FvH4_5g36490

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000222
Physical Location & Seq
Forward (+)
26759591 .. 26760507
917 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36490.t1

Sequence Viewer

Length: 447 bp
ATGGCGGTGAACGTGCGCCGGATGGCGGCGCGTGCGATGGTGGGAAAGGGAGTCAAGGGCAGCATAGTGTGCACGCCGAGCGTCGTGGCTGAGTCCGGGTCTAAGGTGAACACAGACTACTCGATGTCAAAGCACGCGGTGTTGGGGCTGGTGAGGTCAGCGAGCATGCAGCTAGCGGCGCGTGGAGTGAGGGTGAACTGTGTGTCGCCGGGTATGGTGGGGACGCAGACGGTGGCGGAGACTTTTAAGATTGGGGCGGAAGAGATGAAGGAGATGCTAGCGGCTGTTTATAAGGGAAGAGATGGGCCGTTGATGGAGAAACATGTGGCGGATGCGGTGGCGTTTCTAGCGTCGGAGGATTCGGCTTTCGTCACCGGCCATAATTTGGTGGTTGATGGCGGAGTTGGCACTAGCATGAATATCATATCGGCGTCGAAAGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

149

Amino Acids

15.3

Weight (kDa)

9.26

Isoelectric Point (pI)

26.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 3 - 81 1.3e-16 short chain dehydrogenase
adh_short_C2 PF13561 7 - 135 3.1e-28 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 385
AccII CGCG 3 cut(s) 31, 137, 181
AcoI YGGCCR 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 431
AdeI CACNNNGTG 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 25, 385
AflIII ACRYGT 1 cut(s) 322
AluBI AGCT 2 cut(s) 172, 440
AluI AGCT 2 cut(s) 172, 440
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 233
Alw44I GTGCAC 1 cut(s) 70
AoxI GGCC 2 cut(s) 305, 376
ApaLI GTGCAC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 60, 169
AspLEI GCGC 3 cut(s) 18, 31, 181
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 2 cut(s) 97, 210
AsuHPI GGTGA 5 cut(s) 19, 118, 163, 205, 364
AsuNHI GCTAGC 2 cut(s) 172, 277
BaeGI GKGCMC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 72, 181
BccI CCATC 5 cut(s) 16, 31, 296, 307, 389
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 2 cut(s) 97, 210
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 4 cut(s) 173, 278, 347, 411
BisI GCNGC 5 cut(s) 27, 61, 170, 177, 282
BlsI GCNGC 5 cut(s) 28, 62, 171, 178, 283
Bme1390I CCNGG 2 cut(s) 97, 210
BmgT120I GGNCC 1 cut(s) 305
BmrFI CCNGG 2 cut(s) 97, 210
BmsI GCATC 2 cut(s) 264, 322
BmtI GCTAGC 2 cut(s) 176, 281
BpuMI CCSGG 2 cut(s) 97, 210
BsaHI GRCGYC 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 385
Bse118I RCCGGY 1 cut(s) 374
BseGI GGATG 2 cut(s) 27, 337
BseLI CCNNNNNNNGG 2 cut(s) 25, 385
BseMII CTCAG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 2 cut(s) 72, 181
Bsh1236I CGCG 3 cut(s) 31, 137, 181
BshFI GGCC 2 cut(s) 307, 378
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 4 cut(s) 19, 96, 209, 375
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 25, 385
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 2 cut(s) 307, 378
Bsp1286I GDGCHC 1 cut(s) 74
BspANI GGCC 2 cut(s) 307, 378
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 3 cut(s) 31, 137, 181
BspOI GCTAGC 2 cut(s) 176, 281
BsrFI RCCGGY 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 374
BssNI GRCGYC 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 200, 232
Bst6I CTCTTC 2 cut(s) 255, 292
BstACI GRCGYC 1 cut(s) 431
BstAPI GCANNNNNTGC 1 cut(s) 69
BstC8I GCNNGC 7 cut(s) 33, 74, 135, 163, 167, 174, 279
BstDEI CTNAG 2 cut(s) 90, 102
BstF5I GGATG 2 cut(s) 27, 337
BstFNI CGCG 3 cut(s) 31, 137, 181
BstHHI GCGC 3 cut(s) 18, 31, 181
BstMAI GTCTC 1 cut(s) 233
BstMWI GCNNNNNNNGC 7 cut(s) 32, 69, 78, 178, 347, 405, 437
BstNSI RCATGY 2 cut(s) 169, 326
BstSCI CCNGG 2 cut(s) 95, 208
BstSLI GKGCMC 1 cut(s) 74
BstUI CGCG 3 cut(s) 31, 137, 181
BstV1I GCAGC 2 cut(s) 72, 181
BsuRI GGCC 2 cut(s) 307, 378
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 27, 337
Cac8I GCNNGC 7 cut(s) 33, 74, 135, 163, 167, 174, 279
CfoI GCGC 3 cut(s) 18, 31, 181
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 4 cut(s) 70, 232, 339, 420
CviAII CATG 3 cut(s) 166, 323, 415
CviJI RGCY 8 cut(s) 89, 148, 172, 284, 307, 365, 378, 440
CviKI_1 RGCY 8 cut(s) 89, 148, 172, 284, 307, 365, 378, 440
DdeI CTNAG 2 cut(s) 90, 102
DraIII CACNNNGTG 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 255, 292
EarI CTCTTC 2 cut(s) 255, 292
EciI GGCGGA 4 cut(s) 251, 272, 344, 414
FaeI CATG 3 cut(s) 169, 326, 418
FaiI YATR 8 cut(s) 65, 167, 215, 291, 324, 381, 416, 425
FaqI GGGAC 1 cut(s) 235
FatI CATG 3 cut(s) 165, 322, 414
Fnu4HI GCNGC 5 cut(s) 27, 61, 170, 177, 282
FokI GGATG 2 cut(s) 34, 344
Fsp4HI GCNGC 5 cut(s) 27, 61, 170, 177, 282
FspBI CTAG 4 cut(s) 173, 278, 347, 411
GlaI GCGC 3 cut(s) 17, 30, 180
GluI GCNGC 5 cut(s) 27, 61, 170, 177, 282
HaeIII GGCC 2 cut(s) 307, 378
HapII CCGG 4 cut(s) 19, 96, 209, 375
HgaI GACGC 4 cut(s) 70, 232, 339, 420
HhaI GCGC 3 cut(s) 18, 31, 181
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 3 cut(s) 169, 326, 418
Hin6I GCGC 3 cut(s) 16, 29, 179
HinP1I GCGC 3 cut(s) 16, 29, 179
HinfI GANTC 3 cut(s) 51, 92, 359
HpaII CCGG 4 cut(s) 19, 96, 209, 375
HphI GGTGA 5 cut(s) 19, 118, 163, 205, 364
Hpy166II GTNNAC 4 cut(s) 10, 72, 109, 196
Hpy188I TCNGA 1 cut(s) 355
Hpy8I GTNNAC 4 cut(s) 10, 72, 109, 196
Hpy99I CGWCG 3 cut(s) 86, 355, 436
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 200, 232
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 72, 169
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 69, 78, 178, 347, 405, 437
HpyF3I CTNAG 2 cut(s) 90, 102
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 3 cut(s) 169, 326, 418
HspAI GCGC 3 cut(s) 16, 29, 179
LpnPI CCDG 5 cut(s) 32, 109, 134, 222, 388
Lsp1109I GCAGC 2 cut(s) 72, 181
LweI GCATC 2 cut(s) 264, 322
MaeI CTAG 4 cut(s) 173, 278, 347, 411
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 370
MboII GAAGA 2 cut(s) 272, 309
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 2 cut(s) 382, 442
MlyI GAGTC 2 cut(s) 60, 101
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 3 cut(s) 147, 183, 349
MseI TTAA 2 cut(s) 246, 445
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 4 cut(s) 19, 96, 209, 375
MspR9I CCNGG 2 cut(s) 97, 210
MvnI CGCG 3 cut(s) 31, 137, 181
MwoI GCNNNNNNNGC 7 cut(s) 32, 69, 78, 178, 347, 405, 437
NciI CCSGG 2 cut(s) 97, 210
NheI GCTAGC 2 cut(s) 172, 277
NlaIII CATG 3 cut(s) 169, 326, 418
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 2 cut(s) 169, 326
PaeI GCATGC 1 cut(s) 169
PciI ACATGT 1 cut(s) 322
PfeI GAWTC 1 cut(s) 359
PflMI CCANNNNNTGG 1 cut(s) 385
PkrI GCNGC 5 cut(s) 28, 62, 171, 178, 283
PleI GAGTC 2 cut(s) 59, 100
PpsI GAGTC 2 cut(s) 59, 100
PscI ACATGT 1 cut(s) 322
PsiI TTATAA 1 cut(s) 291
PspPI GGNCC 1 cut(s) 305
PsrI GAACNNNNNNTAC 2 cut(s) 101, 133
RseI CAYNNNNRTG 1 cut(s) 413
SaqAI TTAA 2 cut(s) 246, 445
SatI GCNGC 5 cut(s) 27, 61, 170, 177, 282
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 2 cut(s) 60, 101
ScrFI CCNGG 2 cut(s) 97, 210
SduI GDGCHC 1 cut(s) 74
SetI ASST 5 cut(s) 15, 108, 158, 174, 442
SfaNI GCATC 2 cut(s) 264, 322
SmiMI CAYNNNNRTG 1 cut(s) 413
SphI GCATGC 1 cut(s) 169
Sse9I AATT 2 cut(s) 382, 442
SspMI CTAG 4 cut(s) 173, 278, 347, 411
StyD4I CCNGG 2 cut(s) 95, 208
TaaI ACNGT 2 cut(s) 200, 232
TaiI ACGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 122, 434
TasI AATT 2 cut(s) 382, 442
TauI GCSGC 3 cut(s) 29, 179, 284
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 2 cut(s) 246, 445
Tru9I TTAA 2 cut(s) 246, 445
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 2 cut(s) 60, 169
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 281, 431
Van91I CCANNNNNTGG 1 cut(s) 385
VneI GTGCAC 1 cut(s) 70
XceI RCATGY 2 cut(s) 169, 326
XspI CTAG 4 cut(s) 173, 278, 347, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.