Rh7BG034700

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000222
Physical Location & Seq
Forward (+)
2296768 .. 2298204
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG034700.1

Sequence Viewer

Length: 378 bp
ATGACAGAACTCAACAAGAAGCTTCAAGACAAGGTGGCAATAGTTACCGATGGCGCCAGCGGCATTGGCGAAGCCACGGCGCGTCATTTTGCATTTCATGGTGCACGTGCGGTGGTCATCGCCGACGTTCAGGACCAAAAGGGCCAGGACGTCGCCGCTTCGATCGGCCCTCACTGCACCTACATCCACTGCGACGTAACAGACGAGGATCAAGTGAAGAGCCTGGTCGAATCAACGGTCCAGATGCACGGCCGCCTGGACATCATGTTCAGCAACGCCGGAATATTCTGCTGTCCGAGCAGACGGTGCTGGAGTTTGACTTATCCAAGTACGACAAGCTGCTGGCGGTCAATGTACGTGGGATGGCGGCGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

125

Amino Acids

13.84

Weight (kDa)

6.94

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 95 2.3e-19 short chain dehydrogenase
KR PF08659 14 - 94 1.4e-07 KR domain
adh_short_C2 PF13561 19 - 96 8.8e-17 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccB1I GGYRCC 1 cut(s) 53
AccII CGCG 1 cut(s) 82
AciI CCGC 6 cut(s) 60, 110, 156, 253, 346, 367
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 250
AcvI CACGTG 1 cut(s) 107
AcyI GRCGYC 2 cut(s) 54, 150
AfaI GTAC 2 cut(s) 331, 356
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 3 cut(s) 144, 222, 255
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 2 cut(s) 22, 339
AluI AGCT 2 cut(s) 22, 339
Alw21I GWGCWC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 102
AlwI GGATC 1 cut(s) 216
AoxI GGCC 3 cut(s) 142, 166, 250
ApaLI GTGCAC 1 cut(s) 102
ApeKI GCWGC 1 cut(s) 339
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 2 cut(s) 56, 82
AspS9I GGNCC 4 cut(s) 133, 142, 167, 238
AvaII GGWCC 2 cut(s) 133, 238
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 53
BbrPI CACGTG 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 326
BccI CCATC 2 cut(s) 44, 357
BceAI ACGGC 2 cut(s) 93, 265
BciT130I CCWGG 3 cut(s) 146, 224, 257
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 5 cut(s) 61, 156, 253, 340, 368
BlsI GCNGC 5 cut(s) 62, 157, 254, 341, 369
Bme1390I CCNGG 3 cut(s) 146, 224, 257
Bme18I GGWCC 2 cut(s) 133, 238
BmgT120I GGNCC 4 cut(s) 133, 142, 167, 238
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 146, 224, 257
BmsI GCATC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 331
BsaAI YACGTR 2 cut(s) 107, 358
BsaHI GRCGYC 2 cut(s) 54, 150
BsaJI CCNNGG 1 cut(s) 75
BseBI CCWGG 3 cut(s) 146, 224, 257
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 183, 368
BseSI GKGCMC 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 2 cut(s) 165, 253
BshFI GGCC 3 cut(s) 144, 168, 252
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 2 cut(s) 165, 253
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 279
BsnI GGCC 3 cut(s) 144, 168, 252
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 162, 208
BspACI CCGC 6 cut(s) 60, 110, 156, 253, 346, 367
BspANI GGCC 3 cut(s) 144, 168, 252
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 162, 208
BssNI GRCGYC 2 cut(s) 54, 150
Bst2UI CCWGG 3 cut(s) 146, 224, 257
Bst4CI ACNGT 2 cut(s) 238, 306
Bst6I CTCTTC 1 cut(s) 212
BstACI GRCGYC 2 cut(s) 54, 150
BstAPI GCANNNNNTGC 1 cut(s) 306
BstBAI YACGTR 2 cut(s) 107, 358
BstC8I GCNNGC 2 cut(s) 58, 344
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 183, 368
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 82
BstKTI GATC 2 cut(s) 165, 211
BstMBI GATC 2 cut(s) 162, 208
BstMCI CGRYCG 2 cut(s) 165, 253
BstMWI GCNNNNNNNGC 5 cut(s) 60, 66, 174, 297, 306
BstNI CCWGG 3 cut(s) 146, 224, 257
BstSCI CCNGG 3 cut(s) 144, 222, 255
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 326
BstZI CGGCCG 1 cut(s) 250
BsuRI GGCC 3 cut(s) 144, 168, 252
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 183, 368
BtsI GCAGTG 2 cut(s) 172, 187
BtsIMutI CAGTG 2 cut(s) 172, 187
Cac8I GCNNGC 2 cut(s) 58, 344
CfoI GCGC 2 cut(s) 56, 82
Cfr13I GGNCC 4 cut(s) 133, 142, 167, 238
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 330, 355
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 2 cut(s) 98, 265
CviJI RGCY 7 cut(s) 22, 74, 144, 168, 222, 252, 339
CviKI_1 RGCY 7 cut(s) 22, 74, 144, 168, 222, 252, 339
CviQI GTAC 2 cut(s) 330, 355
DinI GGCGCC 1 cut(s) 55
DpnI GATC 2 cut(s) 164, 210
DpnII GATC 2 cut(s) 162, 208
EaeI YGGCCR 1 cut(s) 250
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 212
EclXI CGGCCG 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 133, 238
Eco52I CGGCCG 1 cut(s) 250
Eco72I CACGTG 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 144, 222, 255
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaeI CATG 2 cut(s) 101, 268
FaiI YATR 2 cut(s) 99, 266
FatI CATG 2 cut(s) 97, 264
Fnu4HI GCNGC 5 cut(s) 61, 156, 253, 340, 368
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 5 cut(s) 61, 156, 253, 340, 368
GlaI GCGC 2 cut(s) 55, 81
GluI GCNGC 5 cut(s) 61, 156, 253, 340, 368
GsuI CTGGAG 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 3 cut(s) 144, 168, 252
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 71
HhaI GCGC 2 cut(s) 56, 82
Hin1I GRCGYC 2 cut(s) 54, 150
Hin1II CATG 2 cut(s) 101, 268
Hin6I GCGC 2 cut(s) 54, 80
HinP1I GCGC 2 cut(s) 54, 80
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 3 cut(s) 26, 131, 241
Hpy8I GTNNAC 1 cut(s) 104
Hpy99I CGWCG 3 cut(s) 128, 155, 197
HpyCH4III ACNGT 2 cut(s) 238, 306
HpyCH4IV ACGT 5 cut(s) 106, 126, 150, 195, 357
HpyCH4V TGCA 4 cut(s) 92, 104, 177, 247
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 66, 174, 297, 306
HpySE526I ACGT 5 cut(s) 106, 126, 150, 195, 357
Hsp92I GRCGYC 2 cut(s) 54, 150
Hsp92II CATG 2 cut(s) 101, 268
HspAI GCGC 2 cut(s) 54, 80
KasI GGCGCC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 162, 208
LguI GCTCTTC 1 cut(s) 212
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 234
MaeII ACGT 5 cut(s) 106, 126, 150, 195, 357
MaeIII GTNAC 2 cut(s) 43, 196
MalI GATC 2 cut(s) 164, 210
MboI GATC 2 cut(s) 162, 208
MboII GAAGA 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 106
Mly113I GGCGCC 1 cut(s) 54
MnlI CCTC 2 cut(s) 180, 199
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 3 cut(s) 146, 224, 257
MvaI CCWGG 3 cut(s) 146, 224, 257
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 5 cut(s) 60, 66, 174, 297, 306
NarI GGCGCC 1 cut(s) 54
NdeII GATC 2 cut(s) 162, 208
NlaIII CATG 2 cut(s) 101, 268
NlaIV GGNNCC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 5 cut(s) 62, 157, 254, 341, 369
Ple19I CGATCG 1 cut(s) 165
PluTI GGCGCC 1 cut(s) 57
PmaCI CACGTG 1 cut(s) 107
PmlI CACGTG 1 cut(s) 107
Ppu21I YACGTR 2 cut(s) 107, 358
Psp6I CCWGG 3 cut(s) 144, 222, 255
PspCI CACGTG 1 cut(s) 107
PspGI CCWGG 3 cut(s) 144, 222, 255
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 4 cut(s) 133, 142, 167, 238
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 2 cut(s) 331, 356
RsaNI GTAC 2 cut(s) 330, 355
SapI GCTCTTC 1 cut(s) 212
SatI GCNGC 5 cut(s) 61, 156, 253, 340, 368
Sau3AI GATC 2 cut(s) 162, 208
Sau96I GGNCC 4 cut(s) 133, 142, 167, 238
ScrFI CCNGG 3 cut(s) 146, 224, 257
SduI GDGCHC 1 cut(s) 106
SetI ASST 9 cut(s) 24, 36, 109, 129, 153, 182, 198, 341, 360
SfaNI GCATC 1 cut(s) 234
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 2 cut(s) 133, 238
SsiI CCGC 6 cut(s) 60, 110, 156, 253, 346, 367
SspDI GGCGCC 1 cut(s) 53
SspI AATATT 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 144, 222, 255
TaaI ACNGT 2 cut(s) 238, 306
TaiI ACGT 5 cut(s) 109, 129, 153, 198, 360
TaqI TCGA 2 cut(s) 161, 228
TauI GCSGC 4 cut(s) 63, 158, 255, 370
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 2 cut(s) 179, 194
TseI GCWGC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 86
TspRI CASTG 2 cut(s) 179, 194
VneI GTGCAC 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 133, 238
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.