Rh7BG439000

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000222
Physical Location & Seq
Forward (+)
50535167 .. 50535979
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG439000.1

Sequence Viewer

Length: 813 bp
ATGACACAGCCCATACCATTACCACTGCAGAAGCTCCACGGCAAGGTGGCCATCGTCACCGGCGCCGCCAGCGGTATCGGAGCAGTCACGGCGCGTCACTTTGCAGACCACGGCGCTCTCGCCGTCGTGATCGCTGACGTCCAAGACTCCAAGGGCCGAGAAGTGGCTGCATCCATCGGCTCCCACCGCTGCACCTACGTCCACTGCGACGTCACCAACGAGGATCAGGTCAAGTCCCTGGTCGAGTTCACGGTCAAGCACTACGGCAGCCTCGACGTCATGTACAGCAACGTGGGGATAACCAGCGCGTCGGCGCAGACGGTGCTGGAGCTCGACCTGTCCGGGTACGACAGGGTGATGGCGGTGAACGCGCGCGGGATGGCGGCGTGTGTGAAGCACGCGGCGCGTGCGATGGTGGAGAAGGGGGTGAAGGGGAGCATAGTGTGCGCGACGAGCTTCTCGGCGGCCTGCGGGACTGCGAGCTTGACGGACTACACGATGTCGAAGCACGCGGTGCTGGGGCTGGTGAGGTCGGCGAGCGTGCAGCTGGCGCCGCGTGGTGTGCGCGTGAACTGTGTGTCGCCGGGCTTGGTGGCGACGCCGATGGTGTGCGACGCATTGAAGATTAGTGCGGAAGAGCTGCAGGAGAAAATGGCGGCGATTTATTCGGGAAGGGATGAACCGCTGATGGAGAAAAACGTGGCGGATGCGGTGGTGTTTTTGGCTTGTGAGGACTCGGCGTTCGTCACCGGCCATAATTTGGTGGTTGATGGTGGACTCGGCACCAAGTCCATAGCAGTATTGGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

270

Amino Acids

28.15

Weight (kDa)

6.3

Isoelectric Point (pI)

26.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 203 1.2e-45 short chain dehydrogenase
KR PF08659 18 - 178 6.7e-08 KR domain
adh_short_C2 PF13561 21 - 260 4.6e-59 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 141, 213, 279
AccB1I GGYRCC 3 cut(s) 62, 550, 782
AccB7I CCANNNNNTGG 1 cut(s) 760
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 48, 751
AcyI GRCGYC 6 cut(s) 63, 138, 210, 276, 551, 599
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 2 cut(s) 284, 347
AfiI CCNNNNNNNGG 3 cut(s) 43, 163, 760
AgsI TTSAA 1 cut(s) 622
AjnI CCWGG 1 cut(s) 237
AloI GAACNNNNNNTCC 2 cut(s) 725, 757
AluBI AGCT 6 cut(s) 34, 331, 456, 483, 547, 640
AluI AGCT 6 cut(s) 34, 331, 456, 483, 547, 640
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 1 cut(s) 231
AoxI GGCC 4 cut(s) 48, 154, 465, 751
ApeKI GCWGC 5 cut(s) 167, 189, 267, 544, 640
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 2 cut(s) 343, 585
AsuHPI GGTGA 7 cut(s) 49, 205, 367, 376, 439, 538, 739
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 3 cut(s) 62, 550, 782
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 5 cut(s) 154, 176, 279, 556, 627
BccI CCATC 8 cut(s) 59, 182, 352, 373, 406, 598, 682, 764
BceAI ACGGC 5 cut(s) 55, 105, 107, 127, 280
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 2 cut(s) 343, 585
BfmI CTRYAG 2 cut(s) 26, 641
BfoI RGCGCY 3 cut(s) 66, 117, 554
Bme1390I CCNGG 3 cut(s) 239, 343, 585
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 4 cut(s) 64, 181, 552, 784
BmrFI CCNGG 3 cut(s) 239, 343, 585
BmsI GCATC 2 cut(s) 179, 697
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 343, 585
BsaHI GRCGYC 6 cut(s) 63, 138, 210, 276, 551, 599
BsaJI CCNNGG 4 cut(s) 37, 109, 150, 237
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 163, 760
Bse118I RCCGGY 2 cut(s) 59, 749
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 4 cut(s) 37, 109, 150, 237
BseGI GGATG 4 cut(s) 170, 384, 682, 712
BseLI CCNNNNNNNGG 3 cut(s) 43, 163, 760
BsePI GCGCGC 1 cut(s) 371
BseXI GCAGC 5 cut(s) 154, 176, 279, 556, 627
BseYI CCCAGC 1 cut(s) 517
BsgI GTGCAG 2 cut(s) 175, 563
BshFI GGCC 4 cut(s) 50, 156, 467, 753
BshNI GGYRCC 3 cut(s) 62, 550, 782
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 4 cut(s) 60, 342, 584, 750
BslFI GGGAC 2 cut(s) 220, 487
BslI CCNNNNNNNGG 3 cut(s) 43, 163, 760
BsmFI GGGAC 2 cut(s) 220, 487
BsnI GGCC 4 cut(s) 50, 156, 467, 753
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 129, 223
BspANI GGCC 4 cut(s) 50, 156, 467, 753
BspLI GGNNCC 4 cut(s) 64, 181, 552, 784
BspMAI CTGCAG 2 cut(s) 30, 645
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 630
BspT107I GGYRCC 3 cut(s) 62, 550, 782
BsrFI RCCGGY 2 cut(s) 59, 749
BsrGI TGTACA 1 cut(s) 282
BssAI RCCGGY 2 cut(s) 59, 749
BssECI CCNNGG 4 cut(s) 37, 109, 150, 237
BssHII GCGCGC 1 cut(s) 371
BssMI GATC 2 cut(s) 129, 223
BssNI GRCGYC 6 cut(s) 63, 138, 210, 276, 551, 599
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 253, 322, 575
Bst6I CTCTTC 1 cut(s) 630
BstACI GRCGYC 6 cut(s) 63, 138, 210, 276, 551, 599
BstAPI GCANNNNNTGC 3 cut(s) 322, 444, 514
BstAUI TGTACA 1 cut(s) 282
BstDSI CCRYGG 2 cut(s) 37, 109
BstF5I GGATG 4 cut(s) 170, 384, 682, 712
BstH2I RGCGCY 3 cut(s) 66, 117, 554
BstKTI GATC 2 cut(s) 132, 226
BstMBI GATC 2 cut(s) 129, 223
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 237, 341, 583
BstSFI CTRYAG 2 cut(s) 26, 641
BstV1I GCAGC 5 cut(s) 154, 176, 279, 556, 627
BsuRI GGCC 4 cut(s) 50, 156, 467, 753
BtgI CCRYGG 2 cut(s) 37, 109
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 4 cut(s) 170, 384, 682, 712
BtsI GCAGTG 2 cut(s) 23, 202
BtsIMutI CAGTG 2 cut(s) 23, 202
Cfr10I RCCGGY 2 cut(s) 59, 749
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 4 cut(s) 83, 297, 607, 623
Csp6I GTAC 2 cut(s) 283, 346
CviAII CATG 1 cut(s) 280
CviQI GTAC 2 cut(s) 283, 346
DinI GGCGCC 2 cut(s) 64, 552
DpnI GATC 2 cut(s) 131, 225
DpnII GATC 2 cut(s) 129, 223
DraIII CACNNNGTG 1 cut(s) 514
EaeI YGGCCR 2 cut(s) 48, 751
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 1 cut(s) 719
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 333
EgeI GGCGCC 2 cut(s) 64, 552
EheI GGCGCC 2 cut(s) 64, 552
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 283
FaiI YATR 5 cut(s) 14, 281, 440, 756, 794
FaqI GGGAC 2 cut(s) 220, 487
FatI CATG 1 cut(s) 279
FauI CCCGC 2 cut(s) 368, 464
FokI GGATG 4 cut(s) 157, 391, 689, 719
FriOI GRGCYC 1 cut(s) 333
GsaI CCCAGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 3 cut(s) 66, 117, 554
HaeIII GGCC 4 cut(s) 50, 156, 467, 753
HapII CCGG 4 cut(s) 60, 342, 584, 750
HgaI GACGC 4 cut(s) 83, 297, 607, 623
Hin1I GRCGYC 6 cut(s) 63, 138, 210, 276, 551, 599
Hin1II CATG 1 cut(s) 283
HinfI GANTC 3 cut(s) 146, 734, 777
HpaII CCGG 4 cut(s) 60, 342, 584, 750
HphI GGTGA 7 cut(s) 49, 205, 367, 376, 439, 538, 739
Hpy166II GTNNAC 5 cut(s) 202, 249, 367, 571, 776
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 127, 669
Hpy8I GTNNAC 5 cut(s) 202, 249, 367, 571, 776
Hpy99I CGWCG 7 cut(s) 128, 212, 278, 313, 454, 601, 617
HpyAV CCTTC 3 cut(s) 415, 424, 666
HpyCH4III ACNGT 3 cut(s) 253, 322, 575
HpyCH4IV ACGT 6 cut(s) 138, 198, 210, 276, 291, 699
HpyCH4V TGCA 6 cut(s) 28, 104, 170, 192, 544, 643
HpySE526I ACGT 6 cut(s) 138, 198, 210, 276, 291, 699
Hsp92I GRCGYC 6 cut(s) 63, 138, 210, 276, 551, 599
Hsp92II CATG 1 cut(s) 283
KasI GGCGCC 2 cut(s) 62, 550
Kzo9I GATC 2 cut(s) 129, 223
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 5 cut(s) 39, 80, 185, 328, 435
Lsp1109I GCAGC 5 cut(s) 154, 176, 279, 556, 627
LweI GCATC 2 cut(s) 179, 697
MaeII ACGT 6 cut(s) 138, 198, 210, 276, 291, 699
MaeIII GTNAC 5 cut(s) 55, 85, 95, 211, 745
MalI GATC 2 cut(s) 131, 225
MauBI CGCGCGCG 1 cut(s) 371
MboI GATC 2 cut(s) 129, 223
MboII GAAGA 2 cut(s) 634, 647
MhlI GDGCHC 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 1 cut(s) 757
MluNI TGGCCA 1 cut(s) 50
Mly113I GGCGCC 2 cut(s) 63, 551
MlyI GAGTC 3 cut(s) 140, 728, 771
MnlI CCTC 4 cut(s) 214, 281, 522, 724
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 4 cut(s) 72, 189, 547, 685
MspI CCGG 4 cut(s) 60, 342, 584, 750
MspR9I CCNGG 3 cut(s) 239, 343, 585
MvaI CCWGG 1 cut(s) 239
NarI GGCGCC 2 cut(s) 63, 551
NciI CCSGG 2 cut(s) 343, 585
NdeII GATC 2 cut(s) 129, 223
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 4 cut(s) 64, 181, 552, 784
NmeAIII GCCGAG 4 cut(s) 182, 440, 716, 759
NmuCI GTSAC 5 cut(s) 55, 85, 95, 211, 745
PauI GCGCGC 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 4 cut(s) 204, 216, 270, 494
PflMI CCANNNNNTGG 1 cut(s) 760
PleI GAGTC 3 cut(s) 140, 728, 771
PluTI GGCGCC 2 cut(s) 66, 554
PpsI GAGTC 3 cut(s) 140, 728, 771
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 517
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 4 cut(s) 64, 181, 552, 784
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 2 cut(s) 30, 645
PteI GCGCGC 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 2 cut(s) 284, 347
RsaNI GTAC 2 cut(s) 283, 346
SacI GAGCTC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 630
Sau3AI GATC 2 cut(s) 129, 223
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 3 cut(s) 140, 728, 771
ScrFI CCNGG 3 cut(s) 239, 343, 585
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 2 cut(s) 179, 697
SfcI CTRYAG 2 cut(s) 26, 641
SfoI GGCGCC 2 cut(s) 64, 552
SgrAI CRCCGGYG 1 cut(s) 59
Sse9I AATT 1 cut(s) 757
SspDI GGCGCC 2 cut(s) 62, 550
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 3 cut(s) 237, 341, 583
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 253, 322, 575
TaiI ACGT 6 cut(s) 141, 201, 213, 279, 294, 702
TaqI TCGA 4 cut(s) 243, 273, 333, 503
TasI AATT 1 cut(s) 757
TatI WGTACW 1 cut(s) 282
TauI GCSGC 6 cut(s) 68, 386, 404, 467, 556, 659
TscAI CASTG 2 cut(s) 30, 209
TseFI GTSAC 5 cut(s) 55, 85, 95, 211, 745
TseI GCWGC 5 cut(s) 167, 189, 267, 544, 640
Tsp45I GTSAC 5 cut(s) 55, 85, 95, 211, 745
TspDTI ATGAA 1 cut(s) 693
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 30, 209
Van91I CCANNNNNTGG 1 cut(s) 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
ZraI GACGTC 3 cut(s) 139, 211, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.