MD04G1217500.v1.1

aspartic-type endopeptidase activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
30016625 .. 30017803
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1217500.v1.1.491

Sequence Viewer

Length: 1179 bp
ATGGCATCCACATCCACTACTCTCATACTTCTAACTTTCAGCTTTCTTATTTTCCAATGCCAACCCTTCACCTTGACCGTGAAAAGAGAGTTTTCCGGGTTTTACTACGCGGAGGTCCACCTTGGTAATCCACCGGTGAAGGCCAATTTGGTTATAGACACGGGCAGTGGTCCTGTTTGGGTTCAGACGACTCAGTGCGTCCAATGCTTTAATATCACCTACCCTGGTTTCGATCCAAAAAAATCCTCCACCTTTCGCCCTATGCCTTCGAAACACCCTCTCTGTGTCCCAATCGAGCTCCAACCTGAGGGAGCCTATTGTGAGTATGACATAGGTTACGCCGGTGCTCAGTACACCCGCGGCTACTACGGCATCGACCTCTTCACGTTCAACACTGCTGTAGCGGAACATCAAGAAACCATCGAGGTTGCGTTTGGCCTTGGCCTATTCAACAAAATTCTGGACTTTGCAGACCACGACCACCACCCCAATATCATGGCCGGGGTTCTCGGAATAGGAAGGATCCACCCCTCCAGCTTTCTACTGCAGCTCAGTGCAATCACACAAATGAAGTTCTCGTACTACTTGCCGAGGAGAAACGGAGATGAGGCCGCCCTGCATTTCGGCATCGATGCGGAGCTCCGTCATCATGCCAACGTGCAAACAATCCCCATCCTCGGGTCCGACAATGATTTTTACTACGTCAACATGACAGGAATTAGTGTGGCTGGATCAGTTCTTCCAATAGACCCGGCGTTGTTCAGTTATGCCGGCATGGGAGTTGCCATAGATTCGGGGTCGCTGTACACTATGTTCATTAGCCCTGTGTATAAGATCGTGAAAGAGTCAATCATTGCCTACTTTGAGGAGGAGCTGCAGCTGCATCCCTTGGTCAACAAGAGCAGGTCCCAGATGGACCTTTGCTATGACCTCAGAGAGGTCAAGAAGGCTGTTCGAGGATGGCTGTCCGTGGCTTTTCACTTTGATGGCGGGGTAAATCTTCAGCTCACCGAATCTTTGACGTTCCATGCATTCCATGACCTTGGAGAGTACTGCTTGATGATCAACGAAGGCAGAGAAGTCGGAGGGAACATCCTTGGAGCATACCAACAAATGAACCGCAGGTTCTTCTACGATGTTGGTGCGAGGAAACTATCTTTTGCTCCAGAGGATTGTTGA

Protein Analysis

393

Amino Acids

43.86

Weight (kDa)

5.57

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 35 - 209 3.3e-28 Xylanase inhibitor N-terminal
Asp PF00026 35 - 86 1.5e-08 Eukaryotic aspartyl protease
Asp PF00026 181 - 389 2e-06 Eukaryotic aspartyl protease
TAXi_C PF14541 233 - 388 8.7e-22 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 894, 1113
AccII CGCG 2 cut(s) 110, 360
AciI CCGC 8 cut(s) 110, 358, 360, 404, 612, 635, 990, 1120
AclWI GGATC 4 cut(s) 227, 517, 530, 739
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 986
AfaI GTAC 4 cut(s) 353, 581, 806, 1052
AfiI CCNNNNNNNGG 4 cut(s) 307, 677, 678, 937
AgeI ACCGGT 1 cut(s) 133
AgsI TTSAA 2 cut(s) 391, 451
AjnI CCWGG 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 8 cut(s) 42, 298, 537, 550, 640, 874, 880, 1006
AluI AGCT 8 cut(s) 42, 298, 537, 550, 640, 874, 880, 1006
Alw21I GWGCWC 3 cut(s) 300, 349, 642
AlwI GGATC 4 cut(s) 227, 517, 530, 739
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 5 cut(s) 141, 436, 442, 498, 609
ApeKI GCWGC 4 cut(s) 547, 874, 877, 880
ApoI RAATTY 1 cut(s) 456
AsiGI ACCGGT 1 cut(s) 133
AspS9I GGNCC 5 cut(s) 115, 170, 681, 906, 916
AsuC2I CCSGG 3 cut(s) 97, 502, 752
AsuHPI GGTGA 4 cut(s) 61, 148, 208, 1000
AsuII TTCGAA 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 5 cut(s) 115, 170, 681, 906, 916
AxyI CCTNAGG 1 cut(s) 306
BamHI GGATCC 1 cut(s) 522
BanII GRGCYC 2 cut(s) 300, 642
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
Bbv12I GWGCWC 3 cut(s) 300, 349, 642
BbvI GCAGC 4 cut(s) 559, 861, 867, 889
BccI CCATC 5 cut(s) 428, 680, 907, 954, 980
BceAI ACGGC 1 cut(s) 385
BcgI CGANNNNNNTGC 4 cut(s) 1063, 1097, 1124, 1158
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 1062
BcnI CCSGG 3 cut(s) 97, 502, 752
BfmI CTRYAG 3 cut(s) 399, 545, 875
BfuAI ACCTGC 2 cut(s) 894, 1113
BisI GCNGC 6 cut(s) 361, 548, 612, 875, 878, 881
BlsI GCNGC 6 cut(s) 362, 549, 613, 876, 879, 882
BmcAI AGTACT 1 cut(s) 1052
Bme1390I CCNGG 4 cut(s) 97, 225, 502, 752
Bme18I GGWCC 5 cut(s) 115, 170, 681, 906, 916
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 5 cut(s) 115, 170, 681, 906, 916
BmiI GGNNCC 4 cut(s) 313, 524, 682, 908
BmrFI CCNGG 4 cut(s) 97, 225, 502, 752
BmsI GCATC 5 cut(s) 14, 381, 622, 636, 892
BpmI CTGGAG 2 cut(s) 517, 1149
Bpu14I TTCGAA 1 cut(s) 269
BpuMI CCSGG 3 cut(s) 97, 502, 752
Bsa29I ATCGAT 1 cut(s) 630
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 677, 678, 937
Bse118I RCCGGY 3 cut(s) 133, 341, 770
Bse21I CCTNAGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 630
BseGI GGATG 6 cut(s) 5, 11, 672, 883, 965, 1092
BseLI CCNNNNNNNGG 4 cut(s) 307, 677, 678, 937
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 5 cut(s) 206, 297, 362, 565, 946
BseRI GAGGAG 3 cut(s) 607, 881, 884
BseXI GCAGC 4 cut(s) 559, 861, 867, 889
Bsh1236I CGCG 2 cut(s) 110, 360
BshFI GGCC 5 cut(s) 143, 438, 444, 500, 611
BshTI ACCGGT 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 630
BsiHKAI GWGCWC 3 cut(s) 300, 349, 642
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 6 cut(s) 96, 134, 342, 501, 752, 771
BslFI GGGAC 2 cut(s) 272, 892
BslI CCNNNNNNNGG 4 cut(s) 307, 677, 678, 937
BsmFI GGGAC 2 cut(s) 272, 892
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 5 cut(s) 143, 438, 444, 500, 611
BsoBI CYCGRG 1 cut(s) 677
Bsp119I TTCGAA 1 cut(s) 269
Bsp1286I GDGCHC 3 cut(s) 300, 349, 642
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 5 cut(s) 232, 522, 731, 834, 1062
BspACI CCGC 8 cut(s) 110, 358, 360, 404, 612, 635, 990, 1120
BspANI GGCC 5 cut(s) 143, 438, 444, 500, 611
BspCNI CTCAG 5 cut(s) 205, 298, 361, 564, 945
BspDI ATCGAT 1 cut(s) 630
BspFNI CGCG 2 cut(s) 110, 360
BspLI GGNNCC 4 cut(s) 313, 524, 682, 908
BspMAI CTGCAG 2 cut(s) 549, 879
BspMI ACCTGC 2 cut(s) 894, 1113
BspPI GGATC 4 cut(s) 227, 517, 530, 739
BspT104I TTCGAA 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 3 cut(s) 133, 341, 770
BsrGI TGTACA 1 cut(s) 804
BssAI RCCGGY 3 cut(s) 133, 341, 770
BssMI GATC 5 cut(s) 232, 522, 731, 834, 1062
BssT1I CCWWGG 5 cut(s) 121, 439, 888, 1042, 1096
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 804
BstBI TTCGAA 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 772
BstDEI CTNAG 5 cut(s) 192, 306, 348, 551, 932
BstDSI CCRYGG 2 cut(s) 358, 969
BstENI CCTNNNNNAGG 1 cut(s) 935
BstF5I GGATG 6 cut(s) 5, 11, 672, 883, 965, 1092
BstFNI CGCG 2 cut(s) 110, 360
BstKTI GATC 5 cut(s) 235, 525, 734, 837, 1065
BstMBI GATC 5 cut(s) 232, 522, 731, 834, 1062
BstMWI GCNNNNNNNGC 3 cut(s) 204, 369, 880
BstNI CCWGG 1 cut(s) 225
BstSCI CCNGG 4 cut(s) 95, 223, 500, 750
BstSFI CTRYAG 3 cut(s) 399, 545, 875
BstUI CGCG 2 cut(s) 110, 360
BstV1I GCAGC 4 cut(s) 559, 861, 867, 889
BstX2I RGATCY 1 cut(s) 522
BstXI CCANNNNNNTGG 2 cut(s) 496, 1043
BstYI RGATCY 1 cut(s) 522
Bsu15I ATCGAT 1 cut(s) 630
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 5 cut(s) 143, 438, 444, 500, 611
BsuTUI ATCGAT 1 cut(s) 630
BtgI CCRYGG 2 cut(s) 358, 969
BtsCI GGATG 6 cut(s) 5, 11, 672, 883, 965, 1092
BtsI GCAGTG 2 cut(s) 172, 393
BtsIMutI CAGTG 4 cut(s) 172, 200, 393, 559
BveI ACCTGC 2 cut(s) 894, 1113
Cac8I GCNNGC 1 cut(s) 772
Cfr10I RCCGGY 3 cut(s) 133, 341, 770
Cfr13I GGNCC 5 cut(s) 115, 170, 681, 906, 916
Cfr42I CCGCGG 1 cut(s) 361
ClaI ATCGAT 1 cut(s) 630
CseI GACGC 1 cut(s) 187
Csp6I GTAC 4 cut(s) 352, 580, 805, 1051
CspAI ACCGGT 1 cut(s) 133
CviAII CATG 6 cut(s) 496, 650, 709, 775, 1028, 1037
CviQI GTAC 4 cut(s) 352, 580, 805, 1051
DdeI CTNAG 5 cut(s) 192, 306, 348, 551, 932
DpnI GATC 5 cut(s) 234, 524, 733, 836, 1064
DpnII GATC 5 cut(s) 232, 522, 731, 834, 1062
EaeI YGGCCR 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Ecl136II GAGCTC 2 cut(s) 298, 640
Eco130I CCWWGG 5 cut(s) 121, 439, 888, 1042, 1096
Eco24I GRGCYC 2 cut(s) 300, 642
Eco47I GGWCC 5 cut(s) 115, 170, 681, 906, 916
Eco53kI GAGCTC 2 cut(s) 298, 640
Eco57I CTGAAG 1 cut(s) 986
Eco81I CCTNAGG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 677
EcoICRI GAGCTC 2 cut(s) 298, 640
EcoNI CCTNNNNNAGG 1 cut(s) 935
EcoO109I RGGNCCY 1 cut(s) 906
EcoRII CCWGG 1 cut(s) 223
EcoT14I CCWWGG 5 cut(s) 121, 439, 888, 1042, 1096
EcoT22I ATGCAT 1 cut(s) 1033
EcoT38I GRGCYC 2 cut(s) 300, 642
ErhI CCWWGG 5 cut(s) 121, 439, 888, 1042, 1096
FaeI CATG 6 cut(s) 499, 653, 712, 778, 1031, 1040
FaqI GGGAC 2 cut(s) 272, 892
FatI CATG 6 cut(s) 495, 649, 708, 774, 1027, 1036
FauI CCCGC 2 cut(s) 365, 983
FbaI TGATCA 1 cut(s) 1062
Fnu4HI GCNGC 6 cut(s) 361, 548, 612, 875, 878, 881
FokI GGATG 4 cut(s) 659, 870, 972, 1079
FriOI GRGCYC 2 cut(s) 300, 642
Fsp4HI GCNGC 6 cut(s) 361, 548, 612, 875, 878, 881
GluI GCNGC 6 cut(s) 361, 548, 612, 875, 878, 881
GsuI CTGGAG 2 cut(s) 517, 1149
HaeIII GGCC 5 cut(s) 143, 438, 444, 500, 611
HapII CCGG 6 cut(s) 96, 134, 342, 501, 752, 771
HgaI GACGC 1 cut(s) 187
Hin1II CATG 6 cut(s) 499, 653, 712, 778, 1031, 1040
HincII GTYRAC 2 cut(s) 706, 895
HindII GTYRAC 2 cut(s) 706, 895
HinfI GANTC 4 cut(s) 190, 791, 845, 1013
HpaII CCGG 6 cut(s) 96, 134, 342, 501, 752, 771
HphI GGTGA 4 cut(s) 61, 148, 208, 1000
Hpy166II GTNNAC 5 cut(s) 118, 354, 706, 807, 895
Hpy188I TCNGA 5 cut(s) 186, 512, 685, 935, 1085
Hpy188III TCNNGA 5 cut(s) 413, 461, 838, 943, 1166
Hpy8I GTNNAC 5 cut(s) 118, 354, 706, 807, 895
HpyAV CCTTC 6 cut(s) 76, 133, 276, 513, 940, 1064
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 4 cut(s) 386, 657, 702, 1022
HpyCH4V TGCA 8 cut(s) 470, 547, 557, 619, 661, 877, 883, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 369, 880
HpyF3I CTNAG 5 cut(s) 192, 306, 348, 551, 932
HpySE526I ACGT 4 cut(s) 386, 657, 702, 1022
Hsp92II CATG 6 cut(s) 499, 653, 712, 778, 1031, 1040
KroI GCCGGC 1 cut(s) 770
KroNI GCCGGC 1 cut(s) 772
Ksp22I TGATCA 1 cut(s) 1062
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 5 cut(s) 232, 522, 731, 834, 1062
LmnI GCTCC 7 cut(s) 303, 311, 637, 645, 871, 1100, 1168
Lsp1109I GCAGC 4 cut(s) 559, 861, 867, 889
LweI GCATC 5 cut(s) 14, 381, 622, 636, 892
MaeII ACGT 4 cut(s) 386, 657, 702, 1022
MaeIII GTNAC 1 cut(s) 335
MalI GATC 5 cut(s) 234, 524, 733, 836, 1064
MboI GATC 5 cut(s) 232, 522, 731, 834, 1062
MboII GAAGA 4 cut(s) 373, 731, 992, 1120
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 3 cut(s) 300, 349, 642
MluCI AATT 3 cut(s) 145, 456, 717
MlyI GAGTC 2 cut(s) 184, 854
MmeI TCCRAC 3 cut(s) 325, 708, 1063
Mph1103I ATGCAT 1 cut(s) 1033
MroNI GCCGGC 1 cut(s) 770
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 2 cut(s) 566, 984
MspA1I CMGCKG 2 cut(s) 360, 880
MspI CCGG 6 cut(s) 96, 134, 342, 501, 752, 771
MspR9I CCNGG 4 cut(s) 97, 225, 502, 752
Mva1269I GAATGC 1 cut(s) 1031
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 2 cut(s) 110, 360
MwoI GCNNNNNNNGC 3 cut(s) 204, 369, 880
NaeI GCCGGC 1 cut(s) 772
NciI CCSGG 3 cut(s) 97, 502, 752
NdeII GATC 5 cut(s) 232, 522, 731, 834, 1062
NgoMIV GCCGGC 1 cut(s) 770
NlaIII CATG 6 cut(s) 499, 653, 712, 778, 1031, 1040
NlaIV GGNNCC 4 cut(s) 313, 524, 682, 908
NmeAIII GCCGAG 1 cut(s) 615
NsiI ATGCAT 1 cut(s) 1033
NspV TTCGAA 1 cut(s) 269
PctI GAATGC 1 cut(s) 1031
PdiI GCCGGC 1 cut(s) 772
PfeI GAWTC 2 cut(s) 791, 1013
PinAI ACCGGT 1 cut(s) 133
PkrI GCNGC 6 cut(s) 362, 549, 613, 876, 879, 882
PleI GAGTC 2 cut(s) 184, 853
PpsI GAGTC 2 cut(s) 184, 853
PpuMI RGGWCCY 1 cut(s) 906
Psp124BI GAGCTC 2 cut(s) 300, 642
Psp5II RGGWCCY 1 cut(s) 906
Psp6I CCWGG 1 cut(s) 223
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 4 cut(s) 313, 524, 682, 908
PspPI GGNCC 5 cut(s) 115, 170, 681, 906, 916
PspPPI RGGWCCY 1 cut(s) 906
PsrI GAACNNNNNNTAC 2 cut(s) 797, 829
PstI CTGCAG 2 cut(s) 549, 879
PsuI RGATCY 1 cut(s) 522
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 4 cut(s) 353, 581, 806, 1052
RsaNI GTAC 4 cut(s) 352, 580, 805, 1051
RseI CAYNNNNRTG 2 cut(s) 566, 984
SacI GAGCTC 2 cut(s) 300, 642
SacII CCGCGG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 6 cut(s) 361, 548, 612, 875, 878, 881
Sau3AI GATC 5 cut(s) 232, 522, 731, 834, 1062
Sau96I GGNCC 5 cut(s) 115, 170, 681, 906, 916
ScaI AGTACT 1 cut(s) 1052
SchI GAGTC 2 cut(s) 184, 854
ScrFI CCNGG 4 cut(s) 97, 225, 502, 752
SduI GDGCHC 3 cut(s) 300, 349, 642
SfaNI GCATC 5 cut(s) 14, 381, 622, 636, 892
SfcI CTRYAG 3 cut(s) 399, 545, 875
Sfr303I CCGCGG 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 269
SgrAI CRCCGGYG 2 cut(s) 133, 341
SgrBI CCGCGG 1 cut(s) 361
SinI GGWCC 5 cut(s) 115, 170, 681, 906, 916
SmiMI CAYNNNNRTG 2 cut(s) 566, 984
Sse9I AATT 3 cut(s) 145, 456, 717
SsiI CCGC 8 cut(s) 110, 358, 360, 404, 612, 635, 990, 1120
SstI GAGCTC 2 cut(s) 300, 642
StyD4I CCNGG 4 cut(s) 95, 223, 500, 750
StyI CCWWGG 5 cut(s) 121, 439, 888, 1042, 1096
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 4 cut(s) 389, 660, 705, 1025
TaqI TCGA 7 cut(s) 231, 269, 294, 375, 423, 630, 955
TasI AATT 3 cut(s) 145, 456, 717
TatI WGTACW 3 cut(s) 351, 804, 1050
TauI GCSGC 2 cut(s) 363, 614
TfiI GAWTC 2 cut(s) 791, 1013
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 4 cut(s) 172, 200, 400, 559
TseI GCWGC 4 cut(s) 547, 874, 877, 880
TspDTI ATGAA 3 cut(s) 584, 805, 1130
TspGWI ACGGA 3 cut(s) 615, 632, 958
TspRI CASTG 4 cut(s) 172, 200, 400, 559
VpaK11BI GGWCC 5 cut(s) 115, 170, 681, 906, 916
XagI CCTNNNNNAGG 1 cut(s) 935
XapI RAATTY 1 cut(s) 456
ZrmI AGTACT 1 cut(s) 1052
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.