Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005185

Physical Location & Seq

Genomic Coordinates Reverse (-)

4185952 .. 4187004

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTACATTGGCACACCTCCTCAGAAAACCAACTTGGCCTTGGACACCGGTAGCACTCTAACGTGGGTTCAATGCGAAGGATGCAAGTCGTGCTTCAAATTGTCAATGCCTAACTTCAACATCAGGAGATCAACCACTTCCCGGCCCATGCTGATGATCACCCACTTTGTGTTCCTCCAAACCTTGGCCCTGGGCCAAAATTGTGTTTATGGGTTGTTCTACTATGATCGCAGTTCCACTTACGGCCCCTTTGGATTTGATACGTTCACATTTTTATCTGAGCGAAGGCAACTAGCTATCCCTAATGTGGCATTTGGGTGGGGACTCTTCAATAAGGTGAACTTCAATGACTATTTTCATGGTCATGATAATCCAATAGGAGGGATTTTGGGGTTAGGCAGGGGTCACCCCACTGGTATTCTACAACAACTAAACCAAATCACCCTTCGAAGATTTTCGTATTGCCTTCCACCACAATTTGAGGCCCAATCATTGCTACATTTTGGTGAGGGTGCACAAATTGGAGGTCCTAGTGTTGGTAGCACACCCATTTTGGGCGGTCCAGATGACTATTATTTCACGAAACTGGATGCTATAAGTTTGAATGGACAACGTCTCCAAATCGATCCAAGTTTGTTCATGGCAGGTGGAAAAGGAATGGCAGTTGATTCAGGATCTCCATATAGCCATATCGTGGCAGAGGCATTCAAGGCCTTTGAACATCACAATGAGTTTTGCATGACCATATTGTCAATGGACCAAAGTGATGGTCTAAACATTCTGGGCGCGGCTCAGCAGGTCAACTATAGGTTCTTGTTCGATGTCGCTGCGCTGAGGTTGTCGTTTTCTCCAGAGAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

288

Amino Acids

31.79

Weight (kDa)

6.43

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005185)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34990 FvH4_3g35000 FvH4_5g18970 FvH4_6g04130 FvH4_6g08260
malus_domestica	MD02G1129300.v1.1 MD04G1217500.v1.1 MD12G1123700.v1.1 MD12G1232300.v1.1
prunus_persica	Prupe.5G037200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452701 RchiOBHm_Chr3g0452711
rosa_laevigata	RLG00000000901 RLG00000025573
rosa_roxburghii	Rroxscaffold_3G00222790 Rroxscaffold_6G00429720
rosa_rugosa	Rorug02G0642700 Rorug02G0642800 Rorug07G0314700
rosa_samantha	Rh3BG047400 Rh3BG047500 Rh3CG045900 Rh3CG046000 Rh3DG046200 Rh3DG046300 Rh7AG470200 Rh7AG470300 Rh7BG440300
rosa_wichuraiana	Rw3G003510 Rw3G003520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	635
AasI	GACNNNNNNGTC	1 cut(s)	748
Acc36I	ACCTGC	2 cut(s)	635, 787
AccB7I	CCANNNNNTGG	2 cut(s)	184, 694
AccII	CGCG	1 cut(s)	788
AciI	CCGC	2 cut(s)	558, 788
AclWI	GGATC	2 cut(s)	620, 682
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	7 cut(s)	141, 184, 307, 380, 536, 554, 694
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	8 cut(s)	71, 97, 118, 331, 346, 604, 709, 719
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 429, 461
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	1 cut(s)	620
Alw44I	GTGCAC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	620, 682
AoxI	GGCC	7 cut(s)	36, 143, 186, 193, 244, 483, 711
ApaLI	GTGCAC	1 cut(s)	513
ApeKI	GCWGC	1 cut(s)	827
ArsI	GACNNNNNNTTYG	4 cut(s)	511, 543, 754, 786
AsiGI	ACCGGT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	2 cut(s)	788, 832
AspS9I	GGNCC	8 cut(s)	144, 187, 193, 245, 484, 527, 560, 757
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	5 cut(s)	151, 349, 398, 433, 518
AsuII	TTCGAA	1 cut(s)	448
AvaII	GGWCC	3 cut(s)	527, 560, 757
BaeGI	GKGCMC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	833
BbvI	GCAGC	1 cut(s)	814
BccI	CCATC	1 cut(s)	761
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	809, 843
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	2 cut(s)	293, 531
BfmI	CTRYAG	1 cut(s)	805
BfuAI	ACCTGC	2 cut(s)	635, 787
BisI	GCNGC	2 cut(s)	789, 828
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	2 cut(s)	790, 829
Bme1390I	CCNGG	2 cut(s)	142, 191
Bme18I	GGWCC	3 cut(s)	527, 560, 757
BmgT120I	GGNCC	8 cut(s)	144, 187, 193, 245, 484, 527, 560, 757
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	142, 191
BmsI	GCATC	2 cut(s)	71, 580
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	792
Bpu14I	TTCGAA	1 cut(s)	448
BpuMI	CCSGG	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	624
BsaJI	CCNNGG	4 cut(s)	39, 183, 189, 190
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	7 cut(s)	141, 184, 307, 380, 536, 554, 694
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	418, 591
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	4 cut(s)	39, 183, 189, 190
BseGI	GGATG	2 cut(s)	86, 595
BseLI	CCNNNNNNNGG	7 cut(s)	141, 184, 307, 380, 536, 554, 694
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	4 cut(s)	35, 270, 806, 824
BseNI	ACTGG	2 cut(s)	418, 591
BseRI	GAGGAG	1 cut(s)	9
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	1 cut(s)	814
Bsh1236I	CGCG	1 cut(s)	788
BshFI	GGCC	7 cut(s)	38, 145, 188, 195, 246, 485, 713
BshTI	ACCGGT	1 cut(s)	47
BshVI	ATCGAT	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	48, 142
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	7 cut(s)	141, 184, 307, 380, 536, 554, 694
BsmAI	GTCTC	1 cut(s)	620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	704
BsnI	GGCC	7 cut(s)	38, 145, 188, 195, 246, 485, 713
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	5 cut(s)	128, 156, 226, 625, 674
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	2 cut(s)	558, 788
BspANI	GGCC	7 cut(s)	38, 145, 188, 195, 246, 485, 713
BspCNI	CTCAG	4 cut(s)	34, 271, 805, 825
BspDI	ATCGAT	1 cut(s)	624
BspFNI	CGCG	1 cut(s)	788
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	2 cut(s)	635, 787
BspPI	GGATC	2 cut(s)	620, 682
BspT104I	TTCGAA	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	47
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	418, 591
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	4 cut(s)	39, 183, 189, 190
BssMI	GATC	5 cut(s)	128, 156, 226, 625, 674
BssT1I	CCWWGG	2 cut(s)	39, 183
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	332
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	448
BstDEI	CTNAG	4 cut(s)	21, 279, 792, 833
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	86, 595
BstFNI	CGCG	1 cut(s)	788
BstHHI	GCGC	2 cut(s)	788, 832
BstKTI	GATC	5 cut(s)	131, 159, 229, 628, 677
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	5 cut(s)	128, 156, 226, 625, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 90, 710
BstNI	CCWGG	1 cut(s)	191
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	140, 189
BstSFI	CTRYAG	1 cut(s)	805
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	1 cut(s)	814
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	674
Bsu15I	ATCGAT	1 cut(s)	624
BsuRI	GGCC	7 cut(s)	38, 145, 188, 195, 246, 485, 713
BsuTUI	ATCGAT	1 cut(s)	624
BtsCI	GGATG	2 cut(s)	86, 595
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	2 cut(s)	635, 787
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	2 cut(s)	788, 832
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	8 cut(s)	144, 187, 193, 245, 484, 527, 560, 757
ClaI	ATCGAT	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	47
CviAII	CATG	5 cut(s)	148, 359, 365, 640, 739
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	21, 279, 792, 833
DpnI	GATC	5 cut(s)	130, 158, 228, 627, 676
DpnII	GATC	5 cut(s)	128, 156, 226, 625, 674
DraIII	CACNNNGTG	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	39, 183
Eco147I	AGGCCT	1 cut(s)	713
Eco47I	GGWCC	3 cut(s)	527, 560, 757
Eco91I	GGTNACC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	527
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	39, 183
ErhI	CCWWGG	2 cut(s)	39, 183
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	5 cut(s)	151, 362, 368, 643, 742
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 326, 358
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	5 cut(s)	147, 358, 364, 639, 738
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	789, 828
FokI	GGATG	2 cut(s)	93, 602
Fsp4HI	GCNGC	2 cut(s)	789, 828
FspBI	CTAG	2 cut(s)	293, 531
GlaI	GCGC	2 cut(s)	787, 831
GluI	GCNGC	2 cut(s)	789, 828
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	7 cut(s)	38, 145, 188, 195, 246, 485, 713
HapII	CCGG	2 cut(s)	48, 142
HhaI	GCGC	2 cut(s)	788, 832
Hin1II	CATG	5 cut(s)	151, 362, 368, 643, 742
Hin6I	GCGC	2 cut(s)	786, 830
HinP1I	GCGC	2 cut(s)	786, 830
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	2 cut(s)	324, 668
HpaII	CCGG	2 cut(s)	48, 142
HphI	GGTGA	5 cut(s)	151, 349, 398, 433, 518
Hpy166II	GTNNAC	4 cut(s)	267, 340, 515, 802
Hpy188I	TCNGA	2 cut(s)	24, 280
Hpy188III	TCNNGA	6 cut(s)	124, 365, 563, 580, 672, 851
Hpy8I	GTNNAC	4 cut(s)	267, 340, 515, 802
HpyAV	CCTTC	4 cut(s)	71, 279, 455, 476
HpyCH4IV	ACGT	3 cut(s)	62, 263, 613
HpyCH4V	TGCA	3 cut(s)	84, 515, 738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 90, 710
HpyF3I	CTNAG	4 cut(s)	21, 279, 792, 833
HpySE526I	ACGT	3 cut(s)	62, 263, 613
Hsp92II	CATG	5 cut(s)	151, 362, 368, 643, 742
HspAI	GCGC	2 cut(s)	786, 830
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	5 cut(s)	128, 156, 226, 625, 674
Lsp1109I	GCAGC	1 cut(s)	814
LweI	GCATC	2 cut(s)	71, 580
MaeI	CTAG	2 cut(s)	293, 531
MaeII	ACGT	3 cut(s)	62, 263, 613
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	130, 158, 228, 627, 676
MboI	GATC	5 cut(s)	128, 156, 226, 625, 674
MboII	GAAGA	2 cut(s)	319, 462
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	5 cut(s)	98, 199, 476, 519, 856
MlyI	GAGTC	1 cut(s)	318
MnlI	CCTC	9 cut(s)	27, 30, 185, 374, 475, 502, 518, 694, 828
MroXI	GAANNNNTTC	1 cut(s)	454
MslI	CAYNNNNRTG	5 cut(s)	152, 316, 363, 504, 726
MspI	CCGG	2 cut(s)	48, 142
MspR9I	CCNGG	2 cut(s)	142, 191
Mva1269I	GAATGC	1 cut(s)	704
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	788
MwoI	GCNNNNNNNGC	3 cut(s)	81, 90, 710
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	5 cut(s)	128, 156, 226, 625, 674
NlaIII	CATG	5 cut(s)	151, 362, 368, 643, 742
NlaIV	GGNNCC	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	404
NspV	TTCGAA	1 cut(s)	448
PagI	TCATGA	1 cut(s)	364
PaqCI	CACCTGC	1 cut(s)	635
PasI	CCCWGGG	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	713
PctI	GAATGC	1 cut(s)	704
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	668
PflFI	GACNNNGTC	1 cut(s)	612
PflMI	CCANNNNNTGG	2 cut(s)	184, 694
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	790, 829
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PpuMI	RGGWCCY	1 cut(s)	527
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	189
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	8 cut(s)	144, 187, 193, 245, 484, 527, 560, 757
PspPPI	RGGWCCY	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	674
PsyI	GACNNNGTC	1 cut(s)	612
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	5 cut(s)	152, 316, 363, 504, 726
SatI	GCNGC	2 cut(s)	789, 828
Sau3AI	GATC	5 cut(s)	128, 156, 226, 625, 674
Sau96I	GGNCC	8 cut(s)	144, 187, 193, 245, 484, 527, 560, 757
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	2 cut(s)	142, 191
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	2 cut(s)	71, 580
SfcI	CTRYAG	1 cut(s)	805
SfuI	TTCGAA	1 cut(s)	448
SinI	GGWCC	3 cut(s)	527, 560, 757
SmiMI	CAYNNNNRTG	5 cut(s)	152, 316, 363, 504, 726
Sse9I	AATT	5 cut(s)	98, 199, 476, 519, 856
SseBI	AGGCCT	1 cut(s)	713
SsiI	CCGC	2 cut(s)	558, 788
SspMI	CTAG	2 cut(s)	293, 531
StuI	AGGCCT	1 cut(s)	713
StyD4I	CCNGG	2 cut(s)	140, 189
StyI	CCWWGG	2 cut(s)	39, 183
TaiI	ACGT	3 cut(s)	65, 266, 616
TaqI	TCGA	3 cut(s)	448, 624, 819
TasI	AATT	5 cut(s)	98, 199, 476, 519, 856
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	1 cut(s)	668
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	827
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	347, 628
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	612
Van91I	CCANNNNNTGG	2 cut(s)	184, 694
VneI	GTGCAC	1 cut(s)	513
VpaK11BI	GGWCC	3 cut(s)	527, 560, 757
XcmI	CCANNNNNNNNNTGG	2 cut(s)	37, 751
XmnI	GAANNNNTTC	1 cut(s)	454
XspI	CTAG	2 cut(s)	293, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.