Rh7AG469600

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000222
Physical Location & Seq
Reverse (-)
65066017 .. 65066334
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG469600.1

Sequence Viewer

Length: 318 bp
ATGTCGAAGCACGCAGTGCTGGGGCTGGTGCGGTCGGCAAGAGTGAAGCTGGCAGCTCGTGGGGTGCGCGTGAACTGCGTGTCGCCGGGTTTGGTGGGGACGCCGCTGTTGAGTGAGACTTTTAAGCTTGGGGAGGAAGAGCTGAAGGAGCTGATGACATCGGTTTATTCAGAAAGTAACGATGGGCCGCTGATGGAGAAACACGTGGCGGATGCGGTGGTGTTTTTGCTGTCGGAGGACTTGGCGTTCGTCACCAGCCATAATTTGGTGGTTGATGGGGGATTTGGCACCAAGTCCTTATCAGTACTCAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

105

Amino Acids

11.2

Weight (kDa)

6.27

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 95 1.2e-18 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 2 - 40 1.7e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 1 cut(s) 69
AciI CCGC 5 cut(s) 31, 104, 188, 209, 215
AcuI CTGAAG 1 cut(s) 164
AcvI CACGTG 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 16
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 202
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 5 cut(s) 49, 56, 127, 142, 151
AluI AGCT 5 cut(s) 49, 56, 127, 142, 151
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 244
BanI GGYRCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 57
BbrPI CACGTG 1 cut(s) 205
BbvI GCAGC 1 cut(s) 65
BccI CCATC 3 cut(s) 176, 187, 269
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 110
BisI GCNGC 3 cut(s) 54, 104, 188
BlsI GCNGC 3 cut(s) 55, 105, 189
BmcAI AGTACT 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 69
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 287
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 187
BspACI CCGC 5 cut(s) 31, 104, 188, 209, 215
BspANI GGCC 1 cut(s) 187
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 287
BssNI GRCGYC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 16
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 12, 51
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 110
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 16, 75, 148
BstSCI CCNGG 1 cut(s) 85
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 12, 51
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 305
CviJI RGCY 8 cut(s) 25, 49, 56, 127, 142, 151, 187, 258
CviKI_1 RGCY 8 cut(s) 25, 49, 56, 127, 142, 151, 187, 258
CviQI GTAC 1 cut(s) 305
DraIII CACNNNGTG 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
EciI GGCGGA 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 164
Eco72I CACGTG 1 cut(s) 205
FaiI YATR 2 cut(s) 261, 316
FaqI GGGAC 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 54, 104, 188
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 54, 104, 188
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 54, 104, 188
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 125
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 172, 235
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 75, 148
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 101
HspAI GCGC 1 cut(s) 67
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 5, 11, 35, 99, 268
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 1 cut(s) 202
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 176, 250
MboII GAAGA 1 cut(s) 149
MluCI AATT 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 2 cut(s) 127, 229
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 2 cut(s) 106, 190
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 16, 75, 148
NciI CCSGG 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 3 cut(s) 55, 105, 189
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 205
PspCI CACGTG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 54, 104, 188
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 87
SetI ASST 6 cut(s) 51, 58, 129, 144, 153, 207
SfaNI GCATC 1 cut(s) 202
Sse9I AATT 1 cut(s) 262
SsiI CCGC 5 cut(s) 31, 104, 188, 209, 215
StyD4I CCNGG 1 cut(s) 85
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 304
TauI GCSGC 2 cut(s) 106, 190
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 250
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
ZrmI AGTACT 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.