Rh7BG439300

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000222
Physical Location & Seq
Forward (+)
50601694 .. 50602192
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG439300.1

Sequence Viewer

Length: 282 bp
ATGACTGAGCAGCCCATACAACTCCAAAAGCTCCACGGCAAGGTGGACATCTTCACCGGCGCCGCCAGCAGCATCGGTGCAGTCACCGCGCGCCACTTTGCCGACCACGGAGCTCGCGTCGTTGTGATGATCGACGTCCAAGACGCCAAGGGCCGAGAACTGGCCACATCCATCGGCTCCCACCGCTGTACCTACGTCCACTGCGACATCACCGACGAGGACCAGGTCGAATCGCTAGTCGACTCCACCGTCGAAAAGTACAGCCAACTCGACGTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

93

Amino Acids

10.17

Weight (kDa)

5.12

Isoelectric Point (pI)

22.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 17 - 93 1.6e-14 short chain dehydrogenase
KR PF08659 17 - 89 1.9e-07 KR domain
adh_short_C2 PF13561 20 - 93 2.5e-15 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 248
AatII GACGTC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 240
AccII CGCG 3 cut(s) 89, 91, 117
AciI CCGC 3 cut(s) 63, 87, 184
AcoI YGGCCR 1 cut(s) 162
AcyI GRCGYC 3 cut(s) 60, 135, 144
AfaI GTAC 2 cut(s) 190, 260
AfiI CCNNNNNNNGG 2 cut(s) 40, 160
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 31, 113
AluI AGCT 2 cut(s) 31, 113
Alw21I GWGCWC 1 cut(s) 115
AoxI GGCC 2 cut(s) 151, 162
ApeKI GCWGC 2 cut(s) 10, 69
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 3 cut(s) 62, 91, 93
AspS9I GGNCC 2 cut(s) 151, 220
AsuHPI GGTGA 3 cut(s) 46, 76, 202
AvaII GGWCC 1 cut(s) 220
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BalI TGGCCA 1 cut(s) 164
BanI GGYRCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 22, 81
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 224
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 3 cut(s) 11, 63, 70
BlsI GCNGC 3 cut(s) 12, 64, 71
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 151, 220
BmiI GGNNCC 2 cut(s) 61, 178
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 81
BsaHI GRCGYC 3 cut(s) 60, 135, 144
BsaJI CCNNGG 3 cut(s) 34, 106, 147
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 160
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 34, 106, 147
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 40, 160
BseNI ACTGG 1 cut(s) 165
BsePI GCGCGC 1 cut(s) 89
BseXI GCAGC 2 cut(s) 22, 81
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 3 cut(s) 89, 91, 117
BshFI GGCC 2 cut(s) 153, 164
BshNI GGYRCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 40, 160
BsnI GGCC 2 cut(s) 153, 164
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 3 cut(s) 63, 87, 184
BspANI GGCC 2 cut(s) 153, 164
BspFNI CGCG 3 cut(s) 89, 91, 117
BspLI GGNNCC 2 cut(s) 61, 178
BspT107I GGYRCC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 34, 106, 147
BssHII GCGCGC 1 cut(s) 89
BssMI GATC 1 cut(s) 129
BssNI GRCGYC 3 cut(s) 60, 135, 144
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 250
BstACI GRCGYC 3 cut(s) 60, 135, 144
BstC8I GCNNGC 3 cut(s) 67, 91, 115
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 34, 106
BstF5I GGATG 1 cut(s) 167
BstFNI CGCG 3 cut(s) 89, 91, 117
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 3 cut(s) 62, 91, 93
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 3 cut(s) 66, 86, 183
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 3 cut(s) 89, 91, 117
BstV1I GCAGC 2 cut(s) 22, 81
BsuRI GGCC 2 cut(s) 153, 164
BtgI CCRYGG 2 cut(s) 34, 106
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 3 cut(s) 67, 91, 115
CfoI GCGC 3 cut(s) 62, 91, 93
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 151, 220
CseI GACGC 2 cut(s) 106, 152
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 2 cut(s) 189, 259
CviJI RGCY 7 cut(s) 13, 31, 113, 153, 164, 177, 264
CviKI_1 RGCY 7 cut(s) 13, 31, 113, 153, 164, 177, 264
CviQI GTAC 2 cut(s) 189, 259
DdeI CTNAG 1 cut(s) 6
DinI GGCGCC 1 cut(s) 61
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
DrdI GACNNNNNNGTC 1 cut(s) 248
DseDI GACNNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 115
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 147
FaiI YATR 1 cut(s) 17
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 11, 63, 70
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 11, 63, 70
FspBI CTAG 1 cut(s) 236
GlaI GCGC 3 cut(s) 61, 90, 92
GluI GCNGC 3 cut(s) 11, 63, 70
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 2 cut(s) 153, 164
HapII CCGG 1 cut(s) 57
HgaI GACGC 2 cut(s) 106, 152
HhaI GCGC 3 cut(s) 62, 91, 93
Hin1I GRCGYC 3 cut(s) 60, 135, 144
Hin6I GCGC 3 cut(s) 60, 89, 91
HinP1I GCGC 3 cut(s) 60, 89, 91
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 2 cut(s) 230, 242
HpaII CCGG 1 cut(s) 57
HphI GGTGA 3 cut(s) 46, 76, 202
Hpy166II GTNNAC 3 cut(s) 46, 199, 241
Hpy8I GTNNAC 3 cut(s) 46, 199, 241
Hpy99I CGWCG 5 cut(s) 122, 137, 218, 254, 275
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 3 cut(s) 135, 195, 273
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 86, 183
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 3 cut(s) 135, 195, 273
Hsp92I GRCGYC 3 cut(s) 60, 135, 144
HspAI GCGC 3 cut(s) 60, 89, 91
KasI GGCGCC 1 cut(s) 59
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 3 cut(s) 36, 110, 182
LpnPI CCDG 5 cut(s) 70, 79, 146, 209, 236
Lsp1109I GCAGC 2 cut(s) 22, 81
LweI GCATC 1 cut(s) 81
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 1 cut(s) 236
MaeII ACGT 3 cut(s) 135, 195, 273
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 115
MlsI TGGCCA 1 cut(s) 164
MluNI TGGCCA 1 cut(s) 164
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 1 cut(s) 211
Mox20I TGGCCA 1 cut(s) 164
MscI TGGCCA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 3 cut(s) 89, 91, 117
MwoI GCNNNNNNNGC 3 cut(s) 66, 86, 183
NarI GGCGCC 1 cut(s) 60
NdeII GATC 1 cut(s) 129
NlaIV GGNNCC 2 cut(s) 61, 178
NmeAIII GCCGAG 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 82
PauI GCGCGC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 3 cut(s) 114, 201, 246
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 12, 64, 71
PleI GAGTC 1 cut(s) 236
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 236
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 61, 178
PspPI GGNCC 2 cut(s) 151, 220
PsyI GACNNNGTC 1 cut(s) 224
PteI GCGCGC 1 cut(s) 89
RsaI GTAC 2 cut(s) 190, 260
RsaNI GTAC 2 cut(s) 189, 259
SacI GAGCTC 1 cut(s) 115
SalI GTCGAC 1 cut(s) 239
SatI GCNGC 3 cut(s) 11, 63, 70
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 151, 220
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 115
SetI ASST 8 cut(s) 33, 45, 115, 138, 194, 198, 228, 276
SexAI ACCWGGT 1 cut(s) 222
SfaNI GCATC 1 cut(s) 81
SfoI GGCGCC 1 cut(s) 61
SgrAI CRCCGGYG 1 cut(s) 56
SinI GGWCC 1 cut(s) 220
SsiI CCGC 3 cut(s) 63, 87, 184
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 1 cut(s) 236
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 3 cut(s) 138, 198, 276
TaqI TCGA 5 cut(s) 132, 228, 240, 252, 270
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 10, 69
Tsp45I GTSAC 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 206
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 236
ZraI GACGTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.