Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005909

Physical Location & Seq

Genomic Coordinates Forward (+)

55173387 .. 55185215

Gene Structure 11829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCTGAAGAAAAGAGCAAGATACTGATAATTGGAAGCACAGGCCATCTAGGCCGGTACATGGTGAAGGCAAGCGTTTCTTTGGGACATCCAACCTATGCTTATGTGCGACCAATCAAACCCACCACCGATTCTTCAAAGCTTCAGTTGCTCAAGGAATTTGAAGCCATGGGGCTCACTCTTCTTCAAGGTGAACTGGATGATCATGAAAATCTAGTGGGGACACTTAAACTAGTTGACATTGTCATTTCTACTTTGGCTGTTCCTCAACATCTTGAACAGCTCAAAATAATCAAGGCTATCAAAGAAGCTGGGAATATAAAGAGATTCTTTCCGTCAGAATTCGGAAACGAAGAAGATAGAGTAAGTGGGCTGCCACCTTTCGAGGCTATACATGTGAATAGAAGGAAGATTAGAAGGGCTACAGAAGCAGCAGGAATTTCATACACTTATGTGTCTGCAAACACTATTGCTTCTTACTTTGTTGACTATTTACTTCATCCTCATGAGAAACGCGAGGAAGTAATCGTGTATGGCAGTGGTGAAGCCAAGGCCGTGTTAAACTACGAGGAAGATGTAGCCGCTTACACCATAAGAGCAGCAACAGATCCAAGAGCAGCGAACCGGATCGTGATTTGCAGACCGCAAGGAAACATTGTATCTCAATTGGAGTTGATATCAGCATGGGAGAAAAAGACAGGACGCACTCTTAAAAGGATCCATGTCCCAGAACAAGAAATTATAGAGAGCTCTAAGACCCTCCCTCACCCAGACAACGTACGTGCATCGATCCTTCACAGCATATTCATCAAAGGGGAACAGATGAACTTCGAACTCACAGACAATGACCTCGAGGCCTCCAAATTATATCCCGATTACAAGTACACTTCCATTGATAGCTACCTTGACATTTGCTTGGTTGATCCTCCCAGGATCAAATTAGCAGCGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NmrA

Protein Analysis

317

Amino Acids

35.57

Weight (kDa)

6.38

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 302	1.6e-58	NmrA-like family
NAD_binding_10	PF13460	12 - 157	3.4e-09	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005909)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28640 FvH4_3g28660
malus_domestica	MD03G1173300.v1.1 MD11G1191100.v1.1
prunus_persica	Prupe.4G251700_v2.0.a1 Prupe.4G251900_v2.0.a1 Prupe.4G252000_v2.0.a1 Prupe.4G252300_v2.0.a1
pyrus_communis	pycom03g13040 pycom03g13060 pycom11g17360
rosa_chinensis	RchiOBHm_Chr5g0052411 RchiOBHm_Chr5g0052441
rosa_laevigata	RLG00000034818
rosa_multiflora	Rmu_co8443917.1_g000001 Rmu_sc0006803.1_g000047 Rmu_sc0011203.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028310 Rroxscaffold_1G00028340
rosa_rugosa	Rorug05G0271900 Rorug05G0272000 Rorug05G0272100
rosa_samantha	Rh5AG344700 Rh5AG344800 Rh5BG355600 Rh5CG381300
rosa_wichuraiana	Rw5G032530 Rw5G032540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	851
AccII	CGCG	1 cut(s)	516
AciI	CCGC	2 cut(s)	582, 644
AclWI	GGATC	7 cut(s)	602, 635, 712, 725, 784, 917, 941
AcsI	RAATTY	3 cut(s)	158, 341, 438
AcuI	CTGAAG	2 cut(s)	27, 128
AfaI	GTAC	3 cut(s)	59, 780, 884
AfiI	CCNNNNNNNGG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	138, 164, 188, 278
AhlI	ACTAGT	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	929
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	5 cut(s)	142, 283, 311, 750, 900
AluI	AGCT	5 cut(s)	142, 283, 311, 750, 900
Alw21I	GWGCWC	1 cut(s)	752
AlwI	GGATC	7 cut(s)	602, 635, 712, 725, 784, 917, 941
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	4 cut(s)	43, 52, 552, 855
ApeKI	GCWGC	5 cut(s)	373, 431, 599, 617, 944
ApoI	RAATTY	3 cut(s)	158, 341, 438
AsuHPI	GGTGA	4 cut(s)	76, 203, 554, 758
AsuII	TTCGAA	1 cut(s)	831
AvaI	CYCGRG	1 cut(s)	851
BamHI	GGATCC	1 cut(s)	717
BanII	GRGCYC	2 cut(s)	177, 752
Bbv12I	GWGCWC	1 cut(s)	752
BbvI	GCAGC	4 cut(s)	360, 443, 611, 629
BccI	CCATC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	539
BciT130I	CCWGG	1 cut(s)	931
BclI	TGATCA	1 cut(s)	202
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	3 cut(s)	50, 215, 233
BfmI	CTRYAG	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	6 cut(s)	374, 432, 582, 600, 618, 945
BlsI	GCNGC	6 cut(s)	375, 433, 583, 601, 619, 946
Bme1390I	CCNGG	1 cut(s)	931
BmeT110I	CYCGRG	1 cut(s)	851
BmiI	GGNNCC	1 cut(s)	719
BmrFI	CCNGG	1 cut(s)	931
BmsI	GCATC	1 cut(s)	794
Bpu14I	TTCGAA	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	788
BsaAI	YACGTR	1 cut(s)	782
BsaJI	CCNNGG	3 cut(s)	168, 549, 929
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	931
BseCI	ATCGAT	1 cut(s)	788
BseDI	CCNNGG	3 cut(s)	168, 549, 929
BseGI	GGATG	3 cut(s)	88, 205, 499
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	4 cut(s)	360, 443, 611, 629
BseYI	CCCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	4 cut(s)	45, 54, 554, 857
BshVI	ATCGAT	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	752
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	55, 625
BsiWI	CGTACG	1 cut(s)	778
BslFI	GGGAC	3 cut(s)	99, 235, 710
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	3 cut(s)	99, 235, 710
BsnI	GGCC	4 cut(s)	45, 54, 554, 857
BsoBI	CYCGRG	1 cut(s)	851
Bsp119I	TTCGAA	1 cut(s)	831
Bsp1286I	GDGCHC	2 cut(s)	177, 752
Bsp143I	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	2 cut(s)	582, 644
BspANI	GGCC	4 cut(s)	45, 54, 554, 857
BspDI	ATCGAT	1 cut(s)	788
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	2 cut(s)	205, 505
BspLI	GGNNCC	1 cut(s)	719
BspPI	GGATC	7 cut(s)	602, 635, 712, 725, 784, 917, 941
BspT104I	TTCGAA	1 cut(s)	831
BsrFI	RCCGGY	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	3 cut(s)	168, 549, 929
BssMI	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
BssT1I	CCWWGG	2 cut(s)	168, 549
Bst2UI	CCWGG	1 cut(s)	931
Bst6I	CTCTTC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	782
BstBI	TTCGAA	1 cut(s)	831
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	753
BstDSI	CCRYGG	1 cut(s)	168
BstF5I	GGATG	3 cut(s)	88, 205, 499
BstFNI	CGCG	1 cut(s)	516
BstKTI	GATC	7 cut(s)	205, 610, 630, 720, 792, 925, 936
BstMBI	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 148, 428
BstNI	CCWGG	1 cut(s)	931
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	929
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	360, 443, 611, 629
BstX2I	RGATCY	2 cut(s)	607, 717
BstYI	RGATCY	2 cut(s)	607, 717
Bsu15I	ATCGAT	1 cut(s)	788
BsuRI	GGCC	4 cut(s)	45, 54, 554, 857
BsuTUI	ATCGAT	1 cut(s)	788
BtgI	CCRYGG	1 cut(s)	168
BtsCI	GGATG	3 cut(s)	88, 205, 499
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	73
CciI	TCATGA	2 cut(s)	205, 505
Cfr10I	RCCGGY	1 cut(s)	54
ClaI	ATCGAT	1 cut(s)	788
CseI	GACGC	1 cut(s)	711
Csp6I	GTAC	3 cut(s)	58, 779, 883
CviAII	CATG	7 cut(s)	61, 169, 206, 395, 506, 684, 722
CviQI	GTAC	3 cut(s)	58, 779, 883
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	7 cut(s)	204, 609, 629, 719, 791, 924, 935
DpnII	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	750
Eco130I	CCWWGG	2 cut(s)	168, 549
Eco147I	AGGCCT	1 cut(s)	857
Eco24I	GRGCYC	2 cut(s)	177, 752
Eco32I	GATATC	1 cut(s)	678
Eco53kI	GAGCTC	1 cut(s)	750
Eco57I	CTGAAG	2 cut(s)	27, 128
Eco88I	CYCGRG	1 cut(s)	851
EcoICRI	GAGCTC	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	929
EcoRV	GATATC	1 cut(s)	678
EcoT14I	CCWWGG	2 cut(s)	168, 549
EcoT38I	GRGCYC	2 cut(s)	177, 752
ErhI	CCWWGG	2 cut(s)	168, 549
FaeI	CATG	7 cut(s)	64, 172, 209, 398, 509, 687, 725
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 314, 346
FaqI	GGGAC	3 cut(s)	99, 235, 710
FatI	CATG	7 cut(s)	60, 168, 205, 394, 505, 683, 721
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	6 cut(s)	374, 432, 582, 600, 618, 945
FokI	GGATG	3 cut(s)	75, 212, 486
FriOI	GRGCYC	2 cut(s)	177, 752
Fsp4HI	GCNGC	6 cut(s)	374, 432, 582, 600, 618, 945
FspBI	CTAG	3 cut(s)	50, 215, 233
GluI	GCNGC	6 cut(s)	374, 432, 582, 600, 618, 945
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	4 cut(s)	45, 54, 554, 857
HapII	CCGG	2 cut(s)	55, 625
HgaI	GACGC	1 cut(s)	711
Hin1II	CATG	7 cut(s)	64, 172, 209, 398, 509, 687, 725
HincII	GTYRAC	2 cut(s)	238, 487
HindII	GTYRAC	2 cut(s)	238, 487
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	131, 327
HpaII	CCGG	2 cut(s)	55, 625
HphI	GGTGA	4 cut(s)	76, 203, 554, 758
Hpy166II	GTNNAC	4 cut(s)	194, 238, 487, 885
Hpy188I	TCNGA	2 cut(s)	340, 347
Hpy188III	TCNNGA	5 cut(s)	206, 275, 506, 631, 872
Hpy8I	GTNNAC	4 cut(s)	194, 238, 487, 885
HpyAV	CCTTC	4 cut(s)	61, 399, 411, 803
HpyCH4IV	ACGT	2 cut(s)	777, 781
HpyCH4V	TGCA	3 cut(s)	461, 639, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 148, 428
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	2 cut(s)	777, 781
Hsp92II	CATG	7 cut(s)	64, 172, 209, 398, 509, 687, 725
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
Lsp1109I	GCAGC	4 cut(s)	360, 443, 611, 629
LweI	GCATC	1 cut(s)	794
MaeI	CTAG	3 cut(s)	50, 215, 233
MaeII	ACGT	2 cut(s)	777, 781
MalI	GATC	7 cut(s)	204, 609, 629, 719, 791, 924, 935
MboI	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
MboII	GAAGA	8 cut(s)	20, 126, 173, 176, 365, 368, 421, 584
MfeI	CAATTG	1 cut(s)	665
MflI	RGATCY	2 cut(s)	607, 717
MhlI	GDGCHC	2 cut(s)	177, 752
MluCI	AATT	8 cut(s)	30, 158, 341, 438, 665, 738, 863, 938
MmeI	TCCRAC	1 cut(s)	116
MseI	TTAA	3 cut(s)	228, 560, 711
MslI	CAYNNNNRTG	2 cut(s)	452, 504
MspI	CCGG	2 cut(s)	55, 625
MspR9I	CCNGG	1 cut(s)	931
MunI	CAATTG	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	931
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	3 cut(s)	51, 148, 428
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
NlaIII	CATG	7 cut(s)	64, 172, 209, 398, 509, 687, 725
NlaIV	GGNNCC	1 cut(s)	719
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	831
OliI	CACNNNNGTG	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	851
PagI	TCATGA	2 cut(s)	205, 505
PceI	AGGCCT	1 cut(s)	857
PciI	ACATGT	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	131, 327
Pfl23II	CGTACG	1 cut(s)	778
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	6 cut(s)	375, 433, 583, 601, 619, 946
Ppu21I	YACGTR	1 cut(s)	782
PscI	ACATGT	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	929
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	929
PspLI	CGTACG	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	719
PspXI	VCTCGAGB	1 cut(s)	851
PsuI	RGATCY	2 cut(s)	607, 717
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	3 cut(s)	59, 780, 884
RsaNI	GTAC	3 cut(s)	58, 779, 883
RseI	CAYNNNNRTG	2 cut(s)	452, 504
SacI	GAGCTC	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	228, 560, 711
SatI	GCNGC	6 cut(s)	374, 432, 582, 600, 618, 945
Sau3AI	GATC	7 cut(s)	202, 607, 627, 717, 789, 922, 933
ScrFI	CCNGG	1 cut(s)	931
SduI	GDGCHC	2 cut(s)	177, 752
SfaNI	GCATC	1 cut(s)	794
SfcI	CTRYAG	1 cut(s)	423
SfiI	GGCCNNNNNGGCC	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	851
SfuI	TTCGAA	1 cut(s)	831
SlaI	CTCGAG	1 cut(s)	851
SmiMI	CAYNNNNRTG	2 cut(s)	452, 504
SmlI	CTYRAG	2 cut(s)	152, 851
SmoI	CTYRAG	2 cut(s)	152, 851
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	8 cut(s)	30, 158, 341, 438, 665, 738, 863, 938
SseBI	AGGCCT	1 cut(s)	857
SsiI	CCGC	2 cut(s)	582, 644
SspMI	CTAG	3 cut(s)	50, 215, 233
SstI	GAGCTC	1 cut(s)	752
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	1 cut(s)	929
StyI	CCWWGG	2 cut(s)	168, 549
TaiI	ACGT	2 cut(s)	780, 784
TaqI	TCGA	4 cut(s)	384, 788, 831, 852
TasI	AATT	8 cut(s)	30, 158, 341, 438, 665, 738, 863, 938
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	131, 327
Tru1I	TTAA	3 cut(s)	228, 560, 711
Tru9I	TTAA	3 cut(s)	228, 560, 711
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	5 cut(s)	373, 431, 599, 617, 944
TspDTI	ATGAA	5 cut(s)	222, 432, 488, 796, 839
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	544
Tth111I	GACNNNGTC	1 cut(s)	242
XapI	RAATTY	3 cut(s)	158, 341, 438
XceI	RCATGY	1 cut(s)	398
XhoI	CTCGAG	1 cut(s)	851
XspI	CTAG	3 cut(s)	50, 215, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.