pycom06g16640

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000222
Physical Location & Seq
Forward (+)
20844109 .. 20844888
780 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16640.1

Sequence Viewer

Length: 780 bp
ATGAGCACACTGCGCAACAAATTACAAGGGAGAGTAGCAATAATCACCGGCGGAGCAAGCGGCATCGGTGAGGCGACGGCACGCCTGTTTGCCGATCATGGTGCCATCATGGTGATGATCGCCGACATCCAAGATGAGCTAGGCCGTCAAGTAGCCGAATCTATTGGTACACATAGATGCAGCTATGTGCACTGTGACGTATCCGATGAAGAACAAGTGAAGACCATGGTGGAAACTACAGTGCACAAATACGGGCAGCTAGATATCATGTTTAGCAACGCTGGTATTGTTAGTAGATCAGATCAGACCGTTCTTGACCTTGATTTTTCAGCTTTTGACCGTTTGTTCGATGTGAACGTCCGTGGTATGGCCTTGTGTGTCAAACATGCAGCGCGTGTCATGGTAGAACGGAGCGTGAGGGGGAGCATAGTGTGCACGGCAAGTGTGGCGGCGAACCACGGCATGGAGATTAGGACGGACTACTGCATGTCGAAGCACGCGGTACTGGGGTTGGTTCGGTCGGCCAGCCGGCAGCTTGGGGTGCACGGCATCAGGGTGAACTGCGTCTCGCCGAACGCATTGGCCACCCAGTTAACGTGCCGTGCGCGTGGGATGGAAATGGGAGAAGTCCAGAAGTCGTATGAGAAGTTCGCATGCTTGAAAGGGGTTGTGCTGACGCCGAGGCACGTGGCGGATGCGGTGCTGTTTCTAGCTTGTGATGATTCTGAGTTTGTCACCGGACATGACATGGTGGTGGACGGTGGCTTTGTTCGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

260

Amino Acids

28.11

Weight (kDa)

6.54

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 200 1.8e-47 short chain dehydrogenase
KR PF08659 14 - 186 2.9e-12 KR domain
adh_short_C2 PF13561 19 - 256 5.4e-63 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 463
AccII CGCG 3 cut(s) 394, 500, 607
AciI CCGC 6 cut(s) 51, 60, 449, 500, 692, 698
AcoI YGGCCR 2 cut(s) 522, 582
AcvI CACGTG 1 cut(s) 688
AcyI GRCGYC 1 cut(s) 677
AfaI GTAC 2 cut(s) 169, 504
AfiI CCNNNNNNNGG 2 cut(s) 367, 463
AgsI TTSAA 1 cut(s) 661
AluBI AGCT 6 cut(s) 139, 183, 259, 332, 535, 713
AluI AGCT 6 cut(s) 139, 183, 259, 332, 535, 713
Alw21I GWGCWC 5 cut(s) 8, 192, 246, 437, 546
Alw26I GTCTC 1 cut(s) 571
Alw44I GTGCAC 4 cut(s) 188, 242, 433, 542
AoxI GGCC 4 cut(s) 142, 369, 522, 582
ApaLI GTGCAC 4 cut(s) 188, 242, 433, 542
ApeKI GCWGC 4 cut(s) 180, 256, 389, 532
ArsI GACNNNNNNTTYG 3 cut(s) 329, 361, 749
AspLEI GCGC 3 cut(s) 15, 394, 607
AsuHPI GGTGA 5 cut(s) 37, 80, 124, 568, 727
BaeGI GKGCMC 4 cut(s) 192, 246, 437, 546
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BalI TGGCCA 1 cut(s) 584
BanI GGYRCC 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 5 cut(s) 8, 192, 246, 437, 546
BbvI GCAGC 4 cut(s) 192, 268, 401, 544
BccI CCATC 2 cut(s) 113, 607
BceAI ACGGC 6 cut(s) 93, 129, 453, 475, 562, 585
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciVI GTATCC 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 3 cut(s) 140, 260, 710
BfmI CTRYAG 1 cut(s) 237
BfuI GTATCC 1 cut(s) 211
BisI GCNGC 6 cut(s) 61, 181, 257, 390, 450, 533
BlsI GCNGC 6 cut(s) 62, 182, 258, 391, 451, 534
BmiI GGNNCC 1 cut(s) 103
BmrI ACTGGG 2 cut(s) 515, 583
BmsI GCATC 4 cut(s) 72, 167, 558, 685
BmuI ACTGGG 2 cut(s) 515, 583
BpiI GAAGAC 1 cut(s) 227
BsaAI YACGTR 1 cut(s) 688
BsaHI GRCGYC 1 cut(s) 677
BsaJI CCNNGG 4 cut(s) 225, 361, 457, 680
BsaWI WCCGGW 1 cut(s) 737
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 463
Bse118I RCCGGY 2 cut(s) 47, 528
Bse1I ACTGG 2 cut(s) 510, 589
BseDI CCNNGG 4 cut(s) 225, 361, 457, 680
BseGI GGATG 3 cut(s) 126, 618, 700
BseLI CCNNNNNNNGG 2 cut(s) 367, 463
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 2 cut(s) 510, 589
BseSI GKGCMC 4 cut(s) 192, 246, 437, 546
BseXI GCAGC 4 cut(s) 192, 268, 401, 544
Bsh1236I CGCG 3 cut(s) 394, 500, 607
Bsh1285I CGRYCG 1 cut(s) 521
BshFI GGCC 4 cut(s) 144, 371, 524, 584
BshNI GGYRCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 521
BsiHKAI GWGCWC 5 cut(s) 8, 192, 246, 437, 546
BsiSI CCGG 3 cut(s) 48, 529, 738
BslI CCNNNNNNNGG 2 cut(s) 367, 463
BsmAI GTCTC 1 cut(s) 571
BsmBI CGTCTC 1 cut(s) 571
BsnI GGCC 4 cut(s) 144, 371, 524, 584
Bsp1286I GDGCHC 5 cut(s) 8, 192, 246, 437, 546
Bsp143I GATC 4 cut(s) 94, 117, 296, 301
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 6 cut(s) 51, 60, 449, 500, 692, 698
BspANI GGCC 4 cut(s) 144, 371, 524, 584
BspCNI CTCAG 1 cut(s) 718
BspFNI CGCG 3 cut(s) 394, 500, 607
BspLI GGNNCC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 47, 528
BsrI ACTGG 2 cut(s) 510, 589
BssAI RCCGGY 2 cut(s) 47, 528
BssECI CCNNGG 4 cut(s) 225, 361, 457, 680
BssMI GATC 4 cut(s) 94, 117, 296, 301
BssNI GRCGYC 1 cut(s) 677
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 5 cut(s) 194, 241, 310, 341, 761
BstACI GRCGYC 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 432
BstBAI YACGTR 1 cut(s) 688
BstC8I GCNNGC 6 cut(s) 58, 82, 498, 526, 530, 655
BstDEI CTNAG 1 cut(s) 726
BstDSI CCRYGG 3 cut(s) 225, 361, 457
BstF5I GGATG 3 cut(s) 126, 618, 700
BstFNI CGCG 3 cut(s) 394, 500, 607
BstHHI GCGC 3 cut(s) 15, 394, 607
BstKTI GATC 4 cut(s) 97, 120, 299, 304
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 4 cut(s) 94, 117, 296, 301
BstMCI CGRYCG 1 cut(s) 521
BstMWI GCNNNNNNNGC 6 cut(s) 12, 57, 432, 446, 541, 771
BstNSI RCATGY 3 cut(s) 389, 490, 657
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 4 cut(s) 192, 246, 437, 546
BstUI CGCG 3 cut(s) 394, 500, 607
BstV1I GCAGC 4 cut(s) 192, 268, 401, 544
BstV2I GAAGAC 1 cut(s) 227
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 4 cut(s) 144, 371, 524, 584
BtgI CCRYGG 3 cut(s) 225, 361, 457
BtsCI GGATG 3 cut(s) 126, 618, 700
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 3 cut(s) 8, 190, 246
Cac8I GCNNGC 6 cut(s) 58, 82, 498, 526, 530, 655
CfoI GCGC 3 cut(s) 15, 394, 607
Cfr10I RCCGGY 2 cut(s) 47, 528
CseI GACGC 2 cut(s) 553, 685
Csp6I GTAC 2 cut(s) 168, 503
CviQI GTAC 2 cut(s) 168, 503
DdeI CTNAG 1 cut(s) 726
DpnI GATC 4 cut(s) 96, 119, 298, 303
DpnII GATC 4 cut(s) 94, 117, 296, 301
EaeI YGGCCR 2 cut(s) 522, 582
EciI GGCGGA 2 cut(s) 66, 707
Eco130I CCWWGG 1 cut(s) 225
Eco32I GATATC 1 cut(s) 265
Eco72I CACGTG 1 cut(s) 688
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 571
Fnu4HI GCNGC 6 cut(s) 61, 181, 257, 390, 450, 533
FokI GGATG 3 cut(s) 113, 625, 707
Fsp4HI GCNGC 6 cut(s) 61, 181, 257, 390, 450, 533
FspBI CTAG 3 cut(s) 140, 260, 710
FspI TGCGCA 1 cut(s) 14
GlaI GCGC 3 cut(s) 14, 393, 606
GluI GCNGC 6 cut(s) 61, 181, 257, 390, 450, 533
HaeIII GGCC 4 cut(s) 144, 371, 524, 584
HapII CCGG 3 cut(s) 48, 529, 738
HgaI GACGC 2 cut(s) 553, 685
HhaI GCGC 3 cut(s) 15, 394, 607
Hin1I GRCGYC 1 cut(s) 677
Hin6I GCGC 3 cut(s) 13, 392, 605
HinP1I GCGC 3 cut(s) 13, 392, 605
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HinfI GANTC 2 cut(s) 158, 722
HpaI GTTAAC 1 cut(s) 594
HpaII CCGG 3 cut(s) 48, 529, 738
HphI GGTGA 5 cut(s) 37, 80, 124, 568, 727
Hpy166II GTNNAC 9 cut(s) 170, 190, 244, 355, 435, 544, 559, 594, 757
Hpy188I TCNGA 4 cut(s) 205, 301, 306, 727
Hpy188III TCNNGA 2 cut(s) 314, 631
Hpy8I GTNNAC 9 cut(s) 170, 190, 244, 355, 435, 544, 559, 594, 757
Hpy99I CGWCG 1 cut(s) 79
HpyCH4III ACNGT 5 cut(s) 194, 241, 310, 341, 761
HpyCH4IV ACGT 4 cut(s) 198, 357, 596, 687
HpyCH4V TGCA 7 cut(s) 180, 190, 244, 389, 435, 486, 544
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 57, 432, 446, 541, 771
HpyF3I CTNAG 1 cut(s) 726
HpySE526I ACGT 4 cut(s) 198, 357, 596, 687
Hsp92I GRCGYC 1 cut(s) 677
HspAI GCGC 3 cut(s) 13, 392, 605
KroI GCCGGC 1 cut(s) 528
KroNI GCCGGC 1 cut(s) 530
KspAI GTTAAC 1 cut(s) 594
Kzo9I GATC 4 cut(s) 94, 117, 296, 301
LmnI GCTCC 3 cut(s) 53, 411, 423
Lsp1109I GCAGC 4 cut(s) 192, 268, 401, 544
LweI GCATC 4 cut(s) 72, 167, 558, 685
MaeI CTAG 3 cut(s) 140, 260, 710
MaeII ACGT 4 cut(s) 198, 357, 596, 687
MaeIII GTNAC 2 cut(s) 194, 733
MalI GATC 4 cut(s) 96, 119, 298, 303
MboI GATC 4 cut(s) 94, 117, 296, 301
MboII GAAGA 2 cut(s) 221, 232
MhlI GDGCHC 5 cut(s) 8, 192, 246, 437, 546
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 1 cut(s) 20
MluNI TGGCCA 1 cut(s) 584
MnlI CCTC 3 cut(s) 64, 411, 675
Mox20I TGGCCA 1 cut(s) 584
MroNI GCCGGC 1 cut(s) 528
MscI TGGCCA 1 cut(s) 584
MseI TTAA 1 cut(s) 593
MslI CAYNNNNRTG 5 cut(s) 110, 113, 175, 554, 752
Msp20I TGGCCA 1 cut(s) 584
MspI CCGG 3 cut(s) 48, 529, 738
MvnI CGCG 3 cut(s) 394, 500, 607
MwoI GCNNNNNNNGC 6 cut(s) 12, 57, 432, 446, 541, 771
NaeI GCCGGC 1 cut(s) 530
NcoI CCATGG 1 cut(s) 225
NdeII GATC 4 cut(s) 94, 117, 296, 301
NgoMIV GCCGGC 1 cut(s) 528
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 705
NmuCI GTSAC 2 cut(s) 194, 733
NsbI TGCGCA 1 cut(s) 14
NspI RCATGY 3 cut(s) 389, 490, 657
PaeI GCATGC 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PdiI GCCGGC 1 cut(s) 530
PfeI GAWTC 2 cut(s) 158, 722
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 6 cut(s) 62, 182, 258, 391, 451, 534
PmaCI CACGTG 1 cut(s) 688
PmlI CACGTG 1 cut(s) 688
Ppu21I YACGTR 1 cut(s) 688
PspCI CACGTG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 103
PsrI GAACNNNNNNTAC 2 cut(s) 632, 664
RsaI GTAC 2 cut(s) 169, 504
RsaNI GTAC 2 cut(s) 168, 503
RseI CAYNNNNRTG 5 cut(s) 110, 113, 175, 554, 752
SaqAI TTAA 1 cut(s) 593
SatI GCNGC 6 cut(s) 61, 181, 257, 390, 450, 533
Sau3AI GATC 4 cut(s) 94, 117, 296, 301
SduI GDGCHC 5 cut(s) 8, 192, 246, 437, 546
SfaNI GCATC 4 cut(s) 72, 167, 558, 685
SfcI CTRYAG 1 cut(s) 237
SgrAI CRCCGGYG 1 cut(s) 47
SmiMI CAYNNNNRTG 5 cut(s) 110, 113, 175, 554, 752
SphI GCATGC 1 cut(s) 657
Sse9I AATT 1 cut(s) 20
SsiI CCGC 6 cut(s) 51, 60, 449, 500, 692, 698
SspMI CTAG 3 cut(s) 140, 260, 710
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 5 cut(s) 194, 241, 310, 341, 761
TaiI ACGT 4 cut(s) 201, 360, 599, 690
TaqI TCGA 2 cut(s) 348, 491
TaqII GACCGA 1 cut(s) 507
TasI AATT 1 cut(s) 20
TauI GCSGC 2 cut(s) 63, 452
TfiI GAWTC 2 cut(s) 158, 722
Tru1I TTAA 1 cut(s) 593
Tru9I TTAA 1 cut(s) 593
TscAI CASTG 3 cut(s) 15, 197, 246
TseFI GTSAC 2 cut(s) 194, 733
TseI GCWGC 4 cut(s) 180, 256, 389, 532
Tsp45I GTSAC 2 cut(s) 194, 733
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 3 cut(s) 350, 424, 491
TspRI CASTG 3 cut(s) 15, 197, 246
Van91I CCANNNNNTGG 1 cut(s) 463
VneI GTGCAC 4 cut(s) 188, 242, 433, 542
XceI RCATGY 3 cut(s) 389, 490, 657
XspI CTAG 3 cut(s) 140, 260, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.