FvH4_5g15550

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000222
Physical Location & Seq
Reverse (-)
8769530 .. 8770835
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15550.t1

Sequence Viewer

Length: 792 bp
ATGACAGAACTCAAGAAGAAGCTTCACGACAAGGTGGCAATAGTCACCGGTGGCGCCAGCGGCATTGGCGAAGCCACCGCACGAAAATTTGCGTTGCATGGTGCCCGTGCGGTAGTCATCGCCGACGTCCAAGACCAGAAAGGCCAGGACGTCGCCGCTTCGATCGGTCCTCACTGCAACTTCATCCACTGCGACGTCACAGACGAGGAACAAGTGAAGAGCCTGGTCGATTCAACGGTCCAGATGCACGGTCGCCTGGACATCATGTTCAGCAACGCCGGAATATTCTGCTCGTCGATGCAGACCGTGCTGGAGTTTGAGTTATCAGAGTACGACAAGCTCATGGTGGTCAACGTACGTGGGATGGCGGCGTGTGTGAAGCACGCCGCGCGAGCCATGGTGGAAGGTGGAGTTAGGGGGAGCGTTATATGCACGGCGAGCGTTGTGGCGACTATTGGATTAAAGTGGTTCACAGACTACACCATGTCAAAACACACCATTTTGGGGCTGATGAGGTCGGCGAGTATCCAGCTCGGCGCGTACGGGATACGCGTCAACTGCGTGTCGCCGGGAACTGTTCAGACGCCAATCACAGACTCCTTGGTTAACTTCAAAGATGTAGAGCAGATGACCAAGTTTACGGCGTCGTTAGGGATAGATGGAGGGAAAGAGTTTATGTCGCCGGAGCATGTGGCAAACGCAGTCGTGTTTCTGGCTTCTGAGGACTCTCAGTTTATATCCGGTCACAATCTGGTCGTAGAAGGTGTTGTAGACGGTGGCCAGAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

264

Amino Acids

28.04

Weight (kDa)

5.97

Isoelectric Point (pI)

25.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 202 2.7e-46 short chain dehydrogenase
KR PF08659 14 - 171 9.2e-10 KR domain
adh_short_C2 PF13561 19 - 255 2.2e-57 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 129, 153, 198
AccB1I GGYRCC 2 cut(s) 53, 101
AccI GTMKAC 1 cut(s) 771
AccII CGCG 4 cut(s) 389, 391, 539, 552
AciI CCGC 6 cut(s) 60, 78, 110, 156, 368, 387
AcoI YGGCCR 1 cut(s) 778
AcsI RAATTY 1 cut(s) 86
AcyI GRCGYC 6 cut(s) 54, 126, 150, 195, 584, 644
AfaI GTAC 3 cut(s) 332, 357, 542
AfiI CCNNNNNNNGG 1 cut(s) 504
AflIII ACRYGT 1 cut(s) 550
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 2 cut(s) 234, 613
AjnI CCWGG 3 cut(s) 144, 222, 255
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 22, 340, 532
AluI AGCT 3 cut(s) 22, 340, 532
AoxI GGCC 2 cut(s) 142, 778
ApoI RAATTY 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 47
AspLEI GCGC 3 cut(s) 56, 391, 539
AspS9I GGNCC 2 cut(s) 167, 238
AsuC2I CCSGG 1 cut(s) 570
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 2 cut(s) 167, 238
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 780
BanI GGYRCC 2 cut(s) 53, 101
BccI CCATC 2 cut(s) 358, 653
BceAI ACGGC 2 cut(s) 450, 657
BciT130I CCWGG 3 cut(s) 146, 224, 257
BciVI GTATCC 2 cut(s) 536, 540
BcnI CCSGG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 57
BfuI GTATCC 2 cut(s) 536, 540
BisI GCNGC 4 cut(s) 61, 156, 369, 387
BlsI GCNGC 4 cut(s) 62, 157, 370, 388
Bme1390I CCNGG 4 cut(s) 146, 224, 257, 570
Bme18I GGWCC 2 cut(s) 167, 238
BmgT120I GGNCC 2 cut(s) 167, 238
BmiI GGNNCC 2 cut(s) 55, 103
BmrFI CCNGG 4 cut(s) 146, 224, 257, 570
BmsI GCATC 2 cut(s) 234, 288
BpmI CTGGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 570
BsaAI YACGTR 1 cut(s) 359
BsaHI GRCGYC 6 cut(s) 54, 126, 150, 195, 584, 644
BsaJI CCNNGG 2 cut(s) 396, 600
BsaWI WCCGGW 2 cut(s) 47, 740
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse118I RCCGGY 1 cut(s) 47
BseBI CCWGG 3 cut(s) 146, 224, 257
BseDI CCNNGG 2 cut(s) 396, 600
BseGI GGATG 2 cut(s) 183, 369
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMII CTCAG 2 cut(s) 711, 743
BseSI GKGCMC 1 cut(s) 106
Bsh1236I CGCG 4 cut(s) 389, 391, 539, 552
Bsh1285I CGRYCG 2 cut(s) 165, 253
BshFI GGCC 2 cut(s) 144, 780
BshNI GGYRCC 2 cut(s) 53, 101
BshTI ACCGGT 1 cut(s) 47
BsiEI CGRYCG 2 cut(s) 165, 253
BsiSI CCGG 5 cut(s) 48, 279, 569, 683, 741
BsiWI CGTACG 2 cut(s) 355, 540
BslI CCNNNNNNNGG 1 cut(s) 504
BsnI GGCC 2 cut(s) 144, 780
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 396
BspACI CCGC 6 cut(s) 60, 78, 110, 156, 368, 387
BspANI GGCC 2 cut(s) 144, 780
BspCNI CTCAG 2 cut(s) 712, 742
BspFNI CGCG 4 cut(s) 389, 391, 539, 552
BspLI GGNNCC 2 cut(s) 55, 103
BspQI GCTCTTC 1 cut(s) 212
BspT107I GGYRCC 2 cut(s) 53, 101
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssECI CCNNGG 2 cut(s) 396, 600
BssMI GATC 1 cut(s) 162
BssNI GRCGYC 6 cut(s) 54, 126, 150, 195, 584, 644
BssT1I CCWWGG 2 cut(s) 396, 600
Bst2UI CCWGG 3 cut(s) 146, 224, 257
Bst4CI ACNGT 5 cut(s) 238, 251, 307, 577, 776
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 6 cut(s) 54, 126, 150, 195, 584, 644
BstAPI GCANNNNNTGC 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 4 cut(s) 58, 384, 393, 439
BstDEI CTNAG 2 cut(s) 720, 729
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 183, 369
BstFNI CGCG 4 cut(s) 389, 391, 539, 552
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 3 cut(s) 56, 391, 539
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstMCI CGRYCG 2 cut(s) 165, 253
BstMWI GCNNNNNNNGC 8 cut(s) 60, 66, 307, 388, 392, 429, 438, 558
BstNI CCWGG 3 cut(s) 146, 224, 257
BstNSI RCATGY 1 cut(s) 692
BstSCI CCNGG 4 cut(s) 144, 222, 255, 568
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 4 cut(s) 389, 391, 539, 552
BsuI GTATCC 2 cut(s) 536, 540
BsuRI GGCC 2 cut(s) 144, 780
BtgI CCRYGG 1 cut(s) 396
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 183, 369
BtsI GCAGTG 2 cut(s) 172, 187
BtsIMutI CAGTG 2 cut(s) 172, 187
Cac8I GCNNGC 4 cut(s) 58, 384, 393, 439
CfoI GCGC 3 cut(s) 56, 391, 539
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 167, 238
CseI GACGC 3 cut(s) 541, 592, 633
Csp6I GTAC 3 cut(s) 331, 356, 541
CspAI ACCGGT 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 6 cut(s) 98, 265, 343, 397, 484, 689
CviQI GTAC 3 cut(s) 331, 356, 541
DdeI CTNAG 2 cut(s) 720, 729
DinI GGCGCC 1 cut(s) 55
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 778
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 396, 600
Eco47I GGWCC 2 cut(s) 167, 238
EcoRII CCWGG 3 cut(s) 144, 222, 255
EcoT14I CCWWGG 2 cut(s) 396, 600
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 396, 600
FaeI CATG 6 cut(s) 101, 268, 346, 400, 487, 692
FatI CATG 6 cut(s) 97, 264, 342, 396, 483, 688
FblI GTMKAC 1 cut(s) 771
Fnu4HI GCNGC 4 cut(s) 61, 156, 369, 387
FokI GGATG 2 cut(s) 170, 376
Fsp4HI GCNGC 4 cut(s) 61, 156, 369, 387
GlaI GCGC 3 cut(s) 55, 390, 538
GluI GCNGC 4 cut(s) 61, 156, 369, 387
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 2 cut(s) 144, 780
HapII CCGG 5 cut(s) 48, 279, 569, 683, 741
HgaI GACGC 3 cut(s) 541, 592, 633
HhaI GCGC 3 cut(s) 56, 391, 539
Hin1I GRCGYC 6 cut(s) 54, 126, 150, 195, 584, 644
Hin1II CATG 6 cut(s) 101, 268, 346, 400, 487, 692
Hin6I GCGC 3 cut(s) 54, 389, 537
HinP1I GCGC 3 cut(s) 54, 389, 537
HincII GTYRAC 3 cut(s) 352, 556, 607
HindII GTYRAC 3 cut(s) 352, 556, 607
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 3 cut(s) 230, 596, 725
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 5 cut(s) 48, 279, 569, 683, 741
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 6 cut(s) 352, 471, 556, 607, 639, 772
Hpy188I TCNGA 3 cut(s) 328, 582, 721
Hpy188III TCNNGA 3 cut(s) 13, 26, 241
Hpy8I GTNNAC 6 cut(s) 352, 471, 556, 607, 639, 772
Hpy99I CGWCG 5 cut(s) 128, 155, 197, 298, 649
HpyAV CCTTC 2 cut(s) 398, 755
HpyCH4III ACNGT 5 cut(s) 238, 251, 307, 577, 776
HpyCH4IV ACGT 5 cut(s) 126, 150, 195, 354, 358
HpyCH4V TGCA 5 cut(s) 97, 177, 247, 301, 432
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 66, 307, 388, 392, 429, 438, 558
HpyF3I CTNAG 2 cut(s) 720, 729
HpySE526I ACGT 5 cut(s) 126, 150, 195, 354, 358
Hsp92I GRCGYC 6 cut(s) 54, 126, 150, 195, 584, 644
Hsp92II CATG 6 cut(s) 101, 268, 346, 400, 487, 692
HspAI GCGC 3 cut(s) 54, 389, 537
KasI GGCGCC 1 cut(s) 53
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 1 cut(s) 162
LguI GCTCTTC 1 cut(s) 212
LmnI GCTCC 2 cut(s) 420, 685
LweI GCATC 2 cut(s) 234, 288
MaeII ACGT 5 cut(s) 126, 150, 195, 354, 358
MaeIII GTNAC 3 cut(s) 43, 196, 743
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 28, 229
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 780
MluCI AATT 1 cut(s) 86
MluI ACGCGT 1 cut(s) 550
MluNI TGGCCA 1 cut(s) 780
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 2 cut(s) 590, 719
MnlI CCTC 5 cut(s) 180, 199, 507, 656, 715
Mox20I TGGCCA 1 cut(s) 780
MscI TGGCCA 1 cut(s) 780
MseI TTAA 2 cut(s) 461, 606
Msp20I TGGCCA 1 cut(s) 780
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 5 cut(s) 48, 279, 569, 683, 741
MspR9I CCNGG 4 cut(s) 146, 224, 257, 570
MvaI CCWGG 3 cut(s) 146, 224, 257
MvnI CGCG 4 cut(s) 389, 391, 539, 552
MwoI GCNNNNNNNGC 8 cut(s) 60, 66, 307, 388, 392, 429, 438, 558
NarI GGCGCC 1 cut(s) 54
NciI CCSGG 1 cut(s) 570
NcoI CCATGG 1 cut(s) 396
NdeII GATC 1 cut(s) 162
NlaIII CATG 6 cut(s) 101, 268, 346, 400, 487, 692
NlaIV GGNNCC 2 cut(s) 55, 103
NmeAIII GCCGAG 1 cut(s) 513
NmuCI GTSAC 3 cut(s) 43, 196, 743
NspI RCATGY 1 cut(s) 692
PciSI GCTCTTC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 2 cut(s) 201, 549
PfeI GAWTC 1 cut(s) 230
Pfl23II CGTACG 2 cut(s) 355, 540
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 4 cut(s) 62, 157, 370, 388
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 2 cut(s) 590, 719
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 2 cut(s) 590, 719
Ppu21I YACGTR 1 cut(s) 359
Psp6I CCWGG 3 cut(s) 144, 222, 255
PspGI CCWGG 3 cut(s) 144, 222, 255
PspLI CGTACG 2 cut(s) 355, 540
PspN4I GGNNCC 2 cut(s) 55, 103
PspPI GGNCC 2 cut(s) 167, 238
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 3 cut(s) 332, 357, 542
RsaNI GTAC 3 cut(s) 331, 356, 541
SapI GCTCTTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 461, 606
SatI GCNGC 4 cut(s) 61, 156, 369, 387
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 167, 238
SchI GAGTC 2 cut(s) 590, 719
ScrFI CCNGG 4 cut(s) 146, 224, 257, 570
SduI GDGCHC 1 cut(s) 106
SfaNI GCATC 2 cut(s) 234, 288
SfoI GGCGCC 1 cut(s) 55
SgrAI CRCCGGYG 1 cut(s) 47
SinI GGWCC 2 cut(s) 167, 238
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 86
SsiI CCGC 6 cut(s) 60, 78, 110, 156, 368, 387
SspDI GGCGCC 1 cut(s) 53
SspI AATATT 1 cut(s) 285
StyD4I CCNGG 4 cut(s) 144, 222, 255, 568
StyI CCWWGG 2 cut(s) 396, 600
TaaI ACNGT 5 cut(s) 238, 251, 307, 577, 776
TaiI ACGT 5 cut(s) 129, 153, 198, 357, 361
TaqI TCGA 3 cut(s) 161, 228, 296
TaqII GACCGA 1 cut(s) 155
TasI AATT 1 cut(s) 86
TauI GCSGC 4 cut(s) 63, 158, 371, 389
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 461, 606
Tru9I TTAA 2 cut(s) 461, 606
TscAI CASTG 2 cut(s) 179, 194
TseFI GTSAC 3 cut(s) 43, 196, 743
Tsp45I GTSAC 3 cut(s) 43, 196, 743
TspDTI ATGAA 1 cut(s) 172
TspRI CASTG 2 cut(s) 179, 194
VpaK11BI GGWCC 2 cut(s) 167, 238
XapI RAATTY 1 cut(s) 86
XceI RCATGY 1 cut(s) 692
XmiI GTMKAC 1 cut(s) 771
ZraI GACGTC 3 cut(s) 127, 151, 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.