FvH4_3g34990

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
30207444 .. 30208625
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g34990.t1

Sequence Viewer

Length: 1182 bp
ATGGCTGTGAAAGCCAAAGTCGATGGTTTGGTCAATGTTAGCCAAGCTCGTGGTCGGAGCTTCAGACGTGGTGAAACATTAAGTGCCCCTGTGGCAGGCGCATCCGGCAGTCATCTATATTACGCAGCTGTGAAGATTGGAGGGTTCAAGGTCAACCTGGCCTTGGACACCGCTACGAGCGCAACCTGGGTTCAATCTGCCGGATGCATCTACTGTTTCAACGTCTCTGTGCCTAATTTCAAGTCTAGTAGCTTCATTCCGATGGCTGCAGATCACCCCATCTGCACTGCCTCAGCCGGCCTCACTCCACATCCTGCCAACAATGCCTGCTCCTACCGGTTTATGAACTCGGAGGGGATCTACGGCTTCGACACTTTCACTTTCTTCACCACCTCTGATCGGAAGCAGCGACACGTATCAGTCCCAGGTCTGGCGTTTGGGGTTGGTGTCATCAACAACTGGATCGACATTTTCTATTATGATCAGAGTGGTGGTGGCAATCCAATTGGAGGGTTTCTTGGATTGGGAAGGGATCAGCCCTCAAGTATCCTAAACCAGCTCTCGGTCCGAAAATTCTCATACTGCCTCCCTAAACGATTCGGAGACAAGGCTTTGTTCTATATTGGAGATAGTATCAATGCAAATTACACCGGCCCGTATGTGCAAACCACGCCCATCTTGGGGTCAAACCAAAACTTTTACTACCTGAAGCTGGAGGCCATCAGCATCAACGGCACCGCTCTGCCGATTGCGCAAGAAGTGCTCTCCCGCAACGGACAAGGCATCATAATCGACTGCGGATCTCCGTACTCTTCATTCGTCGATGAAGCATACGACATGATGCACCAAGCTGTGAAGGACTACTTCAAGCAGATTGCTGGCGAGCTGCCTTTGGCGAGAACAAGGTCAGGGTACAACCTTTGCTATGATCTGAAGAGGCACAAGTTTCTGGGAGGAGGAAGGTTTTCAATGGAGTTTCAGTTTCTTGGAGGAGCGACCCTCCACCTAGATGAATCCACCACTTTCCAGGAGTTCCCGGACCTGAACGAAGTCTGTTTCATGATGATCCGAGTCCAAGACCTCGGCGTGCCTAATATTCTAGGAGCGTTTCAGCAGCTGAACAAGCGCTTCGTCTTTGATGTGGCTTCCTCTATGCTGTCCTTTTCGCCTGATAGCTGTTAA

Protein Analysis

394

Amino Acids

43.01

Weight (kDa)

8.01

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 40 - 209 2.4e-16 Xylanase inhibitor N-terminal
TAXi_C PF14541 234 - 389 3.9e-21 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 753
AccB1I GGYRCC 1 cut(s) 734
AccBSI CCGCTC 1 cut(s) 740
AciI CCGC 4 cut(s) 171, 738, 769, 798
AclWI GGATC 5 cut(s) 365, 470, 540, 808, 1060
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 3 cut(s) 46, 728, 953
AfaI GTAC 2 cut(s) 809, 914
AfeI AGCGCT 1 cut(s) 1127
AfiI CCNNNNNNNGG 9 cut(s) 95, 163, 399, 430, 509, 562, 680, 681, 712
AflIII ACRYGT 1 cut(s) 412
AgeI ACCGGT 1 cut(s) 336
AgsI TTSAA 6 cut(s) 148, 194, 220, 241, 868, 969
AjiI CACGTC 1 cut(s) 68
AjnI CCWGG 4 cut(s) 156, 185, 424, 1026
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 2 cut(s) 229, 597
AlwI GGATC 5 cut(s) 365, 470, 540, 808, 1060
AlwNI CAGNNNCTG 1 cut(s) 1117
Aor51HI AGCGCT 1 cut(s) 1127
AoxI GGCC 4 cut(s) 159, 298, 652, 717
ApeKI GCWGC 5 cut(s) 125, 266, 406, 886, 1114
ApoI RAATTY 1 cut(s) 572
AsiGI ACCGGT 1 cut(s) 336
Asp700I GAANNNNTTC 1 cut(s) 964
AspLEI GCGC 4 cut(s) 101, 182, 754, 1128
AspS9I GGNCC 3 cut(s) 565, 653, 1039
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 3 cut(s) 83, 266, 379
AvaII GGWCC 2 cut(s) 565, 1039
BaeGI GKGCMC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 734
BauI CACGAG 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 765
BbvCI CCTCAGC 1 cut(s) 292
BbvI GCAGC 5 cut(s) 137, 253, 418, 873, 1126
BccI CCATC 5 cut(s) 17, 256, 287, 683, 728
BceAI ACGGC 2 cut(s) 379, 748
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BciT130I CCWGG 4 cut(s) 158, 187, 426, 1028
BciVI GTATCC 1 cut(s) 557
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 1037
BcoDI GTCTC 2 cut(s) 229, 597
BfaI CTAG 3 cut(s) 246, 1007, 1100
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 1129
BfuI GTATCC 1 cut(s) 557
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 5 cut(s) 126, 267, 407, 887, 1115
BlsI GCNGC 5 cut(s) 127, 268, 408, 888, 1116
Bme1390I CCNGG 5 cut(s) 158, 187, 426, 1028, 1037
Bme18I GGWCC 2 cut(s) 565, 1039
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 3 cut(s) 565, 653, 1039
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 5 cut(s) 158, 187, 426, 1028, 1037
BmsI GCATC 6 cut(s) 110, 194, 216, 735, 792, 831
BplI GAGNNNNNCTC 2 cut(s) 984, 1016
BpmI CTGGAG 1 cut(s) 734
Bpu10I CCTNAGC 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 526
BpuMI CCSGG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 162, 186, 424, 1081
BsaWI WCCGGW 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 965, 995
Bsc4I CCNNNNNNNGG 9 cut(s) 95, 163, 399, 430, 509, 562, 680, 681, 712
Bse118I RCCGGY 3 cut(s) 296, 336, 650
Bse1I ACTGG 1 cut(s) 464
BseBI CCWGG 4 cut(s) 158, 187, 426, 1028
BseDI CCNNGG 4 cut(s) 162, 186, 424, 1081
BseGI GGATG 3 cut(s) 101, 209, 310
BseLI CCNNNNNNNGG 9 cut(s) 95, 163, 399, 430, 509, 562, 680, 681, 712
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 464
BseRI GAGGAG 2 cut(s) 969, 1005
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 5 cut(s) 137, 253, 418, 873, 1126
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 4 cut(s) 161, 300, 654, 719
BshNI GGYRCC 1 cut(s) 734
BshTI ACCGGT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 6 cut(s) 105, 201, 297, 337, 651, 1037
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 9 cut(s) 95, 163, 399, 430, 509, 562, 680, 681, 712
BsmAI GTCTC 2 cut(s) 229, 597
BsmBI CGTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 4 cut(s) 161, 300, 654, 719
Bsp1286I GDGCHC 2 cut(s) 88, 765
Bsp143I GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
BspACI CCGC 4 cut(s) 171, 738, 769, 798
BspANI GGCC 4 cut(s) 161, 300, 654, 719
BspCNI CTCAG 1 cut(s) 305
BspHI TCATGA 1 cut(s) 1059
BspLI GGNNCC 1 cut(s) 736
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 5 cut(s) 365, 470, 540, 808, 1060
BspT107I GGYRCC 1 cut(s) 734
BsrBI CCGCTC 1 cut(s) 740
BsrFI RCCGGY 3 cut(s) 296, 336, 650
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 3 cut(s) 296, 336, 650
BssECI CCNNGG 4 cut(s) 162, 186, 424, 1081
BssMI GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
BssSI CACGAG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 4 cut(s) 158, 187, 426, 1028
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 2 cut(s) 817, 929
BstAPI GCANNNNNTGC 1 cut(s) 760
BstBAI YACGTR 1 cut(s) 415
BstC8I GCNNGC 6 cut(s) 97, 298, 328, 880, 884, 1088
BstDEI CTNAG 1 cut(s) 292
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 101, 209, 310
BstH2I RGCGCY 1 cut(s) 1129
BstHHI GCGC 4 cut(s) 101, 182, 754, 1128
BstKTI GATC 9 cut(s) 274, 360, 400, 465, 484, 535, 803, 931, 1068
BstMAI GTCTC 2 cut(s) 229, 597
BstMBI GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
BstNI CCWGG 4 cut(s) 158, 187, 426, 1028
BstSCI CCNGG 5 cut(s) 156, 185, 424, 1026, 1035
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 5 cut(s) 137, 253, 418, 873, 1126
BstX2I RGATCY 2 cut(s) 357, 800
BstXI CCANNNNNNTGG 1 cut(s) 50
BstYI RGATCY 2 cut(s) 357, 800
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 4 cut(s) 161, 300, 654, 719
BtrI CACGTC 1 cut(s) 68
BtsCI GGATG 3 cut(s) 101, 209, 310
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 6 cut(s) 97, 298, 328, 880, 884, 1088
CaiI CAGNNNCTG 1 cut(s) 1117
CciI TCATGA 1 cut(s) 1059
CfoI GCGC 4 cut(s) 101, 182, 754, 1128
Cfr10I RCCGGY 3 cut(s) 296, 336, 650
Cfr13I GGNCC 3 cut(s) 565, 653, 1039
CpoI CGGWCCG 1 cut(s) 565
Csp6I GTAC 2 cut(s) 808, 913
CspAI ACCGGT 1 cut(s) 336
CspI CGGWCCG 1 cut(s) 565
CviAII CATG 2 cut(s) 838, 1060
CviQI GTAC 2 cut(s) 808, 913
DdeI CTNAG 1 cut(s) 292
DpnI GATC 9 cut(s) 273, 359, 399, 464, 483, 534, 802, 930, 1067
DpnII GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
Eam1104I CTCTTC 2 cut(s) 817, 929
EarI CTCTTC 2 cut(s) 817, 929
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 565, 1039
Eco47III AGCGCT 1 cut(s) 1127
Eco57I CTGAAG 3 cut(s) 46, 728, 953
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRII CCWGG 4 cut(s) 156, 185, 424, 1026
EcoT14I CCWWGG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 2 cut(s) 841, 1063
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 837, 1059
FauI CCCGC 1 cut(s) 776
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 5 cut(s) 126, 267, 407, 887, 1115
FokI GGATG 3 cut(s) 88, 216, 297
Fsp4HI GCNGC 5 cut(s) 126, 267, 407, 887, 1115
FspBI CTAG 3 cut(s) 246, 1007, 1100
FspI TGCGCA 1 cut(s) 753
GlaI GCGC 4 cut(s) 100, 181, 753, 1127
GluI GCNGC 5 cut(s) 126, 267, 407, 887, 1115
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 1129
HaeIII GGCC 4 cut(s) 161, 300, 654, 719
HapII CCGG 6 cut(s) 105, 201, 297, 337, 651, 1037
HhaI GCGC 4 cut(s) 101, 182, 754, 1128
Hin1II CATG 2 cut(s) 841, 1063
Hin6I GCGC 4 cut(s) 99, 180, 752, 1126
HinP1I GCGC 4 cut(s) 99, 180, 752, 1126
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 597, 1013, 1071
HpaII CCGG 6 cut(s) 105, 201, 297, 337, 651, 1037
HphI GGTGA 3 cut(s) 83, 266, 379
Hpy166II GTNNAC 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 1060
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 3 cut(s) 522, 850, 954
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 3 cut(s) 67, 222, 414
HpyCH4V TGCA 6 cut(s) 207, 269, 285, 641, 664, 844
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 3 cut(s) 67, 222, 414
Hsp92II CATG 2 cut(s) 841, 1063
HspAI GCGC 4 cut(s) 99, 180, 752, 1126
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
LmnI GCTCC 4 cut(s) 57, 335, 992, 1103
Lsp1109I GCAGC 5 cut(s) 137, 253, 418, 873, 1126
LweI GCATC 6 cut(s) 110, 194, 216, 735, 792, 831
MaeI CTAG 3 cut(s) 246, 1007, 1100
MaeII ACGT 3 cut(s) 67, 222, 414
MalI GATC 9 cut(s) 273, 359, 399, 464, 483, 534, 802, 930, 1067
MbiI CCGCTC 1 cut(s) 740
MboI GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
MboII GAAGA 4 cut(s) 145, 376, 804, 946
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 2 cut(s) 357, 800
MhlI GDGCHC 2 cut(s) 88, 765
MluCI AATT 4 cut(s) 235, 504, 572, 643
MlyI GAGTC 1 cut(s) 1080
MmeI TCCRAC 1 cut(s) 35
Mph1103I ATGCAT 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 964
MseI TTAA 2 cut(s) 80, 1180
MslI CAYNNNNRTG 2 cut(s) 260, 1008
MspA1I CMGCKG 2 cut(s) 128, 1117
MspI CCGG 6 cut(s) 105, 201, 297, 337, 651, 1037
MspR9I CCNGG 5 cut(s) 158, 187, 426, 1028, 1037
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 4 cut(s) 158, 187, 426, 1028
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 1 cut(s) 1037
NdeII GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 2 cut(s) 841, 1063
NlaIV GGNNCC 1 cut(s) 736
NmeAIII GCCGAG 1 cut(s) 1062
NsbI TGCGCA 1 cut(s) 753
NsiI ATGCAT 1 cut(s) 209
PagI TCATGA 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 2 cut(s) 597, 1013
PfoI TCCNGGA 2 cut(s) 1026, 1035
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 5 cut(s) 127, 268, 408, 888, 1116
PleI GAGTC 1 cut(s) 1079
PpsI GAGTC 1 cut(s) 1079
Ppu21I YACGTR 1 cut(s) 415
Psp6I CCWGG 4 cut(s) 156, 185, 424, 1026
PspGI CCWGG 4 cut(s) 156, 185, 424, 1026
PspN4I GGNNCC 1 cut(s) 736
PspPI GGNCC 3 cut(s) 565, 653, 1039
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 1 cut(s) 1117
PsuI RGATCY 2 cut(s) 357, 800
PvuII CAGCTG 2 cut(s) 128, 1117
RsaI GTAC 2 cut(s) 809, 914
RsaNI GTAC 2 cut(s) 808, 913
RseI CAYNNNNRTG 2 cut(s) 260, 1008
Rsr2I CGGWCCG 1 cut(s) 565
RsrII CGGWCCG 1 cut(s) 565
SaqAI TTAA 2 cut(s) 80, 1180
SatI GCNGC 5 cut(s) 126, 267, 407, 887, 1115
Sau3AI GATC 9 cut(s) 271, 357, 397, 462, 481, 532, 800, 928, 1065
Sau96I GGNCC 3 cut(s) 565, 653, 1039
SchI GAGTC 1 cut(s) 1080
ScrFI CCNGG 5 cut(s) 158, 187, 426, 1028, 1037
SduI GDGCHC 2 cut(s) 88, 765
SfaNI GCATC 6 cut(s) 110, 194, 216, 735, 792, 831
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 2 cut(s) 565, 1039
SmiMI CAYNNNNRTG 2 cut(s) 260, 1008
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 4 cut(s) 235, 504, 572, 643
SsiI CCGC 4 cut(s) 171, 738, 769, 798
SspI AATATT 1 cut(s) 1096
SspMI CTAG 3 cut(s) 246, 1007, 1100
StyD4I CCNGG 5 cut(s) 156, 185, 424, 1026, 1035
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 3 cut(s) 70, 225, 417
TaqI TCGA 5 cut(s) 21, 369, 465, 792, 822
TaqII GACCGA 1 cut(s) 553
TasI AATT 4 cut(s) 235, 504, 572, 643
TfiI GAWTC 2 cut(s) 597, 1013
Tru1I TTAA 2 cut(s) 80, 1180
Tru9I TTAA 2 cut(s) 80, 1180
TscAI CASTG 1 cut(s) 292
TseI GCWGC 5 cut(s) 125, 266, 406, 886, 1114
TspDTI ATGAA 6 cut(s) 244, 359, 804, 840, 1026, 1048
TspGWI ACGGA 2 cut(s) 789, 795
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 565, 1039
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 3 cut(s) 246, 1007, 1100
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.