Rorug07G0314700

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000222
Physical Location & Seq
Reverse (-)
31728749 .. 31730658
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0314700.1

Sequence Viewer

Length: 657 bp
ATGAGCTCGGTGGCATCTTGCATTGGCACTTGCAATCCCAGAAAGCTCAGAACACTCGGTACTCTACCATCGAAGGATTTCAATGCACCTGAAACGTCAAGAATAAAAATCTTAAGCCAGGCCCAGAAAAGTTCACCTTCTTCTGGACAGGTTCTGCAGCTATATAATGAGAAGCCAAGTTTATTAGGGAGAAGAGAAGCAATTGGTTTTGGCTTCTGCTTTGGCCTTGTTGATGTGCTCTTGCCAGGTCAACCCACTGAAGCAGCTGAAGTTGCTCCTTGTGAATTTACTGTAGCTCCTTCTGGACTTGCTTTCTGTGACAAAGTAGTAGGGAAGGGAGCTGAGGCTGTTGAGGGACAGATGATTAAGGCACACTACACTGGGAAATTGGAGAATGGCAAGGTGTTCGATAGTAGCTATAATCGTGGGAAGCCCCTTACATTCCGAATTGGTGCTGGTGAGGTAATCAAAGGGTGGGACCAAGGTATTCTTGGTGGCGATGGAATTCCTCCCATGCTTGCTGGGGGAAAGCGCACCTTGAAGATCCCTGCAGAACTTGCATATGGTGCACGGGGAGCTGGGTGTAGAGGAGGTTCATGTATTATTCCTCCATATTCCGTTCTTTTGTTTGATGTGGAATTCATTGGCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

218

Amino Acids

22.92

Weight (kDa)

8.96

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 115 - 214 3e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 538
AcsI RAATTY 3 cut(s) 284, 504, 638
AcuI CTGAAG 2 cut(s) 279, 288
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 143
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 2 cut(s) 82, 541
AjnI CCWGG 2 cut(s) 117, 244
AluBI AGCT 8 cut(s) 6, 46, 160, 266, 296, 341, 417, 578
AluI AGCT 8 cut(s) 6, 46, 160, 266, 296, 341, 417, 578
Alw21I GWGCWC 3 cut(s) 8, 240, 571
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 1 cut(s) 538
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 2 cut(s) 120, 223
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 157, 263
ApoI RAATTY 3 cut(s) 284, 504, 638
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 121, 478
AsuHPI GGTGA 2 cut(s) 126, 470
AvaII GGWCC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 3 cut(s) 8, 240, 571
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 169, 275
BccI CCATC 2 cut(s) 76, 494
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 2 cut(s) 119, 246
BfmI CTRYAG 3 cut(s) 155, 291, 549
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 2 cut(s) 158, 264
BlsI GCNGC 2 cut(s) 159, 265
Bme1390I CCNGG 2 cut(s) 119, 246
Bme18I GGWCC 1 cut(s) 478
BmgT120I GGNCC 2 cut(s) 121, 478
BmiI GGNNCC 1 cut(s) 479
BmrFI CCNGG 2 cut(s) 119, 246
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 2 cut(s) 119, 246
BseDI CCNNGG 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 61, 333
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 603
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 2 cut(s) 169, 275
BseYI CCCAGC 2 cut(s) 521, 578
BshFI GGCC 2 cut(s) 122, 225
BsiHKAI GWGCWC 3 cut(s) 8, 240, 571
BslFI GGGAC 2 cut(s) 369, 491
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 369, 491
BsnI GGCC 2 cut(s) 122, 225
Bsp1286I GDGCHC 3 cut(s) 8, 240, 571
Bsp143I GATC 1 cut(s) 543
BspANI GGCC 2 cut(s) 122, 225
BspCNI CTCAG 2 cut(s) 60, 334
BspLI GGNNCC 1 cut(s) 479
BspMAI CTGCAG 2 cut(s) 159, 553
BspPI GGATC 1 cut(s) 538
BspTI CTTAAG 1 cut(s) 112
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 119, 246
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 187
BstAFI CTTAAG 1 cut(s) 112
BstAPI GCANNNNNTGC 2 cut(s) 557, 566
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 2 cut(s) 47, 342
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 1 cut(s) 546
BstMBI GATC 1 cut(s) 543
BstMWI GCNNNNNNNGC 4 cut(s) 272, 557, 566, 575
BstNI CCWGG 2 cut(s) 119, 246
BstSCI CCNGG 2 cut(s) 117, 244
BstSFI CTRYAG 3 cut(s) 155, 291, 549
BstSLI GKGCMC 1 cut(s) 571
BstV1I GCAGC 2 cut(s) 169, 275
BstX2I RGATCY 1 cut(s) 543
BstYI RGATCY 1 cut(s) 543
BsuRI GGCC 2 cut(s) 122, 225
BtgZI GCGATG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 255, 378
Cac8I GCNNGC 1 cut(s) 519
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 2 cut(s) 121, 478
Csp6I GTAC 1 cut(s) 60
CviAII CATG 2 cut(s) 514, 597
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 47, 342
DpnI GATC 1 cut(s) 545
DpnII GATC 1 cut(s) 543
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 478
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 279, 288
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 2 cut(s) 504, 638
EcoRII CCWGG 2 cut(s) 117, 244
EcoT14I CCWWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 2 cut(s) 517, 600
FaiI YATR 9 cut(s) 163, 165, 420, 515, 562, 564, 598, 613, 655
FalI AAGNNNNNCTT 6 cut(s) 121, 153, 474, 506, 521, 553
FaqI GGGAC 2 cut(s) 369, 491
FatI CATG 2 cut(s) 513, 596
FauNDI CATATG 1 cut(s) 562
Fnu4HI GCNGC 2 cut(s) 158, 264
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 158, 264
GlaI GCGC 1 cut(s) 533
GluI GCNGC 2 cut(s) 158, 264
GsaI CCCAGC 2 cut(s) 525, 582
HaeIII GGCC 2 cut(s) 122, 225
HhaI GCGC 1 cut(s) 534
Hin1II CATG 2 cut(s) 517, 600
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 1 cut(s) 251
HindII GTYRAC 1 cut(s) 251
HphI GGTGA 2 cut(s) 126, 470
Hpy166II GTNNAC 3 cut(s) 134, 251, 569
Hpy188I TCNGA 2 cut(s) 50, 446
Hpy188III TCNNGA 3 cut(s) 99, 144, 303
Hpy8I GTNNAC 3 cut(s) 134, 251, 569
HpyAV CCTTC 4 cut(s) 67, 147, 309, 328
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 7 cut(s) 21, 33, 86, 157, 551, 560, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 557, 566, 575
HpyF3I CTNAG 2 cut(s) 47, 342
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 2 cut(s) 517, 600
HspAI GCGC 1 cut(s) 532
Kzo9I GATC 1 cut(s) 543
LmnI GCTCC 4 cut(s) 280, 301, 338, 575
Lsp1109I GCAGC 2 cut(s) 169, 275
LweI GCATC 1 cut(s) 23
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 317
MalI GATC 1 cut(s) 545
MboI GATC 1 cut(s) 543
MboII GAAGA 3 cut(s) 132, 204, 553
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 543
MhlI GDGCHC 3 cut(s) 8, 240, 571
MluCI AATT 6 cut(s) 201, 284, 386, 447, 504, 638
MnlI CCTC 7 cut(s) 337, 346, 454, 519, 581, 584, 618
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 2 cut(s) 113, 366
MspA1I CMGCKG 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 119, 246
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 2 cut(s) 119, 246
MwoI GCNNNNNNNGC 4 cut(s) 272, 557, 566, 575
NdeI CATATG 1 cut(s) 562
NdeII GATC 1 cut(s) 543
NlaIII CATG 2 cut(s) 517, 600
NlaIV GGNNCC 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 77
PkrI GCNGC 2 cut(s) 159, 265
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 117, 244
PspFI CCCAGC 2 cut(s) 521, 578
PspGI CCWGG 2 cut(s) 117, 244
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 2 cut(s) 121, 478
PsrI GAACNNNNNNTAC 4 cut(s) 43, 75, 577, 609
PstI CTGCAG 2 cut(s) 159, 553
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 543
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 113, 366
SatI GCNGC 2 cut(s) 158, 264
Sau3AI GATC 1 cut(s) 543
Sau96I GGNCC 2 cut(s) 121, 478
ScrFI CCNGG 2 cut(s) 119, 246
SduI GDGCHC 3 cut(s) 8, 240, 571
SfaNI GCATC 1 cut(s) 23
SfcI CTRYAG 3 cut(s) 155, 291, 549
SinI GGWCC 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 6 cut(s) 201, 284, 386, 447, 504, 638
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 117, 244
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 71, 408
TasI AATT 6 cut(s) 201, 284, 386, 447, 504, 638
Tru1I TTAA 2 cut(s) 113, 366
Tru9I TTAA 2 cut(s) 113, 366
TscAI CASTG 2 cut(s) 262, 385
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 2 cut(s) 157, 263
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 585, 631
TspGWI ACGGA 1 cut(s) 607
TspRI CASTG 2 cut(s) 262, 385
Vha464I CTTAAG 1 cut(s) 112
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 478
XapI RAATTY 3 cut(s) 284, 504, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.