Rh7AG470100

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000222
Physical Location & Seq
Forward (+)
65097687 .. 65098118
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG470100.1

Sequence Viewer

Length: 432 bp
ATGGCGGCGTGTGTGAAGCACGCGGCTCGCGCGATGGTAGAGAAGGGAGTTAGAGGCAGCATAGTGTGCACCGCGAGCGTTCAGGCGGATTGCGGGACGGAGAGCATGACGGACTACACGATGTCGAAGCACGCAATGCTGATGAGGTCGGCGAGCGTGCAGCTGGTGAAGCATGGGGTGCGCGTGAACTGCGTGTCGCCGGGTCTGGTGGCGACGCCGCTGGTGACTGAGATTTTCAAGCTCGGGGCGGAGGAGCTGAGCAAGATGATGGCGGCGATTTATACGGGAAGCCAATATGGGCCGGTGAAGGAGAAAGACCTGGCGGATGCAGTGGTGTTCTTGGCCTCTGAGGACTCAGCGTTGATCACCGGCCAGAATTTGGTTGTTGATGGTGGACATGGAACCAAGGCCTTATCACTATTGAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

143

Amino Acids

14.97

Weight (kDa)

7.69

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 2 - 132 1.2e-27 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 3 - 79 5e-14 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 379
AccII CGCG 5 cut(s) 23, 30, 32, 74, 183
AciI CCGC 9 cut(s) 5, 23, 72, 86, 93, 218, 248, 272, 323
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 2 cut(s) 238, 424
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 3 cut(s) 163, 241, 256
AluI AGCT 3 cut(s) 163, 241, 256
Alw21I GWGCWC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 4 cut(s) 299, 342, 370, 408
ApaLI GTGCAC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 57, 160
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 2 cut(s) 32, 183
AspS9I GGNCC 1 cut(s) 299
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 178, 235, 316, 358
AvaI CYCGRG 1 cut(s) 242
BaeGI GKGCMC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 69, 172
BccI CCATC 3 cut(s) 28, 262, 383
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BciT130I CCWGG 1 cut(s) 320
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 1 cut(s) 201
BisI GCNGC 6 cut(s) 6, 24, 58, 161, 218, 273
BlpI GCTNAGC 1 cut(s) 257
BlsI GCNGC 6 cut(s) 7, 25, 59, 162, 219, 274
Bme1390I CCNGG 2 cut(s) 201, 320
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 2 cut(s) 201, 320
BmsI GCATC 1 cut(s) 316
Bpu1102I GCTNAGC 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 2 cut(s) 301, 368
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 4 cut(s) 219, 248, 339, 369
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 2 cut(s) 69, 172
BsgI GTGCAG 1 cut(s) 179
Bsh1236I CGCG 5 cut(s) 23, 30, 32, 74, 183
BshFI GGCC 4 cut(s) 301, 344, 372, 410
BsiHKAI GWGCWC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 3 cut(s) 200, 302, 369
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 4 cut(s) 301, 344, 372, 410
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 363
Bsp1720I GCTNAGC 1 cut(s) 257
BspACI CCGC 9 cut(s) 5, 23, 72, 86, 93, 218, 248, 272, 323
BspANI GGCC 4 cut(s) 301, 344, 372, 410
BspCNI CTCAG 4 cut(s) 220, 249, 340, 368
BspFNI CGCG 5 cut(s) 23, 30, 32, 74, 183
BspLI GGNNCC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 2 cut(s) 301, 368
BssAI RCCGGY 2 cut(s) 301, 368
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 1 cut(s) 363
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 320
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 3 cut(s) 66, 136, 178
BstC8I GCNNGC 6 cut(s) 21, 28, 76, 132, 154, 158
BstDEI CTNAG 4 cut(s) 228, 257, 348, 355
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 5 cut(s) 23, 30, 32, 74, 183
BstHHI GCGC 2 cut(s) 32, 183
BstKTI GATC 1 cut(s) 366
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 7 cut(s) 29, 66, 75, 136, 169, 178, 189
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 2 cut(s) 199, 318
BstSLI GKGCMC 1 cut(s) 71
BstUI CGCG 5 cut(s) 23, 30, 32, 74, 183
BstV1I GCAGC 2 cut(s) 69, 172
BsuRI GGCC 4 cut(s) 301, 344, 372, 410
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 336
Cac8I GCNNGC 6 cut(s) 21, 28, 76, 132, 154, 158
CfoI GCGC 2 cut(s) 32, 183
Cfr10I RCCGGY 2 cut(s) 301, 368
Cfr13I GGNCC 1 cut(s) 299
CseI GACGC 1 cut(s) 223
CviAII CATG 4 cut(s) 106, 173, 398, 429
CviJI RGCY 9 cut(s) 26, 163, 241, 256, 291, 301, 344, 372, 410
CviKI_1 RGCY 9 cut(s) 26, 163, 241, 256, 291, 301, 344, 372, 410
DdeI CTNAG 4 cut(s) 228, 257, 348, 355
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 370
EciI GGCGGA 3 cut(s) 101, 263, 338
Eco130I CCWWGG 1 cut(s) 405
Eco147I AGGCCT 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 4 cut(s) 109, 176, 401, 432
FaiI YATR 7 cut(s) 62, 107, 174, 282, 297, 399, 430
FaqI GGGAC 1 cut(s) 109
FatI CATG 4 cut(s) 105, 172, 397, 428
FauI CCCGC 1 cut(s) 86
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 6 cut(s) 6, 24, 58, 161, 218, 273
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 6 cut(s) 6, 24, 58, 161, 218, 273
GlaI GCGC 2 cut(s) 31, 182
GluI GCNGC 6 cut(s) 6, 24, 58, 161, 218, 273
HaeIII GGCC 4 cut(s) 301, 344, 372, 410
HapII CCGG 3 cut(s) 200, 302, 369
HgaI GACGC 1 cut(s) 223
HhaI GCGC 2 cut(s) 32, 183
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 4 cut(s) 109, 176, 401, 432
Hin6I GCGC 2 cut(s) 30, 181
HinP1I GCGC 2 cut(s) 30, 181
HinfI GANTC 1 cut(s) 353
HpaII CCGG 3 cut(s) 200, 302, 369
HphI GGTGA 4 cut(s) 178, 235, 316, 358
Hpy166II GTNNAC 3 cut(s) 69, 187, 395
Hpy188I TCNGA 1 cut(s) 349
Hpy8I GTNNAC 3 cut(s) 69, 187, 395
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 37, 301
HpyCH4V TGCA 3 cut(s) 69, 160, 329
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 66, 75, 136, 169, 178, 189
HpyF3I CTNAG 4 cut(s) 228, 257, 348, 355
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 4 cut(s) 109, 176, 401, 432
HspAI GCGC 2 cut(s) 30, 181
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 2 cut(s) 69, 172
LweI GCATC 1 cut(s) 316
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 1 cut(s) 376
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 5 cut(s) 47, 138, 244, 343, 355
MspA1I CMGCKG 2 cut(s) 163, 220
MspI CCGG 3 cut(s) 200, 302, 369
MspR9I CCNGG 2 cut(s) 201, 320
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 5 cut(s) 23, 30, 32, 74, 183
MwoI GCNNNNNNNGC 7 cut(s) 29, 66, 75, 136, 169, 178, 189
NciI CCSGG 1 cut(s) 201
NdeII GATC 1 cut(s) 363
NlaIII CATG 4 cut(s) 109, 176, 401, 432
NlaIV GGNNCC 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 223
PceI AGGCCT 1 cut(s) 410
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 6 cut(s) 7, 25, 59, 162, 219, 274
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 318
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 163
SatI GCNGC 6 cut(s) 6, 24, 58, 161, 218, 273
Sau3AI GATC 1 cut(s) 363
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 201, 320
SduI GDGCHC 1 cut(s) 71
SetI ASST 5 cut(s) 149, 165, 243, 258, 321
SfaNI GCATC 1 cut(s) 316
Sse9I AATT 1 cut(s) 376
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 9 cut(s) 5, 23, 72, 86, 93, 218, 248, 272, 323
StuI AGGCCT 1 cut(s) 410
StyD4I CCNGG 2 cut(s) 199, 318
StyI CCWWGG 1 cut(s) 405
TaqI TCGA 1 cut(s) 125
TasI AATT 1 cut(s) 376
TauI GCSGC 4 cut(s) 8, 26, 220, 275
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 57, 160
Tsp45I GTSAC 1 cut(s) 223
TspGWI ACGGA 2 cut(s) 113, 125
TspRI CASTG 1 cut(s) 336
Van91I CCANNNNNTGG 1 cut(s) 379
VneI GTGCAC 1 cut(s) 67
XapI RAATTY 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.