Prupe.5G185700_v2.0.a1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000222
Physical Location & Seq
Forward (+)
15400408 .. 15401507
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G185700.1

Sequence Viewer

Length: 783 bp
ATGAGCACATTGAGGGAGAACAAATTGCAAGGCAAAATAGCCATCATAACCGGCGGCGCAAGCGGCATCGGCGAGGCCACCGCCCGCCTCTTCGCCAATCATGGCGCCGCCGTGGTGGTGATCGCTGACATCCAAGATGAATTGGGCCGTCAGGTAGCCGAATCCATCGGCACACATCGATGTACCTACGTGCACTGTGATGTGTCCGATGAAGATCAAGTGAAGACCATGGTGGAACAAACGGTGCGCAAATATGGGCACTTGGACATCATGTTTAGCAACGCTGGGATTTTGAGTAGCCCCGATCAGACCGTTCTTGACCTTGACTTTTCAGCCTTCGACCGTTTGTTCGACGTGAACGTGCGTGGCATGGCCTTGTGTGTCAAACATGCAGCGCGTGTTATGGTAGAGAGGCGCGTGAAAGGAAGCATTGTTTGCACGGCGAGCGTGGCTGCTAACCACGGCATGGCGATTCGGACCGACTACTGCATGTCGAAGCACGCGGTGCTCGGGTTGGTCCGGTCAGCAAGCGTGCAGCTCGGGGTGCACGGGATTAGGGTTAATTGCGTATCGCCGACTGCGTTGGCGACGCCGTTGACGTGCCGCGCGGCTGGGAAGGGAGTGGAGGAAGTTGAGAAGGAGTATAAGAAGTTCGCACGCTTGAAAGGGATTGTGCTGAAAGCGGGACACGTGGCGGATGCTGTGCTATATCTTGCTTGCGGTGAGTCGGAGTTTGTGACTGGGCATGACTTGGTCGTGGATGGTGGCTTTTTTCGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

261

Amino Acids

27.9

Weight (kDa)

7.64

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 466
AccII CGCG 5 cut(s) 397, 417, 503, 606, 608
AcvI CACGTG 1 cut(s) 691
AcyI GRCGYC 2 cut(s) 105, 590
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 1 cut(s) 664
AjiI CACGTC 2 cut(s) 355, 600
AluBI AGCT 1 cut(s) 538
AluI AGCT 1 cut(s) 538
Alw21I GWGCWC 4 cut(s) 8, 195, 510, 549
Alw44I GTGCAC 2 cut(s) 191, 545
Ama87I CYCGRG 2 cut(s) 509, 539
AoxI GGCC 3 cut(s) 75, 145, 372
ApaLI GTGCAC 2 cut(s) 191, 545
ApeKI GCWGC 3 cut(s) 392, 452, 535
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 6 cut(s) 59, 107, 249, 397, 417, 608
AspS9I GGNCC 3 cut(s) 145, 477, 517
AsuHPI GGTGA 2 cut(s) 130, 734
AvaI CYCGRG 2 cut(s) 509, 539
AvaII GGWCC 2 cut(s) 477, 517
BaeGI GKGCMC 3 cut(s) 195, 261, 549
BanI GGYRCC 1 cut(s) 104
BbrPI CACGTG 1 cut(s) 691
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 4 cut(s) 8, 195, 510, 549
BbvI GCAGC 3 cut(s) 404, 439, 547
BccI CCATC 3 cut(s) 50, 173, 755
BceAI ACGGC 5 cut(s) 95, 132, 456, 478, 577
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 8 cut(s) 55, 64, 108, 393, 453, 536, 604, 609
BlsI GCNGC 8 cut(s) 56, 65, 109, 394, 454, 537, 605, 610
Bme18I GGWCC 2 cut(s) 477, 517
BmeT110I CYCGRG 2 cut(s) 509, 539
BmgBI CACGTC 2 cut(s) 355, 600
BmgT120I GGNCC 3 cut(s) 145, 477, 517
BmiI GGNNCC 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 750
BmsI GCATC 2 cut(s) 75, 688
BmuI ACTGGG 1 cut(s) 750
BpiI GAAGAC 1 cut(s) 230
Bsa29I ATCGAT 1 cut(s) 178
BsaAI YACGTR 2 cut(s) 190, 691
BsaBI GATNNNNATC 1 cut(s) 213
BsaHI GRCGYC 2 cut(s) 105, 590
BsaJI CCNNGG 3 cut(s) 111, 228, 460
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 745
Bse8I GATNNNNATC 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 178
BseDI CCNNGG 3 cut(s) 111, 228, 460
BseGI GGATG 3 cut(s) 129, 703, 766
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 466
BseNI ACTGG 1 cut(s) 745
BseSI GKGCMC 3 cut(s) 195, 261, 549
BseXI GCAGC 3 cut(s) 404, 439, 547
BseYI CCCAGC 2 cut(s) 284, 611
BsgI GTGCAG 1 cut(s) 554
Bsh1236I CGCG 5 cut(s) 397, 417, 503, 606, 608
Bsh1285I CGRYCG 1 cut(s) 343
BshFI GGCC 3 cut(s) 77, 147, 374
BshNI GGYRCC 1 cut(s) 104
BshVI ATCGAT 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 343
BsiHKAI GWGCWC 4 cut(s) 8, 195, 510, 549
BsiHKCI CYCGRG 2 cut(s) 509, 539
BsiSI CCGG 2 cut(s) 51, 520
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 699
BsnI GGCC 3 cut(s) 77, 147, 374
BsoBI CYCGRG 2 cut(s) 509, 539
Bsp1286I GDGCHC 5 cut(s) 8, 195, 261, 510, 549
Bsp143I GATC 3 cut(s) 120, 214, 304
Bsp19I CCATGG 1 cut(s) 228
BspANI GGCC 3 cut(s) 77, 147, 374
BspDI ATCGAT 1 cut(s) 178
BspFNI CGCG 5 cut(s) 397, 417, 503, 606, 608
BspLI GGNNCC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 111, 228, 460
BssMI GATC 3 cut(s) 120, 214, 304
BssNI GRCGYC 2 cut(s) 105, 590
BssT1I CCWWGG 1 cut(s) 228
Bst4CI ACNGT 4 cut(s) 197, 244, 313, 344
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 2 cut(s) 105, 590
BstAPI GCANNNNNTGC 2 cut(s) 435, 505
BstBAI YACGTR 2 cut(s) 190, 691
BstC8I GCNNGC 8 cut(s) 61, 85, 445, 501, 529, 533, 658, 718
BstDSI CCRYGG 3 cut(s) 111, 228, 460
BstF5I GGATG 3 cut(s) 129, 703, 766
BstFNI CGCG 5 cut(s) 397, 417, 503, 606, 608
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 6 cut(s) 59, 107, 249, 397, 417, 608
BstKTI GATC 3 cut(s) 123, 217, 307
BstMBI GATC 3 cut(s) 120, 214, 304
BstMCI CGRYCG 1 cut(s) 343
BstMWI GCNNNNNNNGC 9 cut(s) 60, 63, 69, 435, 444, 449, 505, 544, 774
BstNSI RCATGY 2 cut(s) 392, 493
BstSLI GKGCMC 3 cut(s) 195, 261, 549
BstUI CGCG 5 cut(s) 397, 417, 503, 606, 608
BstV1I GCAGC 3 cut(s) 404, 439, 547
BstV2I GAAGAC 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 178
BsuRI GGCC 3 cut(s) 77, 147, 374
BsuTUI ATCGAT 1 cut(s) 178
BtgI CCRYGG 3 cut(s) 111, 228, 460
BtrI CACGTC 2 cut(s) 355, 600
BtsCI GGATG 3 cut(s) 129, 703, 766
BtsIMutI CAGTG 1 cut(s) 193
Cac8I GCNNGC 8 cut(s) 61, 85, 445, 501, 529, 533, 658, 718
CfoI GCGC 6 cut(s) 59, 107, 249, 397, 417, 608
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 3 cut(s) 145, 477, 517
ClaI ATCGAT 1 cut(s) 178
CpoI CGGWCCG 1 cut(s) 477
CseI GACGC 1 cut(s) 598
Csp6I GTAC 1 cut(s) 183
CspI CGGWCCG 1 cut(s) 477
CviAII CATG 8 cut(s) 101, 229, 271, 370, 389, 466, 490, 746
CviQI GTAC 1 cut(s) 183
DinI GGCGCC 1 cut(s) 106
DpnI GATC 3 cut(s) 122, 216, 306
DpnII GATC 3 cut(s) 120, 214, 304
DraIII CACNNNGTG 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 710
Eco130I CCWWGG 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 477, 517
Eco72I CACGTG 1 cut(s) 691
Eco88I CYCGRG 2 cut(s) 509, 539
EcoT14I CCWWGG 1 cut(s) 228
EgeI GGCGCC 1 cut(s) 106
EheI GGCGCC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 8 cut(s) 104, 232, 274, 373, 392, 469, 493, 749
FaqI GGGAC 1 cut(s) 699
FatI CATG 8 cut(s) 100, 228, 270, 369, 388, 465, 489, 745
FauI CCCGC 2 cut(s) 92, 676
Fnu4HI GCNGC 8 cut(s) 55, 64, 108, 393, 453, 536, 604, 609
FokI GGATG 3 cut(s) 116, 710, 773
Fsp4HI GCNGC 8 cut(s) 55, 64, 108, 393, 453, 536, 604, 609
FspI TGCGCA 1 cut(s) 248
GlaI GCGC 6 cut(s) 58, 106, 248, 396, 416, 607
GluI GCNGC 8 cut(s) 55, 64, 108, 393, 453, 536, 604, 609
GsaI CCCAGC 2 cut(s) 288, 615
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 3 cut(s) 77, 147, 374
HapII CCGG 2 cut(s) 51, 520
HgaI GACGC 1 cut(s) 598
HhaI GCGC 6 cut(s) 59, 107, 249, 397, 417, 608
Hin1I GRCGYC 2 cut(s) 105, 590
Hin1II CATG 8 cut(s) 104, 232, 274, 373, 392, 469, 493, 749
Hin6I GCGC 6 cut(s) 57, 105, 247, 395, 415, 606
HinP1I GCGC 6 cut(s) 57, 105, 247, 395, 415, 606
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 3 cut(s) 161, 472, 725
HpaII CCGG 2 cut(s) 51, 520
HphI GGTGA 2 cut(s) 130, 734
Hpy166II GTNNAC 4 cut(s) 193, 358, 547, 597
Hpy188I TCNGA 4 cut(s) 208, 309, 477, 730
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 4 cut(s) 193, 358, 547, 597
Hpy99I CGWCG 2 cut(s) 356, 592
HpyAV CCTTC 3 cut(s) 346, 610, 631
HpyCH4III ACNGT 4 cut(s) 197, 244, 313, 344
HpyCH4IV ACGT 5 cut(s) 189, 354, 360, 599, 690
HpyCH4V TGCA 7 cut(s) 28, 193, 392, 438, 489, 535, 547
HpyF10VI GCNNNNNNNGC 9 cut(s) 60, 63, 69, 435, 444, 449, 505, 544, 774
HpySE526I ACGT 5 cut(s) 189, 354, 360, 599, 690
Hsp92I GRCGYC 2 cut(s) 105, 590
Hsp92II CATG 8 cut(s) 104, 232, 274, 373, 392, 469, 493, 749
HspAI GCGC 6 cut(s) 57, 105, 247, 395, 415, 606
KasI GGCGCC 1 cut(s) 104
Kzo9I GATC 3 cut(s) 120, 214, 304
LpnPI CCDG 6 cut(s) 64, 137, 270, 533, 597, 726
Lsp1109I GCAGC 3 cut(s) 404, 439, 547
LweI GCATC 2 cut(s) 75, 688
MaeII ACGT 5 cut(s) 189, 354, 360, 599, 690
MaeIII GTNAC 1 cut(s) 736
MalI GATC 3 cut(s) 122, 216, 306
MboI GATC 3 cut(s) 120, 214, 304
MboII GAAGA 3 cut(s) 82, 224, 235
MhlI GDGCHC 5 cut(s) 8, 195, 261, 510, 549
MluCI AATT 3 cut(s) 23, 140, 562
Mly113I GGCGCC 1 cut(s) 105
MlyI GAGTC 1 cut(s) 734
MmeI TCCRAC 1 cut(s) 708
MnlI CCTC 5 cut(s) 6, 67, 98, 405, 619
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 2 cut(s) 178, 198
MspI CCGG 2 cut(s) 51, 520
MvnI CGCG 5 cut(s) 397, 417, 503, 606, 608
MwoI GCNNNNNNNGC 9 cut(s) 60, 63, 69, 435, 444, 449, 505, 544, 774
NarI GGCGCC 1 cut(s) 105
NcoI CCATGG 1 cut(s) 228
NdeII GATC 3 cut(s) 120, 214, 304
NlaIII CATG 8 cut(s) 104, 232, 274, 373, 392, 469, 493, 749
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 736
NsbI TGCGCA 1 cut(s) 248
NspI RCATGY 2 cut(s) 392, 493
PcsI WCGNNNNNNNCGW 3 cut(s) 357, 578, 596
PfeI GAWTC 2 cut(s) 161, 472
PflFI GACNNNGTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 8 cut(s) 56, 65, 109, 394, 454, 537, 605, 610
PleI GAGTC 1 cut(s) 733
PluTI GGCGCC 1 cut(s) 108
PmaCI CACGTG 1 cut(s) 691
PmlI CACGTG 1 cut(s) 691
PpsI GAGTC 1 cut(s) 733
Ppu21I YACGTR 2 cut(s) 190, 691
PspCI CACGTG 1 cut(s) 691
PspFI CCCAGC 2 cut(s) 284, 611
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 3 cut(s) 145, 477, 517
PsrI GAACNNNNNNTAC 2 cut(s) 635, 667
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 178, 198
Rsr2I CGGWCCG 1 cut(s) 477
RsrII CGGWCCG 1 cut(s) 477
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 8 cut(s) 55, 64, 108, 393, 453, 536, 604, 609
Sau3AI GATC 3 cut(s) 120, 214, 304
Sau96I GGNCC 3 cut(s) 145, 477, 517
SchI GAGTC 1 cut(s) 734
SduI GDGCHC 5 cut(s) 8, 195, 261, 510, 549
SetI ASST 9 cut(s) 156, 188, 192, 324, 357, 363, 540, 602, 693
SfaNI GCATC 2 cut(s) 75, 688
SfoI GGCGCC 1 cut(s) 106
SinI GGWCC 2 cut(s) 477, 517
SmiMI CAYNNNNRTG 2 cut(s) 178, 198
Sse9I AATT 3 cut(s) 23, 140, 562
SspDI GGCGCC 1 cut(s) 104
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 4 cut(s) 197, 244, 313, 344
TaiI ACGT 5 cut(s) 192, 357, 363, 602, 693
TaqI TCGA 4 cut(s) 178, 339, 351, 494
TaqII GACCGA 1 cut(s) 494
TasI AATT 3 cut(s) 23, 140, 562
TauI GCSGC 5 cut(s) 57, 66, 110, 606, 611
TfiI GAWTC 2 cut(s) 161, 472
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 3 cut(s) 392, 452, 535
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 2 cut(s) 153, 225
TspRI CASTG 1 cut(s) 200
Tth111I GACNNNGTC 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 466
VneI GTGCAC 2 cut(s) 191, 545
VpaK11BI GGWCC 2 cut(s) 477, 517
XceI RCATGY 2 cut(s) 392, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.