FvH4_5g36520

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000222
Physical Location & Seq
Forward (+)
26794258 .. 26794800
543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36520.t1

Sequence Viewer

Length: 543 bp
ATGATTTGCAATGCAGGGATAATCGCCGGGTTGATGCAGACTGTGCTGGAGCTCGACCTGTCCGCGTACGACAGGGTGATGGCGGTGAACGTGCGCAGGATGGCGGCGTGTGTGAAGCACGCGGCGCATGCGATGGTGGGAAAGGGATTCAAGGGCAGCATAGTGTGCACGGCGAGCGTCGTGGCTAAGTCCGGGTCTAAGGTGAACACAGACTACTCGATGTCAAAGCACGCGGTGTTGGGGCAGGTGAGGTCAGCGAGCATGCAGCTAGCGGCGCGTGGAGTGAGGGTGAACTGTGTGTCGCCGGGTATGGTGGGGACGCAGATGGTGGCGGAGACTTTTAAGATTGGGGCGGAAGAGATGAAGGAGATGCTGGCGGCGGTTTATAAGGGAAGAGATGGGCCGTTGATGGAGAAACATGTGGCGGATGCGGTGGCGTTTCTAGCGTCGGAGGATTCGGCTTTCGTCACTGGCCATAATTTGGTGGTTGATGGCGGAGTTGGCACTGGCATGAATATCATATCGGCGTCGAAAGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

181

Amino Acids

18.72

Weight (kDa)

8.95

Isoelectric Point (pI)

21.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 167 4.5e-36 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 1 - 113 1.2e-23 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AarI CACCTGC 1 cut(s) 235
Acc16I TGCGCA 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 481
AccII CGCG 4 cut(s) 65, 122, 233, 277
AcoI YGGCCR 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 527
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 3 cut(s) 52, 268, 536
AluI AGCT 3 cut(s) 52, 268, 536
Alw21I GWGCWC 2 cut(s) 54, 170
Alw26I GTCTC 1 cut(s) 329
Alw44I GTGCAC 1 cut(s) 166
AoxI GGCC 2 cut(s) 401, 472
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 156, 265
AspLEI GCGC 3 cut(s) 96, 127, 277
AspS9I GGNCC 1 cut(s) 401
AsuC2I CCSGG 3 cut(s) 28, 193, 306
AsuHPI GGTGA 5 cut(s) 88, 97, 214, 259, 301
AsuNHI GCTAGC 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 474
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 2 cut(s) 54, 170
BbvI GCAGC 2 cut(s) 168, 277
BccI CCATC 7 cut(s) 73, 94, 127, 319, 392, 403, 485
BceAI ACGGC 2 cut(s) 186, 388
BcnI CCSGG 3 cut(s) 28, 193, 306
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 2 cut(s) 269, 443
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 6 cut(s) 105, 123, 157, 266, 273, 378
BlsI GCNGC 6 cut(s) 106, 124, 158, 267, 274, 379
Bme1390I CCNGG 3 cut(s) 28, 193, 306
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 3 cut(s) 28, 193, 306
BmsI GCATC 3 cut(s) 24, 360, 418
BmtI GCTAGC 1 cut(s) 272
BpmI CTGGAG 1 cut(s) 68
BpuMI CCSGG 3 cut(s) 28, 193, 306
BsaHI GRCGYC 1 cut(s) 527
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 475, 511
Bse3DI GCAATG 1 cut(s) 16
BseGI GGATG 2 cut(s) 105, 433
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 2 cut(s) 475, 511
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 2 cut(s) 168, 277
Bsh1236I CGCG 4 cut(s) 65, 122, 233, 277
BshFI GGCC 2 cut(s) 403, 474
BsiHKAI GWGCWC 2 cut(s) 54, 170
BsiSI CCGG 3 cut(s) 27, 192, 305
BsiWI CGTACG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 2 cut(s) 403, 474
Bsp1286I GDGCHC 2 cut(s) 54, 170
BspANI GGCC 2 cut(s) 403, 474
BspFNI CGCG 4 cut(s) 65, 122, 233, 277
BspMI ACCTGC 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 2 cut(s) 475, 511
BssNI GRCGYC 1 cut(s) 527
Bst4CI ACNGT 2 cut(s) 43, 296
Bst6I CTCTTC 2 cut(s) 351, 388
BstACI GRCGYC 1 cut(s) 527
BstAPI GCANNNNNTGC 2 cut(s) 43, 165
BstC8I GCNNGC 8 cut(s) 120, 129, 175, 231, 259, 263, 270, 375
BstDEI CTNAG 2 cut(s) 186, 198
BstF5I GGATG 2 cut(s) 105, 433
BstFNI CGCG 4 cut(s) 65, 122, 233, 277
BstHHI GCGC 3 cut(s) 96, 127, 277
BstMAI GTCTC 1 cut(s) 329
BstMWI GCNNNNNNNGC 9 cut(s) 43, 124, 128, 165, 174, 274, 443, 501, 533
BstNSI RCATGY 3 cut(s) 131, 265, 422
BstSCI CCNGG 3 cut(s) 26, 191, 304
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 4 cut(s) 65, 122, 233, 277
BstV1I GCAGC 2 cut(s) 168, 277
BsuRI GGCC 2 cut(s) 403, 474
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 2 cut(s) 105, 433
BtsIMutI CAGTG 2 cut(s) 468, 504
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 8 cut(s) 120, 129, 175, 231, 259, 263, 270, 375
CfoI GCGC 3 cut(s) 96, 127, 277
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 4 cut(s) 166, 328, 435, 516
Csp6I GTAC 1 cut(s) 67
CviAII CATG 4 cut(s) 128, 262, 419, 511
CviJI RGCY 7 cut(s) 52, 185, 268, 403, 461, 474, 536
CviKI_1 RGCY 7 cut(s) 52, 185, 268, 403, 461, 474, 536
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 186, 198
DraIII CACNNNGTG 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 351, 388
EarI CTCTTC 2 cut(s) 351, 388
EciI GGCGGA 4 cut(s) 347, 368, 440, 510
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 4 cut(s) 131, 265, 422, 514
FaiI YATR 9 cut(s) 129, 161, 263, 311, 387, 420, 477, 512, 521
FaqI GGGAC 1 cut(s) 331
FatI CATG 4 cut(s) 127, 261, 418, 510
Fnu4HI GCNGC 6 cut(s) 105, 123, 157, 266, 273, 378
FokI GGATG 2 cut(s) 112, 440
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 6 cut(s) 105, 123, 157, 266, 273, 378
FspBI CTAG 2 cut(s) 269, 443
FspI TGCGCA 1 cut(s) 95
GlaI GCGC 3 cut(s) 95, 126, 276
GluI GCNGC 6 cut(s) 105, 123, 157, 266, 273, 378
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 2 cut(s) 403, 474
HapII CCGG 3 cut(s) 27, 192, 305
HgaI GACGC 4 cut(s) 166, 328, 435, 516
HhaI GCGC 3 cut(s) 96, 127, 277
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 4 cut(s) 131, 265, 422, 514
Hin6I GCGC 3 cut(s) 94, 125, 275
HinP1I GCGC 3 cut(s) 94, 125, 275
HinfI GANTC 2 cut(s) 147, 455
HpaII CCGG 3 cut(s) 27, 192, 305
HphI GGTGA 5 cut(s) 88, 97, 214, 259, 301
Hpy166II GTNNAC 4 cut(s) 88, 168, 205, 292
Hpy188I TCNGA 1 cut(s) 451
Hpy8I GTNNAC 4 cut(s) 88, 168, 205, 292
Hpy99I CGWCG 3 cut(s) 182, 451, 532
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 43, 296
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 5 cut(s) 9, 14, 37, 168, 265
HpyF10VI GCNNNNNNNGC 9 cut(s) 43, 124, 128, 165, 174, 274, 443, 501, 533
HpyF3I CTNAG 2 cut(s) 186, 198
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 4 cut(s) 131, 265, 422, 514
HspAI GCGC 3 cut(s) 94, 125, 275
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 2 cut(s) 168, 277
LweI GCATC 3 cut(s) 24, 360, 418
MaeI CTAG 2 cut(s) 269, 443
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 466
MboII GAAGA 2 cut(s) 368, 405
MhlI GDGCHC 2 cut(s) 54, 170
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 2 cut(s) 478, 538
MluNI TGGCCA 1 cut(s) 474
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 3 cut(s) 243, 279, 445
Mox20I TGGCCA 1 cut(s) 474
MscI TGGCCA 1 cut(s) 474
MseI TTAA 2 cut(s) 342, 541
MslI CAYNNNNRTG 1 cut(s) 509
Msp20I TGGCCA 1 cut(s) 474
MspI CCGG 3 cut(s) 27, 192, 305
MspR9I CCNGG 3 cut(s) 28, 193, 306
MvnI CGCG 4 cut(s) 65, 122, 233, 277
MwoI GCNNNNNNNGC 9 cut(s) 43, 124, 128, 165, 174, 274, 443, 501, 533
NciI CCSGG 3 cut(s) 28, 193, 306
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 4 cut(s) 131, 265, 422, 514
NmuCI GTSAC 1 cut(s) 466
NsbI TGCGCA 1 cut(s) 95
NspI RCATGY 3 cut(s) 131, 265, 422
PaeI GCATGC 2 cut(s) 131, 265
PaqCI CACCTGC 1 cut(s) 235
PciI ACATGT 1 cut(s) 418
PfeI GAWTC 2 cut(s) 147, 455
Pfl23II CGTACG 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 6 cut(s) 106, 124, 158, 267, 274, 379
PscI ACATGT 1 cut(s) 418
PsiI TTATAA 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 54
PspLI CGTACG 1 cut(s) 66
PspPI GGNCC 1 cut(s) 401
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 342, 541
SatI GCNGC 6 cut(s) 105, 123, 157, 266, 273, 378
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 3 cut(s) 28, 193, 306
SduI GDGCHC 2 cut(s) 54, 170
SetI ASST 8 cut(s) 54, 60, 93, 204, 249, 254, 270, 538
SfaNI GCATC 3 cut(s) 24, 360, 418
SmiMI CAYNNNNRTG 1 cut(s) 509
SphI GCATGC 2 cut(s) 131, 265
Sse9I AATT 2 cut(s) 478, 538
SspMI CTAG 2 cut(s) 269, 443
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 26, 191, 304
TaaI ACNGT 2 cut(s) 43, 296
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 54, 218, 530
TasI AATT 2 cut(s) 478, 538
TauI GCSGC 4 cut(s) 107, 125, 275, 380
TfiI GAWTC 2 cut(s) 147, 455
Tru1I TTAA 2 cut(s) 342, 541
Tru9I TTAA 2 cut(s) 342, 541
TscAI CASTG 2 cut(s) 475, 511
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 2 cut(s) 156, 265
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 2 cut(s) 377, 527
TspRI CASTG 2 cut(s) 475, 511
Van91I CCANNNNNTGG 1 cut(s) 481
VneI GTGCAC 1 cut(s) 166
XceI RCATGY 3 cut(s) 131, 265, 422
XspI CTAG 2 cut(s) 269, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.