pycom03g13040

synthase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0005909
Physical Location & Seq
Forward (+)
13934078 .. 13935342
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g13040.2

Sequence Viewer

Length: 426 bp
ATGAGCACGAAAACTAGTCGCAGTAGTTTGGAGATCGATCCAAAAAGAGTAAGCGTGCTGCCGCCTTTTGAGGTTATACATGGGAATAGAAGGGTGATTATAAGGGCGACTGAAGCAGCAGCAATTCCGTACACTTATGTGTGTGGAAACACATTTGCTGCATATTTTGTTGATTATTTGCTTCATCCTCGGGAAGAACGTGAGGAAGTCTTTGTTTATGGCACTGGTGAAGTCAAGGTTGACAAACCAATATGCAATACAATAATTTTGTTGTTCTTTGTGTTCCTTATTCTCTTGTTTTGGATGTATATATCTGTGTTGAATTACGAGGAAGATATAGCCACCTACACAATAAAAGCAGCAACAGATCCAAGGGCAGCCAATCATGTCCTCACTTGTAAACCGCAACAAAACATTATATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

142

Amino Acids

16.12

Weight (kDa)

6.28

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
AciI CCGC 2 cut(s) 62, 404
AclWI GGATC 2 cut(s) 32, 362
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 131
AgsI TTSAA 1 cut(s) 322
AhlI ACTAGT 1 cut(s) 14
AleI CACNNNNGTG 1 cut(s) 137
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 2 cut(s) 32, 362
Ama87I CYCGRG 1 cut(s) 189
ApeKI GCWGC 6 cut(s) 58, 116, 119, 158, 359, 377
AsuHPI GGTGA 2 cut(s) 106, 239
AvaI CYCGRG 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 6 cut(s) 45, 128, 131, 145, 371, 389
BcuI ACTAGT 1 cut(s) 14
BfaI CTAG 1 cut(s) 15
BisI GCNGC 7 cut(s) 59, 62, 117, 120, 159, 360, 378
BlsI GCNGC 7 cut(s) 60, 63, 118, 121, 160, 361, 379
BmeT110I CYCGRG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 188, 371
Bse1I ACTGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 188, 371
BseGI GGATG 2 cut(s) 184, 309
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 6 cut(s) 45, 128, 131, 145, 371, 389
BshVI ATCGAT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 33, 37, 367
BspACI CCGC 2 cut(s) 62, 404
BspDI ATCGAT 1 cut(s) 36
BspPI GGATC 2 cut(s) 32, 362
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 188, 371
BssMI GATC 3 cut(s) 33, 37, 367
BssT1I CCWWGG 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 184, 309
BstKTI GATC 3 cut(s) 36, 40, 370
BstMBI GATC 3 cut(s) 33, 37, 367
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV1I GCAGC 6 cut(s) 45, 128, 131, 145, 371, 389
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
Bsu15I ATCGAT 1 cut(s) 36
BsuTUI ATCGAT 1 cut(s) 36
BtsCI GGATG 2 cut(s) 184, 309
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 36
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 80, 386
CviJI RGCY 2 cut(s) 341, 380
CviKI_1 RGCY 2 cut(s) 341, 380
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 423
DpnI GATC 3 cut(s) 35, 39, 369
DpnII GATC 3 cut(s) 33, 37, 367
Eco130I CCWWGG 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 2 cut(s) 83, 389
FatI CATG 2 cut(s) 79, 385
Fnu4HI GCNGC 7 cut(s) 59, 62, 117, 120, 159, 360, 378
FokI GGATG 2 cut(s) 171, 316
Fsp4HI GCNGC 7 cut(s) 59, 62, 117, 120, 159, 360, 378
FspBI CTAG 1 cut(s) 15
GluI GCNGC 7 cut(s) 59, 62, 117, 120, 159, 360, 378
Hin1II CATG 2 cut(s) 83, 389
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HphI GGTGA 2 cut(s) 106, 239
Hpy166II GTNNAC 3 cut(s) 132, 241, 401
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 3 cut(s) 132, 241, 401
HpyAV CCTTC 1 cut(s) 84
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 161, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 83, 389
Kzo9I GATC 3 cut(s) 33, 37, 367
LpnPI CCDG 1 cut(s) 210
Lsp1109I GCAGC 6 cut(s) 45, 128, 131, 145, 371, 389
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 199
MalI GATC 3 cut(s) 35, 39, 369
MboI GATC 3 cut(s) 33, 37, 367
MboII GAAGA 2 cut(s) 206, 344
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 3 cut(s) 123, 264, 322
MnlI CCTC 5 cut(s) 64, 196, 198, 322, 401
MslI CAYNNNNRTG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 3 cut(s) 33, 37, 367
NlaIII CATG 2 cut(s) 83, 389
OliI CACNNNNGTG 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PkrI GCNGC 7 cut(s) 60, 63, 118, 121, 160, 361, 379
PsiI TTATAA 1 cut(s) 101
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 137
SatI GCNGC 7 cut(s) 59, 62, 117, 120, 159, 360, 378
Sau3AI GATC 3 cut(s) 33, 37, 367
SduI GDGCHC 1 cut(s) 8
SetI ASST 4 cut(s) 75, 202, 240, 347
SmiMI CAYNNNNRTG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 14
Sse9I AATT 3 cut(s) 123, 264, 322
SsiI CCGC 2 cut(s) 62, 404
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 371
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 36
TasI AATT 3 cut(s) 123, 264, 322
TauI GCSGC 1 cut(s) 64
TscAI CASTG 1 cut(s) 229
TseI GCWGC 6 cut(s) 58, 116, 119, 158, 359, 377
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 229
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.