RLG00000000901

aspartic-type endopeptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005185
Physical Location & Seq
Forward (+)
7745151 .. 7747731
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000901

Sequence Viewer

Length: 1008 bp
ATGTCTGGCAATATTAATGTCCCCATAGCTTTTCTCATGCTCATAGCCATTGCCCGCCAAAGCCAGGGATTTGGCATCAGCCTGATTCCAGTGGTGTCTCCCAAATTGATTGCCGTTTTTCCCACGAATATCACCCTAGTCGAAATACACCAAAACCTGGTCCAACTATCAAAAGCTCACGCCCTTCGCTTCATGAGAGTATACCCTGCAGACAGAAACACTACTTCAACTATACAATCCCCAGTCAAAAGGGCTTTCAGTGGTTATCTGTGCGTTGAAATCTACATAGGTAGCCCTTCCGTGAAGTCAAACTTGGCACATTGCACCCATGTTATGTCACTACCGTTGTCCAAGGCCAAGTTCGACCGCAGGAGATCCGATACCCAGGCTAGTGAAGGTGAGGTTGGGTTTGACACCTTTACATTCTTTTCTGAAAATGGCCAGCCGCAACCAATTCCACAAGTGGCACTTGGATCTGGACTCATCAATGATATTGACGTCGGGCCAGAAGGTCCACTTGGTAATCCGATTGGAGGAATTCTTGGGTTAGAGAAAGAACTATGTGGTCCTGGTGTCGAGGTGACACCCTTTTTGGATGACTACTATAGGCTGAAGCTAAAAGGGATCAGTATCAATGGTGGGCTTCTCCCAATTGATCCAGCATTATTTATGCCACCGGCAAGTGACGGTTTTTATGGAGATTCAGGAACAGCAAACAATCTTCTTGTGGGGAAAGTTTACGACATTTTGCAACAAGGTATGGTGGACTACTTTCAAGACTATTATGGCTGGCTTCCTCTGAACAGAACTGCTAGACTTGACCACTATGAGCTTTGCCCTGAGTTACCCAGTGAAGGAAGATGCTATGTTCATTTTGAAGGCACTGCCAATCTTGAGCTTGATGAACATAGCATCTTCAAGGTGTTTGACCAAGCAAATCAGTTCTGCATTACGATACTACGACTTGGAAGTAAGGAGGGTCCCAGCATTTTGGGCGCGCTGCAGTAG

Protein Analysis

336

Amino Acids

36.62

Weight (kDa)

5.38

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 202 - 335 4.1e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 201
AccII CGCG 1 cut(s) 998
AciI CCGC 3 cut(s) 55, 367, 446
AclWI GGATC 4 cut(s) 369, 481, 632, 650
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 498
AfiI CCNNNNNNNGG 4 cut(s) 64, 157, 533, 854
AgsI TTSAA 5 cut(s) 228, 278, 776, 878, 919
AjnI CCWGG 4 cut(s) 63, 156, 384, 568
AjuI GAANNNNNNNTTGG 8 cut(s) 296, 328, 344, 376, 387, 419, 501, 533
AluBI AGCT 5 cut(s) 29, 176, 616, 832, 898
AluI AGCT 5 cut(s) 29, 176, 616, 832, 898
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 4 cut(s) 369, 481, 632, 650
AoxI GGCC 3 cut(s) 354, 439, 503
ApeKI GCWGC 1 cut(s) 1000
ApoI RAATTY 1 cut(s) 537
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
AseI ATTAAT 1 cut(s) 15
AspLEI GCGC 2 cut(s) 998, 1000
AspS9I GGNCC 5 cut(s) 160, 503, 512, 566, 980
AsuHPI GGTGA 3 cut(s) 124, 410, 592
AvaII GGWCC 4 cut(s) 160, 512, 566, 980
BalI TGGCCA 1 cut(s) 441
BbvI GCAGC 1 cut(s) 987
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 4 cut(s) 65, 158, 386, 570
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 137, 390, 813
BfmI CTRYAG 3 cut(s) 207, 604, 1001
BisI GCNGC 2 cut(s) 446, 1001
BlsI GCNGC 2 cut(s) 447, 1002
Bme1390I CCNGG 4 cut(s) 65, 158, 386, 570
Bme18I GGWCC 4 cut(s) 160, 512, 566, 980
BmgT120I GGNCC 5 cut(s) 160, 503, 512, 566, 980
BmiI GGNNCC 2 cut(s) 981, 982
BmrFI CCNGG 4 cut(s) 65, 158, 386, 570
BmrI ACTGGG 2 cut(s) 236, 843
BmsI GCATC 3 cut(s) 84, 851, 921
BmuI ACTGGG 2 cut(s) 236, 843
BpuEI CTTGAG 1 cut(s) 914
BsaBI GATNNNNATC 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 64, 351, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 157, 533, 854
Bse118I RCCGGY 1 cut(s) 676
Bse1I ACTGG 3 cut(s) 89, 242, 849
Bse3DI GCAATG 2 cut(s) 48, 319
Bse8I GATNNNNATC 1 cut(s) 629
BseBI CCWGG 4 cut(s) 65, 158, 386, 570
BseDI CCNNGG 3 cut(s) 64, 351, 384
BseGI GGATG 1 cut(s) 601
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 4 cut(s) 64, 157, 533, 854
BseMI GCAATG 2 cut(s) 48, 319
BseMII CTCAG 1 cut(s) 831
BseNI ACTGG 3 cut(s) 89, 242, 849
BsePI GCGCGC 1 cut(s) 996
BseXI GCAGC 1 cut(s) 987
BseYI CCCAGC 1 cut(s) 983
Bsh1236I CGCG 1 cut(s) 998
Bsh1285I CGRYCG 1 cut(s) 367
BshFI GGCC 3 cut(s) 356, 441, 505
BsiEI CGRYCG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 2 cut(s) 5, 966
BslI CCNNNNNNNGG 4 cut(s) 64, 157, 533, 854
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 5, 966
BsnI GGCC 3 cut(s) 356, 441, 505
Bsp143I GATC 4 cut(s) 374, 473, 624, 655
BspACI CCGC 3 cut(s) 55, 367, 446
BspANI GGCC 3 cut(s) 356, 441, 505
BspCNI CTCAG 1 cut(s) 832
BspFNI CGCG 1 cut(s) 998
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 981, 982
BspMAI CTGCAG 2 cut(s) 211, 1005
BspPI GGATC 4 cut(s) 369, 481, 632, 650
BsrDI GCAATG 2 cut(s) 48, 319
BsrFI RCCGGY 1 cut(s) 676
BsrI ACTGG 3 cut(s) 89, 242, 849
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 3 cut(s) 64, 351, 384
BssHII GCGCGC 1 cut(s) 996
BssMI GATC 4 cut(s) 374, 473, 624, 655
BssNAI GTATAC 1 cut(s) 202
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 202
Bst2UI CCWGG 4 cut(s) 65, 158, 386, 570
Bst4CI ACNGT 2 cut(s) 345, 689
BstACI GRCGYC 1 cut(s) 498
BstC8I GCNNGC 4 cut(s) 55, 443, 791, 998
BstDEI CTNAG 1 cut(s) 840
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 1 cut(s) 998
BstHHI GCGC 2 cut(s) 998, 1000
BstKTI GATC 4 cut(s) 377, 476, 627, 658
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 374, 473, 624, 655
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 993
BstNI CCWGG 4 cut(s) 65, 158, 386, 570
BstSCI CCNGG 4 cut(s) 63, 156, 384, 568
BstSFI CTRYAG 3 cut(s) 207, 604, 1001
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 1 cut(s) 987
BstX2I RGATCY 2 cut(s) 374, 473
BstXI CCANNNNNNTGG 2 cut(s) 71, 991
BstYI RGATCY 2 cut(s) 374, 473
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 3 cut(s) 356, 441, 505
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 1 cut(s) 882
BtsIMutI CAGTG 4 cut(s) 96, 265, 856, 882
Cac8I GCNNGC 4 cut(s) 55, 443, 791, 998
CciI TCATGA 1 cut(s) 192
CfoI GCGC 2 cut(s) 998, 1000
Cfr10I RCCGGY 1 cut(s) 676
Cfr13I GGNCC 5 cut(s) 160, 503, 512, 566, 980
CsiI ACCWGGT 1 cut(s) 156
CviAII CATG 3 cut(s) 37, 193, 329
DdeI CTNAG 1 cut(s) 840
DpnI GATC 4 cut(s) 376, 475, 626, 657
DpnII GATC 4 cut(s) 374, 473, 624, 655
EaeI YGGCCR 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 351
Eco47I GGWCC 4 cut(s) 160, 512, 566, 980
Eco57I CTGAAG 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 980
EcoRI GAATTC 1 cut(s) 537
EcoRII CCWGG 4 cut(s) 63, 156, 384, 568
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 3 cut(s) 40, 196, 332
FalI AAGNNNNNCTT 6 cut(s) 296, 328, 453, 485, 501, 533
FaqI GGGAC 2 cut(s) 5, 966
FatI CATG 3 cut(s) 36, 192, 328
FauI CCCGC 1 cut(s) 62
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 446, 1001
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 2 cut(s) 446, 1001
FspBI CTAG 3 cut(s) 137, 390, 813
GlaI GCGC 2 cut(s) 997, 999
GluI GCNGC 2 cut(s) 446, 1001
GsaI CCCAGC 1 cut(s) 987
HaeIII GGCC 3 cut(s) 356, 441, 505
HapII CCGG 1 cut(s) 677
HhaI GCGC 2 cut(s) 998, 1000
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 3 cut(s) 40, 196, 332
Hin6I GCGC 2 cut(s) 996, 998
HinP1I GCGC 2 cut(s) 996, 998
HinfI GANTC 3 cut(s) 85, 480, 701
HpaII CCGG 1 cut(s) 677
HphI GGTGA 3 cut(s) 124, 410, 592
Hpy166II GTNNAC 4 cut(s) 202, 515, 739, 766
Hpy188I TCNGA 4 cut(s) 379, 433, 528, 801
Hpy188III TCNNGA 5 cut(s) 193, 477, 705, 776, 893
Hpy8I GTNNAC 4 cut(s) 202, 515, 739, 766
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 6 cut(s) 194, 306, 389, 503, 848, 872
HpyCH4III ACNGT 2 cut(s) 345, 689
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 5 cut(s) 209, 324, 751, 948, 1003
HpyF10VI GCNNNNNNNGC 1 cut(s) 993
HpyF3I CTNAG 1 cut(s) 840
HpySE526I ACGT 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 3 cut(s) 40, 196, 332
HspAI GCGC 2 cut(s) 996, 998
KflI GGGWCCC 1 cut(s) 980
Kzo9I GATC 4 cut(s) 374, 473, 624, 655
Lsp1109I GCAGC 1 cut(s) 987
LweI GCATC 3 cut(s) 84, 851, 921
MabI ACCWGGT 1 cut(s) 156
MaeI CTAG 3 cut(s) 137, 390, 813
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 4 cut(s) 336, 580, 683, 843
MalI GATC 4 cut(s) 376, 475, 626, 657
MboI GATC 4 cut(s) 374, 473, 624, 655
MboII GAAGA 3 cut(s) 713, 870, 907
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 2 cut(s) 374, 473
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 4 cut(s) 104, 453, 537, 651
MluNI TGGCCA 1 cut(s) 441
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 5 cut(s) 394, 527, 571, 807, 970
Mox20I TGGCCA 1 cut(s) 441
MscI TGGCCA 1 cut(s) 441
MseI TTAA 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 4 cut(s) 65, 158, 386, 570
MunI CAATTG 1 cut(s) 651
MvaI CCWGG 4 cut(s) 65, 158, 386, 570
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 1 cut(s) 993
NdeII GATC 4 cut(s) 374, 473, 624, 655
NlaIII CATG 3 cut(s) 40, 196, 332
NlaIV GGNNCC 2 cut(s) 981, 982
NmuCI GTSAC 3 cut(s) 336, 580, 683
PagI TCATGA 1 cut(s) 192
PauI GCGCGC 1 cut(s) 996
PfeI GAWTC 2 cut(s) 85, 701
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 2 cut(s) 447, 1002
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 980
PshBI ATTAAT 1 cut(s) 15
Psp5II RGGWCCY 1 cut(s) 980
Psp6I CCWGG 4 cut(s) 63, 156, 384, 568
PspFI CCCAGC 1 cut(s) 983
PspGI CCWGG 4 cut(s) 63, 156, 384, 568
PspN4I GGNNCC 2 cut(s) 981, 982
PspPI GGNCC 5 cut(s) 160, 503, 512, 566, 980
PspPPI RGGWCCY 1 cut(s) 980
PstI CTGCAG 2 cut(s) 211, 1005
PsuI RGATCY 2 cut(s) 374, 473
PteI GCGCGC 1 cut(s) 996
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 446, 1001
Sau3AI GATC 4 cut(s) 374, 473, 624, 655
Sau96I GGNCC 5 cut(s) 160, 503, 512, 566, 980
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 4 cut(s) 65, 158, 386, 570
SexAI ACCWGGT 1 cut(s) 156
SfaNI GCATC 3 cut(s) 84, 851, 921
SfcI CTRYAG 3 cut(s) 207, 604, 1001
SinI GGWCC 4 cut(s) 160, 512, 566, 980
SmlI CTYRAG 1 cut(s) 893
SmoI CTYRAG 1 cut(s) 893
Sse9I AATT 4 cut(s) 104, 453, 537, 651
SsiI CCGC 3 cut(s) 55, 367, 446
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 137, 390, 813
StyD4I CCNGG 4 cut(s) 63, 156, 384, 568
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 2 cut(s) 345, 689
TaiI ACGT 1 cut(s) 501
TaqI TCGA 3 cut(s) 141, 363, 576
TasI AATT 4 cut(s) 104, 453, 537, 651
TauI GCSGC 1 cut(s) 448
TfiI GAWTC 2 cut(s) 85, 701
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 4 cut(s) 96, 265, 856, 889
TseFI GTSAC 3 cut(s) 336, 580, 683
TseI GCWGC 1 cut(s) 1000
Tsp45I GTSAC 3 cut(s) 336, 580, 683
TspDTI ATGAA 3 cut(s) 181, 860, 918
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 4 cut(s) 96, 265, 856, 889
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 4 cut(s) 160, 512, 566, 980
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 3 cut(s) 137, 390, 813
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.