Rorug07G0313700

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000222
Physical Location & Seq
Forward (+)
31503603 .. 31505823
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0313700.1

Sequence Viewer

Length: 825 bp
ATGGAAGGATTCGAAGAATGGAAGAAACAGGCAGAGCAATGGTCATCTCAAGCATTGCAACAATGGAAGAAACAGGCAGAGCCATTATGGTCTCAAGCACATGAGTACATTCAGCAGGTTCCGCCTACTCAGATCTATGCTGCTCTTGCCATCTTGCTAGTAACCTCAGTTTTACTCTTATTAGGTAGGTTGTTTAAACGGCAAAAAGCTAATACCATATTGCTGAGTGGGCTTAGCGGGAGTGGAAAGACTGTTCTTTTCTATCAACTTCGGGATGGGTCTGCTCACCAAGGTACTGTGACATCAATGGAACCAAATGAGGGAACTTTTGTGCTCAATTCTGAAAAATCAAAGAATGGAAAGTTAAGGCCTGTGCATCTTGTTGATGTTCCTGGACATTCTCGTCTCAGACCCAAACTAGATGAGTTCCTGCCTCAAGCAGCTGGTATAGTTTTTGTGGTGGATGCTTTGGAATTCTTACCAAACTTGCGTGCTGTTTCAGAGTACCTGTACGATCTTTTGACCAAGGCAAGTGTGGTGAAGAAGAAAATTCCCATTCTTATTCTCTGCAACAAGACAGACAAAGTAACAGCACATAGCAAGGAGTTCATTCGCAAACAATTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAATATCAACAGCTGATATTGCAAATGACTTTACTCTTGGAGTACTTGGTGAACCATTTTCATTCACTCAGTGTCAGAACAAAGTTACAGTTGCAGAAGCTGCGGGTATTATAGGCGAGGTAGCTGAGGTGGAACGGTTCATCAGGGACCATGTAAAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

274

Amino Acids

30.61

Weight (kDa)

9.07

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 60 - 220 2.9e-17 ADP-ribosylation factor family
SRPRB PF09439 69 - 249 1.4e-35 Signal recognition particle receptor beta subunit
Gtr1_RagA PF04670 73 - 215 3.1e-06 Gtr1/RagA G protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 402
Acc36I ACCTGC 1 cut(s) 106
AciI CCGC 3 cut(s) 122, 237, 764
AcsI RAATTY 2 cut(s) 473, 549
AdeI CACNNNGTG 1 cut(s) 732
AfaI GTAC 5 cut(s) 107, 295, 506, 512, 705
AfiI CCNNNNNNNGG 1 cut(s) 320
AjnI CCWGG 1 cut(s) 391
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 5 cut(s) 209, 443, 674, 761, 785
AluI AGCT 5 cut(s) 209, 443, 674, 761, 785
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 96, 410
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 140, 440, 761
ApoI RAATTY 2 cut(s) 473, 549
AspS9I GGNCC 1 cut(s) 808
AsuHPI GGTGA 3 cut(s) 278, 550, 722
AsuII TTCGAA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 808
Bbv12I GWGCWC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 3 cut(s) 127, 452, 748
BccI CCATC 2 cut(s) 158, 269
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 96, 410
BfaI CTAG 2 cut(s) 158, 419
BfuAI ACCTGC 1 cut(s) 106
BglII AGATCT 1 cut(s) 132
BisI GCNGC 3 cut(s) 141, 441, 762
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 3 cut(s) 142, 442, 763
BmcAI AGTACT 1 cut(s) 705
Bme1390I CCNGG 1 cut(s) 393
Bme18I GGWCC 1 cut(s) 808
BmgT120I GGNCC 1 cut(s) 808
BmiI GGNNCC 3 cut(s) 120, 312, 809
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 3 cut(s) 385, 454, 659
Bpu10I CCTNAGC 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 12
BpuEI CTTGAG 3 cut(s) 33, 78, 420
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 289, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse3DI GCAATG 2 cut(s) 44, 53
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 2 cut(s) 289, 525
BseGI GGATG 2 cut(s) 280, 469
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMI GCAATG 2 cut(s) 44, 53
BseMII CTCAG 6 cut(s) 143, 180, 215, 421, 743, 777
BseXI GCAGC 3 cut(s) 127, 452, 748
BshFI GGCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 336
BslFI GGGAC 1 cut(s) 821
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 2 cut(s) 96, 410
BsmBI CGTCTC 1 cut(s) 410
BsmFI GGGAC 1 cut(s) 821
BsnI GGCC 1 cut(s) 370
Bso31I GGTCTC 1 cut(s) 96
Bsp119I TTCGAA 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 2 cut(s) 132, 514
Bsp1720I GCTNAGC 1 cut(s) 233
BspACI CCGC 3 cut(s) 122, 237, 764
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 6 cut(s) 142, 179, 216, 420, 742, 778
BspLI GGNNCC 3 cut(s) 120, 312, 809
BspMI ACCTGC 1 cut(s) 106
BspT104I TTCGAA 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 96
BsrDI GCAATG 2 cut(s) 44, 53
BssECI CCNNGG 2 cut(s) 289, 525
BssMI GATC 2 cut(s) 132, 514
BssT1I CCWWGG 2 cut(s) 289, 525
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 4 cut(s) 253, 298, 751, 798
BstAPI GCANNNNNTGC 1 cut(s) 761
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 492
BstDEI CTNAG 8 cut(s) 129, 166, 224, 233, 407, 729, 786, 822
BstF5I GGATG 2 cut(s) 280, 469
BstKTI GATC 2 cut(s) 135, 517
BstMAI GTCTC 2 cut(s) 96, 410
BstMBI GATC 2 cut(s) 132, 514
BstMWI GCNNNNNNNGC 5 cut(s) 121, 146, 229, 680, 761
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 127, 452, 748
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 280, 469
BtsIMutI CAGTG 1 cut(s) 737
BveI ACCTGC 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 492
CaiI CAGNNNCTG 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 808
Csp6I GTAC 5 cut(s) 106, 294, 505, 511, 704
CviAII CATG 2 cut(s) 101, 812
CviJI RGCY 8 cut(s) 82, 209, 232, 370, 443, 674, 761, 785
CviKI_1 RGCY 8 cut(s) 82, 209, 232, 370, 443, 674, 761, 785
CviQI GTAC 5 cut(s) 106, 294, 505, 511, 704
DdeI CTNAG 8 cut(s) 129, 166, 224, 233, 407, 729, 786, 822
DpnI GATC 2 cut(s) 134, 516
DpnII GATC 2 cut(s) 132, 514
DraI TTTAAA 1 cut(s) 196
DraIII CACNNNGTG 1 cut(s) 732
DrdI GACNNNNNNGTC 1 cut(s) 402
DseDI GACNNNNNNGTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 289, 525
Eco147I AGGCCT 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 808
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 2 cut(s) 289, 525
ErhI CCWWGG 2 cut(s) 289, 525
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 2 cut(s) 104, 815
FaiI YATR 8 cut(s) 88, 102, 138, 218, 449, 597, 773, 813
FaqI GGGAC 1 cut(s) 821
FatI CATG 2 cut(s) 100, 811
FauI CCCGC 2 cut(s) 230, 757
Fnu4HI GCNGC 3 cut(s) 141, 441, 762
FokI GGATG 2 cut(s) 287, 476
Fsp4HI GCNGC 3 cut(s) 141, 441, 762
FspBI CTAG 2 cut(s) 158, 419
GluI GCNGC 3 cut(s) 141, 441, 762
HaeIII GGCC 1 cut(s) 370
Hin1II CATG 2 cut(s) 104, 815
HinfI GANTC 1 cut(s) 9
HphI GGTGA 3 cut(s) 278, 550, 722
Hpy166II GTNNAC 1 cut(s) 713
Hpy188I TCNGA 5 cut(s) 132, 343, 410, 502, 738
Hpy188III TCNNGA 2 cut(s) 272, 654
Hpy8I GTNNAC 1 cut(s) 713
HpyAV CCTTC 1 cut(s) 622
HpyCH4III ACNGT 4 cut(s) 253, 298, 751, 798
HpyCH4V TGCA 6 cut(s) 58, 376, 570, 662, 683, 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 121, 146, 229, 680, 761
HpyF3I CTNAG 8 cut(s) 129, 166, 224, 233, 407, 729, 786, 822
Hsp92II CATG 2 cut(s) 104, 815
Kzo9I GATC 2 cut(s) 132, 514
Lsp1109I GCAGC 3 cut(s) 127, 452, 748
LweI GCATC 3 cut(s) 385, 454, 659
MaeI CTAG 2 cut(s) 158, 419
MaeIII GTNAC 4 cut(s) 160, 298, 586, 745
MalI GATC 2 cut(s) 134, 516
MboI GATC 2 cut(s) 132, 514
MboII GAAGA 5 cut(s) 26, 34, 79, 553, 556
MfeI CAATTG 1 cut(s) 620
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 6 cut(s) 337, 473, 549, 620, 633, 641
MnlI CCTC 5 cut(s) 175, 313, 444, 772, 781
MseI TTAA 2 cut(s) 195, 365
MspA1I CMGCKG 2 cut(s) 443, 674
MspR9I CCNGG 1 cut(s) 393
MssI GTTTAAAC 1 cut(s) 196
MunI CAATTG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 5 cut(s) 121, 146, 229, 680, 761
NdeII GATC 2 cut(s) 132, 514
NlaIII CATG 2 cut(s) 104, 815
NlaIV GGNNCC 3 cut(s) 120, 312, 809
NmuCI GTSAC 1 cut(s) 298
NspV TTCGAA 1 cut(s) 12
PceI AGGCCT 1 cut(s) 370
PfeI GAWTC 1 cut(s) 9
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 3 cut(s) 142, 442, 763
PmeI GTTTAAAC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 3 cut(s) 120, 312, 809
PspPI GGNCC 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 132
PvuII CAGCTG 2 cut(s) 443, 674
RsaI GTAC 5 cut(s) 107, 295, 506, 512, 705
RsaNI GTAC 5 cut(s) 106, 294, 505, 511, 704
SaqAI TTAA 2 cut(s) 195, 365
SatI GCNGC 3 cut(s) 141, 441, 762
Sau3AI GATC 2 cut(s) 132, 514
Sau96I GGNCC 1 cut(s) 808
ScaI AGTACT 1 cut(s) 705
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 3 cut(s) 385, 454, 659
SfuI TTCGAA 1 cut(s) 12
SinI GGWCC 1 cut(s) 808
SmlI CTYRAG 3 cut(s) 48, 93, 435
SmoI CTYRAG 3 cut(s) 48, 93, 435
Sse9I AATT 6 cut(s) 337, 473, 549, 620, 633, 641
SseBI AGGCCT 1 cut(s) 370
SsiI CCGC 3 cut(s) 122, 237, 764
SspMI CTAG 2 cut(s) 158, 419
StuI AGGCCT 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 2 cut(s) 289, 525
TaaI ACNGT 4 cut(s) 253, 298, 751, 798
TaqI TCGA 1 cut(s) 12
TasI AATT 6 cut(s) 337, 473, 549, 620, 633, 641
TatI WGTACW 2 cut(s) 105, 703
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 195, 365
Tru9I TTAA 2 cut(s) 195, 365
TscAI CASTG 1 cut(s) 737
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 3 cut(s) 140, 440, 761
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 598, 711, 790
TspRI CASTG 1 cut(s) 737
VpaK11BI GGWCC 1 cut(s) 808
XapI RAATTY 2 cut(s) 473, 549
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XspI CTAG 2 cut(s) 158, 419
ZrmI AGTACT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.