Rh7BG439400

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000222
Physical Location & Seq
Forward (+)
50602234 .. 50612532
10299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG439400.1

Sequence Viewer

Length: 522 bp
ATGGAGGTGAACGCCCGGGGGATGGCGGCGTGTGTGAAGCACGCGGCGCGTGCAATGGTGGGGAAGGGAGTCAGAGGCATCATAGTGTGCACGGCTAGCATAGTGGCGGAGTGCGGGACGGTGAGCGGGCCAGACTACACGATGTCGAAGCACGCGGTGCTGGGGCTGGTGCGGTCAGCAACCGTGCAGCTGGCGGCGCGTAGGGTGCGCGTGAACTGCGTGTCGCCGGGTTTGGTGGGGACGCCGCTGGTGAGCGAGACTTTTAAACTTGGGGAGGAAGAGCTGAAGGAGATGATGACAGCGGTTTATTTGGAAAGCAGCGATGGGCCGCTGACGGAGAAACATGTGGCGAATACGGTGGTGTTTTTGGTGTCGGAGGACTCGGTGTTCGTCACCGGCCATAATTTGGTGGTTGATGGCGGATTTGGCACCAAGTCCTTATCATCAACAATGGATAAAGAAGCAATTAACATGCCTCACAATTGTAACGGATGTGGTGAAAATAAAGGATATACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

173

Amino Acids

18.19

Weight (kDa)

6.51

Isoelectric Point (pI)

31.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 142 2.1e-31 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 1 - 87 2.2e-17 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 406
AccBSI CCGCTC 1 cut(s) 126
AccII CGCG 5 cut(s) 44, 49, 155, 199, 210
AcoI YGGCCR 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 242
AdeI CACNNNGTG 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 22, 406
AflIII ACRYGT 1 cut(s) 343
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 2 cut(s) 190, 283
AluI AGCT 2 cut(s) 190, 283
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 15
AoxI GGCC 3 cut(s) 128, 326, 397
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 187, 318
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspLEI GCGC 3 cut(s) 49, 199, 210
AspS9I GGNCC 2 cut(s) 128, 326
AsuC2I CCSGG 3 cut(s) 16, 17, 228
AsuHPI GGTGA 5 cut(s) 19, 133, 262, 385, 509
AsuNHI GCTAGC 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 2 cut(s) 199, 330
BccI CCATC 3 cut(s) 16, 317, 410
BceAI ACGGC 1 cut(s) 108
BcnI CCSGG 3 cut(s) 16, 17, 228
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 96
BisI GCNGC 7 cut(s) 27, 45, 188, 195, 245, 319, 329
BlsI GCNGC 7 cut(s) 28, 46, 189, 196, 246, 320, 330
Bme1390I CCNGG 3 cut(s) 16, 17, 228
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 2 cut(s) 128, 326
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 3 cut(s) 16, 17, 228
BmsI GCATC 1 cut(s) 87
BmtI GCTAGC 1 cut(s) 99
BpuMI CCSGG 3 cut(s) 16, 17, 228
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 15, 16
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 406
Bse118I RCCGGY 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 15, 16
BseGI GGATG 2 cut(s) 27, 497
BseLI CCNNNNNNNGG 2 cut(s) 22, 406
BseMI GCAATG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 2 cut(s) 199, 330
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 206
Bsh1236I CGCG 5 cut(s) 44, 49, 155, 199, 210
BshFI GGCC 3 cut(s) 130, 328, 399
BshNI GGYRCC 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 3 cut(s) 16, 227, 396
BslFI GGGAC 2 cut(s) 130, 253
BslI CCNNNNNNNGG 2 cut(s) 22, 406
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 2 cut(s) 130, 253
BsnI GGCC 3 cut(s) 130, 328, 399
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 92
BspANI GGCC 3 cut(s) 130, 328, 399
BspFNI CGCG 5 cut(s) 44, 49, 155, 199, 210
BspLI GGNNCC 1 cut(s) 430
BspOI GCTAGC 1 cut(s) 99
BspQI GCTCTTC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 15, 16
BssNI GRCGYC 1 cut(s) 242
Bst4CI ACNGT 3 cut(s) 121, 184, 358
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 157
BstC8I GCNNGC 6 cut(s) 42, 51, 97, 128, 153, 192
BstF5I GGATG 2 cut(s) 27, 497
BstFNI CGCG 5 cut(s) 44, 49, 155, 199, 210
BstHHI GCGC 3 cut(s) 49, 199, 210
BstMAI GTCTC 1 cut(s) 251
BstMWI GCNNNNNNNGC 8 cut(s) 46, 50, 96, 157, 196, 205, 216, 426
BstNSI RCATGY 2 cut(s) 347, 475
BstSCI CCNGG 3 cut(s) 14, 15, 226
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 5 cut(s) 44, 49, 155, 199, 210
BstV1I GCAGC 2 cut(s) 199, 330
BsuRI GGCC 3 cut(s) 130, 328, 399
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 2 cut(s) 27, 497
Cac8I GCNNGC 6 cut(s) 42, 51, 97, 128, 153, 192
CfoI GCGC 3 cut(s) 49, 199, 210
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 128, 326
Cfr9I CCCGGG 1 cut(s) 15
CseI GACGC 1 cut(s) 250
CviAII CATG 2 cut(s) 344, 472
CviJI RGCY 7 cut(s) 95, 130, 166, 190, 283, 328, 399
CviKI_1 RGCY 7 cut(s) 95, 130, 166, 190, 283, 328, 399
DraI TTTAAA 1 cut(s) 265
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 2 cut(s) 122, 435
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 15
FaeI CATG 2 cut(s) 347, 475
FaiI YATR 6 cut(s) 83, 101, 345, 402, 473, 513
FaqI GGGAC 2 cut(s) 130, 253
FatI CATG 2 cut(s) 343, 471
FauI CCCGC 2 cut(s) 107, 119
Fnu4HI GCNGC 7 cut(s) 27, 45, 188, 195, 245, 319, 329
FokI GGATG 2 cut(s) 34, 504
Fsp4HI GCNGC 7 cut(s) 27, 45, 188, 195, 245, 319, 329
FspBI CTAG 1 cut(s) 96
GlaI GCGC 3 cut(s) 48, 198, 209
GluI GCNGC 7 cut(s) 27, 45, 188, 195, 245, 319, 329
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 3 cut(s) 130, 328, 399
HapII CCGG 3 cut(s) 16, 227, 396
HgaI GACGC 1 cut(s) 250
HhaI GCGC 3 cut(s) 49, 199, 210
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 2 cut(s) 347, 475
Hin6I GCGC 3 cut(s) 47, 197, 208
HinP1I GCGC 3 cut(s) 47, 197, 208
HinfI GANTC 2 cut(s) 69, 380
HpaII CCGG 3 cut(s) 16, 227, 396
HphI GGTGA 5 cut(s) 19, 133, 262, 385, 509
Hpy166II GTNNAC 3 cut(s) 10, 90, 214
Hpy188I TCNGA 2 cut(s) 74, 376
Hpy8I GTNNAC 3 cut(s) 10, 90, 214
HpyAV CCTTC 2 cut(s) 58, 280
HpyCH4III ACNGT 3 cut(s) 121, 184, 358
HpyCH4V TGCA 3 cut(s) 53, 90, 187
HpyF10VI GCNNNNNNNGC 8 cut(s) 46, 50, 96, 157, 196, 205, 216, 426
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 347, 475
HspAI GCGC 3 cut(s) 47, 197, 208
LguI GCTCTTC 1 cut(s) 273
LpnPI CCDG 8 cut(s) 29, 144, 146, 152, 176, 233, 240, 409
Lsp1109I GCAGC 2 cut(s) 199, 330
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 391, 485
MbiI CCGCTC 1 cut(s) 126
MboII GAAGA 1 cut(s) 290
MfeI CAATTG 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 3 cut(s) 403, 465, 481
MlyI GAGTC 2 cut(s) 78, 374
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 4 cut(s) 68, 268, 370, 486
MseI TTAA 2 cut(s) 264, 468
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 4 cut(s) 190, 247, 302, 331
MspI CCGG 3 cut(s) 16, 227, 396
MspR9I CCNGG 3 cut(s) 16, 17, 228
MunI CAATTG 1 cut(s) 481
MvnI CGCG 5 cut(s) 44, 49, 155, 199, 210
MwoI GCNNNNNNNGC 8 cut(s) 46, 50, 96, 157, 196, 205, 216, 426
NciI CCSGG 3 cut(s) 16, 17, 228
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 347, 475
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 2 cut(s) 347, 475
PciI ACATGT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 7 cut(s) 28, 46, 189, 196, 246, 320, 330
PleI GAGTC 2 cut(s) 77, 374
PpsI GAGTC 2 cut(s) 77, 374
PscI ACATGT 1 cut(s) 343
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 2 cut(s) 128, 326
PvuII CAGCTG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 264, 468
SatI GCNGC 7 cut(s) 27, 45, 188, 195, 245, 319, 329
Sau96I GGNCC 2 cut(s) 128, 326
SchI GAGTC 2 cut(s) 78, 374
ScrFI CCNGG 3 cut(s) 16, 17, 228
SduI GDGCHC 1 cut(s) 92
SetI ASST 3 cut(s) 9, 192, 285
SfaNI GCATC 1 cut(s) 87
SmaI CCCGGG 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 3 cut(s) 403, 465, 481
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 3 cut(s) 14, 15, 226
TaaI ACNGT 3 cut(s) 121, 184, 358
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 403, 465, 481
TauI GCSGC 5 cut(s) 29, 47, 197, 247, 331
Tru1I TTAA 2 cut(s) 264, 468
Tru9I TTAA 2 cut(s) 264, 468
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 187, 318
Tsp45I GTSAC 1 cut(s) 391
TspGWI ACGGA 2 cut(s) 350, 504
TspMI CCCGGG 1 cut(s) 15
Van91I CCANNNNNTGG 1 cut(s) 406
VneI GTGCAC 1 cut(s) 88
XceI RCATGY 2 cut(s) 347, 475
XmaI CCCGGG 1 cut(s) 15
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.