Rw7G038870

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000222
Physical Location & Seq
Forward (+)
59473422 .. 59476157
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G038870.1

Sequence Viewer

Length: 771 bp
ATGAGCATGTATCTCTTTATTCTCCACGGCAAGGTGGCCATCGTCACCGGCGCCGCCAGCGGTATCGGAGCAGTCACGGCGCGTCACTTTGCAGACCACGGCGCTCTCGCCATCGTGATCGCTGACATCCAAGACGCCAAGGGCCGAGAAGTGGCTGCATCCATCGGCTCCCACCGCTGCACCTACGTCCACTGCGACGTCACCGACGAGGATCAGGTCAAAACCCTGGTCGAGTTCACGGTCAAGCACTACGGCAGCCTCGACGTCATGTACAGCAACGTGGGGATAACCAGTGCGTCGGCGCAGACGGTGCTGGAGCTCGACCTGTCCGGGTACGACAGGGTGATGGCGGCGAACGCGCGGGGGATGGCGGCTTGTGTGAAGCACGCGGCGCGTACGATGGTGGAGAAGGGGGTGAAGGGGAGCATAGTGTGCGCGACGAGCTTCTCGGCGGCCTGCGGGACGCACGCGGTGCTGGGGCTGGTGAGGTCGGCGAGCGTGCAGCTGGCTCCGCGTGGTGTGCGCGTGAACTGTGTGTCGCCGGGCTTGGTGGCGACGCCGATGGTGTGCGACGCATTGAAGATTAGTGCGGAAGAGCTGCAGGAGAAAATGGCGGCGATTTATTCGGGAAGGGATGAACCGCTGATGGAGAAAAACGTGGCGGATGCGGTGGTGTTTTTGGCTTGTGAGGACTCGGCGTTCGTCACCGGCCATAATTTGGTGGTTGATGGTGGACTTGGCACCAAGTCCATAGCTATATTGGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

256

Amino Acids

26.73

Weight (kDa)

5.97

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 189 6.9e-37 short chain dehydrogenase
KR PF08659 14 - 154 1.7e-07 KR domain
adh_short_C2 PF13561 17 - 246 4e-50 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 201, 267
AccB1I GGYRCC 2 cut(s) 50, 740
AccB7I CCANNNNNTGG 1 cut(s) 718
AccII CGCG 9 cut(s) 82, 359, 361, 389, 394, 437, 470, 514, 525
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 2 cut(s) 36, 709
AcyI GRCGYC 5 cut(s) 51, 135, 198, 264, 557
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 3 cut(s) 272, 335, 397
AfiI CCNNNNNNNGG 3 cut(s) 31, 151, 718
AgsI TTSAA 1 cut(s) 580
AjnI CCWGG 1 cut(s) 225
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 5 cut(s) 319, 444, 505, 598, 755
AluI AGCT 5 cut(s) 319, 444, 505, 598, 755
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 1 cut(s) 219
AoxI GGCC 4 cut(s) 36, 142, 453, 709
ApeKI GCWGC 5 cut(s) 155, 177, 255, 502, 598
ArsI GACNNNNNNTTYG 4 cut(s) 213, 245, 683, 715
AspLEI GCGC 8 cut(s) 53, 82, 104, 304, 361, 394, 437, 525
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 2 cut(s) 331, 543
AsuHPI GGTGA 6 cut(s) 37, 193, 355, 427, 496, 697
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 2 cut(s) 50, 740
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 5 cut(s) 142, 164, 267, 514, 585
BccI CCATC 9 cut(s) 47, 119, 170, 340, 361, 394, 556, 640, 722
BceAI ACGGC 4 cut(s) 43, 93, 115, 268
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 2 cut(s) 331, 543
BfmI CTRYAG 1 cut(s) 599
BfoI RGCGCY 2 cut(s) 54, 105
Bme1390I CCNGG 3 cut(s) 227, 331, 543
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 4 cut(s) 52, 169, 510, 742
BmrFI CCNGG 3 cut(s) 227, 331, 543
BmsI GCATC 2 cut(s) 167, 655
BpmI CTGGAG 1 cut(s) 335
BpuMI CCSGG 2 cut(s) 331, 543
BsaHI GRCGYC 5 cut(s) 51, 135, 198, 264, 557
BsaJI CCNNGG 4 cut(s) 25, 97, 138, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 151, 718
Bse118I RCCGGY 2 cut(s) 47, 707
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 4 cut(s) 25, 97, 138, 225
BseGI GGATG 5 cut(s) 126, 158, 372, 640, 670
BseLI CCNNNNNNNGG 3 cut(s) 31, 151, 718
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 5 cut(s) 142, 164, 267, 514, 585
BseYI CCCAGC 1 cut(s) 475
BsgI GTGCAG 2 cut(s) 163, 521
Bsh1236I CGCG 9 cut(s) 82, 359, 361, 389, 394, 437, 470, 514, 525
BshFI GGCC 4 cut(s) 38, 144, 455, 711
BshNI GGYRCC 2 cut(s) 50, 740
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 4 cut(s) 48, 330, 542, 708
BsiWI CGTACG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 31, 151, 718
BsmFI GGGAC 1 cut(s) 475
BsnI GGCC 4 cut(s) 38, 144, 455, 711
Bsp1286I GDGCHC 1 cut(s) 321
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 2 cut(s) 117, 211
BspANI GGCC 4 cut(s) 38, 144, 455, 711
BspFNI CGCG 9 cut(s) 82, 359, 361, 389, 394, 437, 470, 514, 525
BspLI GGNNCC 4 cut(s) 52, 169, 510, 742
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 588
BspT107I GGYRCC 2 cut(s) 50, 740
BsrFI RCCGGY 2 cut(s) 47, 707
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 2 cut(s) 47, 707
BssECI CCNNGG 4 cut(s) 25, 97, 138, 225
BssMI GATC 2 cut(s) 117, 211
BssNI GRCGYC 5 cut(s) 51, 135, 198, 264, 557
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 241, 310, 533
Bst6I CTCTTC 1 cut(s) 588
BstACI GRCGYC 5 cut(s) 51, 135, 198, 264, 557
BstAPI GCANNNNNTGC 3 cut(s) 310, 432, 472
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 7 cut(s) 58, 387, 457, 468, 496, 500, 507
BstDSI CCRYGG 2 cut(s) 25, 97
BstF5I GGATG 5 cut(s) 126, 158, 372, 640, 670
BstFNI CGCG 9 cut(s) 82, 359, 361, 389, 394, 437, 470, 514, 525
BstH2I RGCGCY 2 cut(s) 54, 105
BstHHI GCGC 8 cut(s) 53, 82, 104, 304, 361, 394, 437, 525
BstKTI GATC 2 cut(s) 120, 214
BstMBI GATC 2 cut(s) 117, 211
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 10
BstSCI CCNGG 3 cut(s) 225, 329, 541
BstSFI CTRYAG 1 cut(s) 599
BstUI CGCG 9 cut(s) 82, 359, 361, 389, 394, 437, 470, 514, 525
BstV1I GCAGC 5 cut(s) 142, 164, 267, 514, 585
BsuRI GGCC 4 cut(s) 38, 144, 455, 711
BtgI CCRYGG 2 cut(s) 25, 97
BtsCI GGATG 5 cut(s) 126, 158, 372, 640, 670
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 190, 298
Cac8I GCNNGC 7 cut(s) 58, 387, 457, 468, 496, 500, 507
CfoI GCGC 8 cut(s) 53, 82, 104, 304, 361, 394, 437, 525
Cfr10I RCCGGY 2 cut(s) 47, 707
Cfr13I GGNCC 1 cut(s) 142
CseI GACGC 6 cut(s) 71, 143, 285, 472, 565, 581
Csp6I GTAC 3 cut(s) 271, 334, 396
CviAII CATG 2 cut(s) 7, 268
CviQI GTAC 3 cut(s) 271, 334, 396
DinI GGCGCC 1 cut(s) 52
DpnI GATC 2 cut(s) 119, 213
DpnII GATC 2 cut(s) 117, 211
DraIII CACNNNGTG 1 cut(s) 472
EaeI YGGCCR 2 cut(s) 36, 709
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 677
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 321
Eco53kI GAGCTC 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 321
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 10, 271
FaiI YATR 6 cut(s) 8, 269, 428, 714, 752, 758
FaqI GGGAC 1 cut(s) 475
FatI CATG 2 cut(s) 6, 267
FauI CCCGC 2 cut(s) 354, 452
FokI GGATG 5 cut(s) 113, 145, 379, 647, 677
FriOI GRGCYC 1 cut(s) 321
GlaI GCGC 8 cut(s) 52, 81, 103, 303, 360, 393, 436, 524
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 2 cut(s) 54, 105
HaeIII GGCC 4 cut(s) 38, 144, 455, 711
HapII CCGG 4 cut(s) 48, 330, 542, 708
HgaI GACGC 6 cut(s) 71, 143, 285, 472, 565, 581
HhaI GCGC 8 cut(s) 53, 82, 104, 304, 361, 394, 437, 525
Hin1I GRCGYC 5 cut(s) 51, 135, 198, 264, 557
Hin1II CATG 2 cut(s) 10, 271
Hin6I GCGC 8 cut(s) 51, 80, 102, 302, 359, 392, 435, 523
HinP1I GCGC 8 cut(s) 51, 80, 102, 302, 359, 392, 435, 523
HinfI GANTC 1 cut(s) 692
HpaII CCGG 4 cut(s) 48, 330, 542, 708
HphI GGTGA 6 cut(s) 37, 193, 355, 427, 496, 697
Hpy166II GTNNAC 4 cut(s) 190, 237, 529, 734
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 115, 627
Hpy8I GTNNAC 4 cut(s) 190, 237, 529, 734
Hpy99I CGWCG 7 cut(s) 200, 209, 266, 301, 442, 559, 575
HpyAV CCTTC 3 cut(s) 403, 412, 624
HpyCH4III ACNGT 3 cut(s) 241, 310, 533
HpyCH4IV ACGT 5 cut(s) 186, 198, 264, 279, 657
HpyCH4V TGCA 5 cut(s) 92, 158, 180, 502, 601
HpySE526I ACGT 5 cut(s) 186, 198, 264, 279, 657
Hsp92I GRCGYC 5 cut(s) 51, 135, 198, 264, 557
Hsp92II CATG 2 cut(s) 10, 271
HspAI GCGC 8 cut(s) 51, 80, 102, 302, 359, 392, 435, 523
KasI GGCGCC 1 cut(s) 50
Kzo9I GATC 2 cut(s) 117, 211
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 5 cut(s) 68, 173, 316, 423, 514
Lsp1109I GCAGC 5 cut(s) 142, 164, 267, 514, 585
LweI GCATC 2 cut(s) 167, 655
MaeII ACGT 5 cut(s) 186, 198, 264, 279, 657
MaeIII GTNAC 5 cut(s) 43, 73, 83, 199, 703
MalI GATC 2 cut(s) 119, 213
MboI GATC 2 cut(s) 117, 211
MboII GAAGA 2 cut(s) 592, 605
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 1 cut(s) 715
MluNI TGGCCA 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 1 cut(s) 686
MnlI CCTC 4 cut(s) 202, 269, 480, 682
Mox20I TGGCCA 1 cut(s) 38
MscI TGGCCA 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 4 cut(s) 60, 177, 505, 643
MspI CCGG 4 cut(s) 48, 330, 542, 708
MspR9I CCNGG 3 cut(s) 227, 331, 543
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 9 cut(s) 82, 359, 361, 389, 394, 437, 470, 514, 525
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 2 cut(s) 331, 543
NdeII GATC 2 cut(s) 117, 211
NlaIII CATG 2 cut(s) 10, 271
NlaIV GGNNCC 4 cut(s) 52, 169, 510, 742
NmeAIII GCCGAG 3 cut(s) 170, 428, 674
NmuCI GTSAC 5 cut(s) 43, 73, 83, 199, 703
NspI RCATGY 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 588
PcsI WCGNNNNNNNCGW 3 cut(s) 192, 204, 258
Pfl23II CGTACG 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 718
PleI GAGTC 1 cut(s) 686
PluTI GGCGCC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 1 cut(s) 225
PspLI CGTACG 1 cut(s) 395
PspN4I GGNNCC 4 cut(s) 52, 169, 510, 742
PspPI GGNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 603
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 3 cut(s) 272, 335, 397
RsaNI GTAC 3 cut(s) 271, 334, 396
SacI GAGCTC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 588
Sau3AI GATC 2 cut(s) 117, 211
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 3 cut(s) 227, 331, 543
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 2 cut(s) 167, 655
SfcI CTRYAG 1 cut(s) 599
SfoI GGCGCC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 47
Sse9I AATT 1 cut(s) 715
SspDI GGCGCC 1 cut(s) 50
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 3 cut(s) 225, 329, 541
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 3 cut(s) 241, 310, 533
TaiI ACGT 5 cut(s) 189, 201, 267, 282, 660
TaqI TCGA 3 cut(s) 231, 261, 321
TasI AATT 1 cut(s) 715
TatI WGTACW 1 cut(s) 270
TauI GCSGC 6 cut(s) 56, 353, 374, 392, 455, 617
TscAI CASTG 2 cut(s) 197, 298
TseFI GTSAC 5 cut(s) 43, 73, 83, 199, 703
TseI GCWGC 5 cut(s) 155, 177, 255, 502, 598
Tsp45I GTSAC 5 cut(s) 43, 73, 83, 199, 703
TspDTI ATGAA 1 cut(s) 651
TspRI CASTG 2 cut(s) 197, 298
Van91I CCANNNNNTGG 1 cut(s) 718
XceI RCATGY 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
ZraI GACGTC 2 cut(s) 199, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.