI	YACGTR	1 cut(s)	109
BsaI	GGTCTC	2 cut(s)	106, 755
BsaJI	CCNNGG	6 cut(s)	52, 171, 190, 255, 617, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	3 cut(s)	204, 550, 670
BseBI	CCWGG	1 cut(s)	923
BseDI	CCNNGG	6 cut(s)	52, 171, 190, 255, 617, 774
BseGI	GGATG	4 cut(s)	91, 208, 502, 713
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	3 cut(s)	204, 550, 670
BseXI	GCAGC	3 cut(s)	363, 446, 617
BsgI	GTGCAG	2 cut(s)	137, 785
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	302, 649, 863
BsiEI	CGRYCG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	776
BslFI	GGGAC	4 cut(s)	102, 251, 652, 716
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	3 cut(s)	85, 106, 755
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	4 cut(s)	102, 251, 652, 716
BsnI	GGCC	3 cut(s)	302, 649, 863
Bso31I	GGTCTC	2 cut(s)	106, 755
Bsp143I	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	380, 788
BspANI	GGCC	3 cut(s)	302, 649, 863
BspCNI	CTCAG	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	40, 178, 930
BspPI	GGATC	3 cut(s)	608, 923, 936
BspTNI	GGTCTC	2 cut(s)	106, 755
BsrI	ACTGG	3 cut(s)	204, 550, 670
BssECI	CCNNGG	6 cut(s)	52, 171, 190, 255, 617, 774
BssMI	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	4 cut(s)	52, 171, 190, 617
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	3 cut(s)	259, 535, 632
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	759
BstDSI	CCRYGG	2 cut(s)	171, 255
BstEII	GGTNACC	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	91, 208, 502, 713
BstKTI	GATC	6 cut(s)	208, 417, 429, 616, 826, 931
BstMAI	GTCTC	3 cut(s)	85, 106, 755
BstMBI	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 176, 431
BstNI	CCWGG	1 cut(s)	923
BstNSI	RCATGY	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	774, 921
BstV1I	GCAGC	3 cut(s)	363, 446, 617
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	2 cut(s)	613, 928
BstYI	RGATCY	2 cut(s)	613, 928
BsuRI	GGCC	3 cut(s)	302, 649, 863
BtgI	CCRYGG	2 cut(s)	171, 255
BtsCI	GGATG	4 cut(s)	91, 208, 502, 713
BtsIMutI	CAGTG	2 cut(s)	531, 543
Cac8I	GCNNGC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	208
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	4 cut(s)	64, 172, 209, 304
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	1 cut(s)	759
DpnI	GATC	6 cut(s)	207, 416, 428, 615, 825, 930
DpnII	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
Eco130I	CCWWGG	4 cut(s)	52, 171, 190, 617
Eco147I	AGGCCT	1 cut(s)	863
Eco31I	GGTCTC	2 cut(s)	106, 755
Eco91I	GGTNACC	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	921
EcoT14I	CCWWGG	4 cut(s)	52, 171, 190, 617
ErhI	CCWWGG	4 cut(s)	52, 171, 190, 617
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	4 cut(s)	67, 175, 212, 307
FalI	AAGNNNNNCTT	2 cut(s)	67, 99
FaqI	GGGAC	4 cut(s)	102, 251, 652, 716
FatI	CATG	4 cut(s)	63, 171, 208, 303
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	377, 380, 435, 606, 951
FokI	GGATG	4 cut(s)	78, 215, 489, 720
Fsp4HI	GCNGC	5 cut(s)	377, 380, 435, 606, 951
FspBI	CTAG	2 cut(s)	218, 857
GluI	GCNGC	5 cut(s)	377, 380, 435, 606, 951
HaeIII	GGCC	3 cut(s)	302, 649, 863
HapII	CCGG	1 cut(s)	776
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	4 cut(s)	67, 175, 212, 307
HincII	GTYRAC	2 cut(s)	241, 361
HindII	GTYRAC	2 cut(s)	241, 361
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	776
HphI	GGTGA	2 cut(s)	206, 560
Hpy166II	GTNNAC	5 cut(s)	197, 241, 361, 643, 891
Hpy188I	TCNGA	5 cut(s)	38, 343, 419, 760, 868
Hpy188III	TCNNGA	4 cut(s)	209, 278, 509, 878
Hpy8I	GTNNAC	5 cut(s)	197, 241, 361, 643, 891
HpyAV	CCTTC	3 cut(s)	64, 414, 780
HpyCH4III	ACNGT	3 cut(s)	259, 535, 632
HpyCH4IV	ACGT	2 cut(s)	108, 243
HpyCH4V	TGCA	5 cut(s)	154, 464, 479, 711, 802
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 176, 431
HpyF3I	CTNAG	1 cut(s)	759
HpySE526I	ACGT	2 cut(s)	108, 243
Hsp92II	CATG	4 cut(s)	67, 175, 212, 307
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
LmnI	GCTCC	3 cut(s)	38, 176, 723
Lsp1109I	GCAGC	3 cut(s)	363, 446, 617
LweI	GCATC	2 cut(s)	301, 698
MaeI	CTAG	2 cut(s)	218, 857
MaeII	ACGT	2 cut(s)	108, 243
MaeIII	GTNAC	2 cut(s)	47, 529
MalI	GATC	6 cut(s)	207, 416, 428, 615, 825, 930
MboI	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
MflI	RGATCY	2 cut(s)	613, 928
MluCI	AATT	5 cut(s)	161, 344, 441, 795, 944
MmeI	TCCRAC	2 cut(s)	119, 654
MnlI	CCTC	9 cut(s)	279, 382, 516, 568, 776, 853, 874, 920, 942
MseI	TTAA	1 cut(s)	816
MslI	CAYNNNNRTG	3 cut(s)	507, 788, 958
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	1 cut(s)	776
MspR9I	CCNGG	2 cut(s)	776, 923
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	3 cut(s)	151, 176, 431
NciI	CCSGG	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
NlaIII	CATG	4 cut(s)	67, 175, 212, 307
NlaIV	GGNNCC	3 cut(s)	40, 178, 930
NmuCI	GTSAC	1 cut(s)	529
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	863
PciI	ACATGT	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	378, 381, 436, 607, 952
Ple19I	CGATCG	1 cut(s)	429
Ppu21I	YACGTR	1 cut(s)	109
PscI	ACATGT	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	921
PspEI	GGTNACC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	3 cut(s)	40, 178, 930
PsuI	RGATCY	2 cut(s)	613, 928
PvuI	CGATCG	1 cut(s)	429
PvuII	CAGCTG	1 cut(s)	286
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
RseI	CAYNNNNRTG	3 cut(s)	507, 788, 958
SaqAI	TTAA	1 cut(s)	816
SatI	GCNGC	5 cut(s)	377, 380, 435, 606, 951
Sau3AI	GATC	6 cut(s)	205, 414, 426, 613, 823, 928
ScrFI	CCNGG	2 cut(s)	776, 923
SfaNI	GCATC	2 cut(s)	301, 698
SmiMI	CAYNNNNRTG	3 cut(s)	507, 788, 958
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	5 cut(s)	161, 344, 441, 795, 944
SseBI	AGGCCT	1 cut(s)	863
SsiI	CCGC	2 cut(s)	380, 788
SspMI	CTAG	2 cut(s)	218, 857
StuI	AGGCCT	1 cut(s)	863
StyD4I	CCNGG	2 cut(s)	774, 921
StyI	CCWWGG	4 cut(s)	52, 171, 190, 617
TaaI	ACNGT	3 cut(s)	259, 535, 632
TaiI	ACGT	2 cut(s)	111, 246
TaqI	TCGA	4 cut(s)	279, 387, 429, 912
TasI	AATT	5 cut(s)	161, 344, 441, 795, 944
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	816
Tru9I	TTAA	1 cut(s)	816
TscAI	CASTG	2 cut(s)	538, 550
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	4 cut(s)	376, 434, 605, 950
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	5 cut(s)	225, 320, 369, 491, 802
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	538, 550
XapI	RAATTY	3 cut(s)	161, 344, 441
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	2 cut(s)	218, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.