oxidation-reduction process
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 329 |
| AccB1I | GGYRCC | 1 cut(s) | 866 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 844 |
| AccI | GTMKAC | 3 cut(s) | 321, 980, 996 |
| AccII | CGCG | 9 cut(s) | 371, 386, 453, 479, 484, 563, 590, 634, 645 |
| AclWI | GGATC | 2 cut(s) | 229, 1036 |
| AcoI | YGGCCR | 7 cut(s) | 49, 183, 227, 249, 281, 343, 835 |
| AcuI | CTGAAG | 1 cut(s) | 740 |
| AcvI | CACGTG | 1 cut(s) | 784 |
| AcyI | GRCGYC | 2 cut(s) | 677, 809 |
| AdeI | CACNNNGTG | 1 cut(s) | 592 |
| AfaI | GTAC | 2 cut(s) | 362, 393 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 34, 170, 171, 247, 279, 457, 844, 990 |
| AflIII | ACRYGT | 1 cut(s) | 781 |
| AgsI | TTSAA | 3 cut(s) | 34, 104, 971 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1050 |
| AjiI | CACGTC | 1 cut(s) | 355 |
| AjnI | CCWGG | 1 cut(s) | 83 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 809, 841 |
| AluBI | AGCT | 8 cut(s) | 12, 197, 409, 534, 625, 694, 718, 1009 |
| AluI | AGCT | 8 cut(s) | 12, 197, 409, 534, 625, 694, 718, 1009 |
| Alw21I | GWGCWC | 1 cut(s) | 527 |
| Alw26I | GTCTC | 3 cut(s) | 281, 663, 907 |
| Alw44I | GTGCAC | 1 cut(s) | 523 |
| AlwI | GGATC | 2 cut(s) | 229, 1036 |
| Ama87I | CYCGRG | 1 cut(s) | 96 |
| ApaLI | GTGCAC | 1 cut(s) | 523 |
| ApeKI | GCWGC | 6 cut(s) | 513, 534, 622, 734, 753, 1006 |
| AspLEI | GCGC | 4 cut(s) | 484, 563, 634, 645 |
| AspS9I | GGNCC | 2 cut(s) | 162, 764 |
| AsuC2I | CCSGG | 2 cut(s) | 129, 663 |
| AsuHPI | GGTGA | 5 cut(s) | 412, 445, 616, 697, 823 |
| AvaI | CYCGRG | 1 cut(s) | 96 |
| BaeGI | GKGCMC | 1 cut(s) | 527 |
| BanI | GGYRCC | 1 cut(s) | 866 |
| BbrPI | CACGTG | 1 cut(s) | 784 |
| Bbv12I | GWGCWC | 1 cut(s) | 527 |
| BbvI | GCAGC | 6 cut(s) | 521, 525, 634, 746, 765, 1018 |
| BccI | CCATC | 9 cut(s) | 115, 397, 430, 451, 484, 755, 766, 848, 1019 |
| BceAI | ACGGC | 2 cut(s) | 358, 543 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 123, 157 |
| BciT130I | CCWGG | 1 cut(s) | 85 |
| BcnI | CCSGG | 2 cut(s) | 129, 663 |
| BcoDI | GTCTC | 3 cut(s) | 281, 663, 907 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BfmI | CTRYAG | 1 cut(s) | 7 |
| BglII | AGATCT | 1 cut(s) | 1036 |
| Bme1390I | CCNGG | 3 cut(s) | 85, 129, 663 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1050 |
| BmeT110I | CYCGRG | 1 cut(s) | 96 |
| BmgBI | CACGTC | 1 cut(s) | 355 |
| BmgT120I | GGNCC | 2 cut(s) | 162, 764 |
| BmiI | GGNNCC | 1 cut(s) | 868 |
| BmrFI | CCNGG | 3 cut(s) | 85, 129, 663 |
| BmsI | GCATC | 2 cut(s) | 143, 781 |
| BpuMI | CCSGG | 2 cut(s) | 129, 663 |
| BsaAI | YACGTR | 1 cut(s) | 784 |
| BsaHI | GRCGYC | 2 cut(s) | 677, 809 |
| BsaI | GGTCTC | 1 cut(s) | 281 |
| BsaJI | CCNNGG | 3 cut(s) | 451, 870, 920 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 809, 839 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 34, 170, 171, 247, 279, 457, 844, 990 |
| Bse118I | RCCGGY | 3 cut(s) | 56, 181, 833 |
| BseBI | CCWGG | 1 cut(s) | 85 |
| BseDI | CCNNGG | 3 cut(s) | 451, 870, 920 |
| BseGI | GGATG | 3 cut(s) | 134, 462, 796 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 34, 170, 171, 247, 279, 457, 844, 990 |
| BseMII | CTCAG | 1 cut(s) | 27 |
| BseRI | GAGGAG | 1 cut(s) | 830 |
| BseSI | GKGCMC | 1 cut(s) | 527 |
| BseX3I | CGGCCG | 1 cut(s) | 281 |
| BseXI | GCAGC | 6 cut(s) | 521, 525, 634, 746, 765, 1018 |
| BseYI | CCCAGC | 1 cut(s) | 595 |
| BsgI | GTGCAG | 1 cut(s) | 641 |
| Bsh1236I | CGCG | 9 cut(s) | 371, 386, 453, 479, 484, 563, 590, 634, 645 |
| Bsh1285I | CGRYCG | 1 cut(s) | 284 |
| BshNI | GGYRCC | 1 cut(s) | 866 |
| BsiEI | CGRYCG | 1 cut(s) | 284 |
| BsiHKAI | GWGCWC | 1 cut(s) | 527 |
| BsiHKCI | CYCGRG | 1 cut(s) | 96 |
| BslFI | GGGAC | 4 cut(s) | 187, 565, 688, 873 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 34, 170, 171, 247, 279, 457, 844, 990 |
| BsmAI | GTCTC | 3 cut(s) | 281, 663, 907 |
| BsmBI | CGTCTC | 1 cut(s) | 907 |
| BsmFI | GGGAC | 4 cut(s) | 187, 565, 688, 873 |
| Bso31I | GGTCTC | 1 cut(s) | 281 |
| BsoBI | CYCGRG | 1 cut(s) | 96 |
| Bsp1286I | GDGCHC | 1 cut(s) | 527 |
| Bsp1407I | TGTACA | 1 cut(s) | 360 |
| Bsp143I | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| BspCNI | CTCAG | 1 cut(s) | 26 |
| BspFNI | CGCG | 9 cut(s) | 371, 386, 453, 479, 484, 563, 590, 634, 645 |
| BspLI | GGNNCC | 1 cut(s) | 868 |
| BspPI | GGATC | 2 cut(s) | 229, 1036 |
| BspQI | GCTCTTC | 1 cut(s) | 708 |
| BspT107I | GGYRCC | 1 cut(s) | 866 |
| BspTNI | GGTCTC | 1 cut(s) | 281 |
| BsrFI | RCCGGY | 3 cut(s) | 56, 181, 833 |
| BsrGI | TGTACA | 1 cut(s) | 360 |
| BssAI | RCCGGY | 3 cut(s) | 56, 181, 833 |
| BssECI | CCNNGG | 3 cut(s) | 451, 870, 920 |
| BssMI | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| BssNAI | GTATAC | 1 cut(s) | 981 |
| BssNI | GRCGYC | 2 cut(s) | 677, 809 |
| BssT1I | CCWWGG | 1 cut(s) | 870 |
| Bst1107I | GTATAC | 1 cut(s) | 981 |
| Bst2UI | CCWGG | 1 cut(s) | 85 |
| Bst4CI | ACNGT | 7 cut(s) | 331, 400, 888, 898, 965, 975, 1001 |
| Bst6I | CTCTTC | 2 cut(s) | 494, 708 |
| BstACI | GRCGYC | 2 cut(s) | 677, 809 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 522, 592 |
| BstAUI | TGTACA | 1 cut(s) | 360 |
| BstBAI | YACGTR | 1 cut(s) | 784 |
| BstDEI | CTNAG | 1 cut(s) | 13 |
| BstDSI | CCRYGG | 2 cut(s) | 451, 920 |
| BstF5I | GGATG | 3 cut(s) | 134, 462, 796 |
| BstFNI | CGCG | 9 cut(s) | 371, 386, 453, 479, 484, 563, 590, 634, 645 |
| BstHHI | GCGC | 4 cut(s) | 484, 563, 634, 645 |
| BstKTI | GATC | 6 cut(s) | 48, 237, 579, 988, 1031, 1039 |
| BstMAI | GTCTC | 3 cut(s) | 281, 663, 907 |
| BstMBI | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| BstMCI | CGRYCG | 1 cut(s) | 284 |
| BstNI | CCWGG | 1 cut(s) | 85 |
| BstNSI | RCATGY | 1 cut(s) | 1050 |
| BstSCI | CCNGG | 3 cut(s) | 83, 127, 661 |
| BstSFI | CTRYAG | 1 cut(s) | 7 |
| BstSLI | GKGCMC | 1 cut(s) | 527 |
| BstUI | CGCG | 9 cut(s) | 371, 386, 453, 479, 484, 563, 590, 634, 645 |
| BstV1I | GCAGC | 6 cut(s) | 521, 525, 634, 746, 765, 1018 |
| BstX2I | RGATCY | 2 cut(s) | 234, 1036 |
| BstYI | RGATCY | 2 cut(s) | 234, 1036 |
| BstZ17I | GTATAC | 1 cut(s) | 981 |
| BstZI | CGGCCG | 1 cut(s) | 281 |
| BtgI | CCRYGG | 2 cut(s) | 451, 920 |
| BtgZI | GCGATG | 2 cut(s) | 503, 771 |
| BtrI | CACGTC | 1 cut(s) | 355 |
| BtsCI | GGATG | 3 cut(s) | 134, 462, 796 |
| CfoI | GCGC | 4 cut(s) | 484, 563, 634, 645 |
| Cfr10I | RCCGGY | 3 cut(s) | 56, 181, 833 |
| Cfr13I | GGNCC | 2 cut(s) | 162, 764 |
| Cfr42I | CCGCGG | 1 cut(s) | 454 |
| CseI | GACGC | 3 cut(s) | 375, 685, 798 |
| Csp6I | GTAC | 2 cut(s) | 361, 392 |
| CviAII | CATG | 4 cut(s) | 53, 139, 420, 1047 |
| CviQI | GTAC | 2 cut(s) | 361, 392 |
| DdeI | CTNAG | 1 cut(s) | 13 |
| DpnI | GATC | 6 cut(s) | 47, 236, 578, 987, 1030, 1038 |
| DpnII | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| DraI | TTTAAA | 1 cut(s) | 892 |
| DraIII | CACNNNGTG | 1 cut(s) | 592 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 329 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1050 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 329 |
| EaeI | YGGCCR | 7 cut(s) | 49, 183, 227, 249, 281, 343, 835 |
| EagI | CGGCCG | 1 cut(s) | 281 |
| Eam1104I | CTCTTC | 2 cut(s) | 494, 708 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1050 |
| EarI | CTCTTC | 2 cut(s) | 494, 708 |
| EciI | GGCGGA | 3 cut(s) | 227, 557, 803 |
| EclXI | CGGCCG | 1 cut(s) | 281 |
| Eco130I | CCWWGG | 1 cut(s) | 870 |
| Eco31I | GGTCTC | 1 cut(s) | 281 |
| Eco52I | CGGCCG | 1 cut(s) | 281 |
| Eco57I | CTGAAG | 1 cut(s) | 740 |
| Eco72I | CACGTG | 1 cut(s) | 784 |
| Eco88I | CYCGRG | 1 cut(s) | 96 |
| EcoRII | CCWGG | 1 cut(s) | 83 |
| EcoT14I | CCWWGG | 1 cut(s) | 870 |
| ErhI | CCWWGG | 1 cut(s) | 870 |
| Esp3I | CGTCTC | 1 cut(s) | 907 |
| FaeI | CATG | 4 cut(s) | 56, 142, 423, 1050 |
| FaiI | YATR | 9 cut(s) | 54, 140, 421, 518, 731, 742, 840, 981, 1048 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 26, 58 |
| FaqI | GGGAC | 4 cut(s) | 187, 565, 688, 873 |
| FatI | CATG | 4 cut(s) | 52, 138, 419, 1046 |
| FauI | CCCGC | 4 cut(s) | 299, 364, 446, 458 |
| FblI | GTMKAC | 3 cut(s) | 321, 980, 996 |
| FokI | GGATG | 3 cut(s) | 121, 469, 803 |
| FspBI | CTAG | 1 cut(s) | 317 |
| GlaI | GCGC | 4 cut(s) | 483, 562, 633, 644 |
| GsaI | CCCAGC | 1 cut(s) | 599 |
| HgaI | GACGC | 3 cut(s) | 375, 685, 798 |
| HhaI | GCGC | 4 cut(s) | 484, 563, 634, 645 |
| Hin1I | GRCGYC | 2 cut(s) | 677, 809 |
| Hin1II | CATG | 4 cut(s) | 56, 142, 423, 1050 |
| Hin6I | GCGC | 4 cut(s) | 482, 561, 632, 643 |
| HinP1I | GCGC | 4 cut(s) | 482, 561, 632, 643 |
| HincII | GTYRAC | 2 cut(s) | 322, 997 |
| HindII | GTYRAC | 2 cut(s) | 322, 997 |
| HinfI | GANTC | 4 cut(s) | 323, 504, 818, 1012 |
| HphI | GGTGA | 5 cut(s) | 412, 445, 616, 697, 823 |
| Hpy166II | GTNNAC | 6 cut(s) | 322, 445, 525, 649, 981, 997 |
| Hpy188I | TCNGA | 6 cut(s) | 16, 73, 814, 943, 958, 1024 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 580, 747 |
| Hpy8I | GTNNAC | 6 cut(s) | 322, 445, 525, 649, 981, 997 |
| Hpy99I | CGWCG | 8 cut(s) | 335, 356, 391, 568, 814, 888, 979, 1001 |
| HpyAV | CCTTC | 1 cut(s) | 715 |
| HpyCH4III | ACNGT | 7 cut(s) | 331, 400, 888, 898, 965, 975, 1001 |
| HpyCH4IV | ACGT | 3 cut(s) | 354, 783, 907 |
| HpyCH4V | TGCA | 4 cut(s) | 525, 622, 914, 1006 |
| HpyF3I | CTNAG | 1 cut(s) | 13 |
| HpySE526I | ACGT | 3 cut(s) | 354, 783, 907 |
| Hsp92I | GRCGYC | 2 cut(s) | 677, 809 |
| Hsp92II | CATG | 4 cut(s) | 56, 142, 423, 1050 |
| HspAI | GCGC | 4 cut(s) | 482, 561, 632, 643 |
| KroI | GCCGGC | 1 cut(s) | 181 |
| KroNI | GCCGGC | 1 cut(s) | 183 |
| KspI | CCGCGG | 1 cut(s) | 454 |
| Kzo9I | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| LguI | GCTCTTC | 1 cut(s) | 708 |
| LmnI | GCTCC | 2 cut(s) | 131, 406 |
| Lsp1109I | GCAGC | 6 cut(s) | 521, 525, 634, 746, 765, 1018 |
| LweI | GCATC | 2 cut(s) | 143, 781 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MaeII | ACGT | 3 cut(s) | 354, 783, 907 |
| MalI | GATC | 6 cut(s) | 47, 236, 578, 987, 1030, 1038 |
| MboI | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| MboII | GAAGA | 2 cut(s) | 511, 725 |
| MflI | RGATCY | 2 cut(s) | 234, 1036 |
| MhlI | GDGCHC | 1 cut(s) | 527 |
| MluCI | AATT | 2 cut(s) | 191, 841 |
| MlyI | GAGTC | 3 cut(s) | 317, 513, 827 |
| MmeI | TCCRAC | 1 cut(s) | 792 |
| MnlI | CCTC | 6 cut(s) | 248, 269, 600, 703, 808, 925 |
| MroNI | GCCGGC | 1 cut(s) | 181 |
| MseI | TTAA | 2 cut(s) | 699, 891 |
| MslI | CAYNNNNRTG | 2 cut(s) | 143, 919 |
| MspA1I | CMGCKG | 6 cut(s) | 453, 625, 682, 737, 769, 1009 |
| MspR9I | CCNGG | 3 cut(s) | 85, 129, 663 |
| MvaI | CCWGG | 1 cut(s) | 85 |
| MvnI | CGCG | 9 cut(s) | 371, 386, 453, 479, 484, 563, 590, 634, 645 |
| NaeI | GCCGGC | 1 cut(s) | 183 |
| NciI | CCSGG | 2 cut(s) | 129, 663 |
| NdeII | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| NgoMIV | GCCGGC | 1 cut(s) | 181 |
| NlaIII | CATG | 4 cut(s) | 56, 142, 423, 1050 |
| NlaIV | GGNNCC | 1 cut(s) | 868 |
| NspI | RCATGY | 1 cut(s) | 1050 |
| PciSI | GCTCTTC | 1 cut(s) | 708 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 69, 327, 348, 560, 572 |
| PdiI | GCCGGC | 1 cut(s) | 183 |
| PfeI | GAWTC | 1 cut(s) | 1012 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 844 |
| PleI | GAGTC | 3 cut(s) | 317, 512, 826 |
| PmaCI | CACGTG | 1 cut(s) | 784 |
| PmlI | CACGTG | 1 cut(s) | 784 |
| PpsI | GAGTC | 3 cut(s) | 317, 512, 826 |
| Ppu21I | YACGTR | 1 cut(s) | 784 |
| Psp6I | CCWGG | 1 cut(s) | 83 |
| PspCI | CACGTG | 1 cut(s) | 784 |
| PspFI | CCCAGC | 1 cut(s) | 595 |
| PspGI | CCWGG | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 1 cut(s) | 868 |
| PspPI | GGNCC | 2 cut(s) | 162, 764 |
| PsuI | RGATCY | 2 cut(s) | 234, 1036 |
| PvuII | CAGCTG | 2 cut(s) | 625, 1009 |
| RsaI | GTAC | 2 cut(s) | 362, 393 |
| RsaNI | GTAC | 2 cut(s) | 361, 392 |
| RseI | CAYNNNNRTG | 2 cut(s) | 143, 919 |
| SacII | CCGCGG | 1 cut(s) | 454 |
| SalI | GTCGAC | 2 cut(s) | 320, 995 |
| SapI | GCTCTTC | 1 cut(s) | 708 |
| SaqAI | TTAA | 2 cut(s) | 699, 891 |
| Sau3AI | GATC | 6 cut(s) | 45, 234, 576, 985, 1028, 1036 |
| Sau96I | GGNCC | 2 cut(s) | 162, 764 |
| SchI | GAGTC | 3 cut(s) | 317, 513, 827 |
| ScrFI | CCNGG | 3 cut(s) | 85, 129, 663 |
| SduI | GDGCHC | 1 cut(s) | 527 |
| SfaNI | GCATC | 2 cut(s) | 143, 781 |
| SfcI | CTRYAG | 1 cut(s) | 7 |
| Sfr303I | CCGCGG | 1 cut(s) | 454 |
| SgrBI | CCGCGG | 1 cut(s) | 454 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 143, 919 |
| Sse9I | AATT | 2 cut(s) | 191, 841 |
| SspMI | CTAG | 1 cut(s) | 317 |
| StyD4I | CCNGG | 3 cut(s) | 83, 127, 661 |
| StyI | CCWWGG | 1 cut(s) | 870 |
| TaaI | ACNGT | 7 cut(s) | 331, 400, 888, 898, 965, 975, 1001 |
| TaiI | ACGT | 3 cut(s) | 357, 786, 910 |
| TaqII | GACCGA | 1 cut(s) | 295 |
| TasI | AATT | 2 cut(s) | 191, 841 |
| TatI | WGTACW | 1 cut(s) | 360 |
| TauI | GCSGC | 6 cut(s) | 386, 464, 482, 632, 682, 769 |
| TfiI | GAWTC | 1 cut(s) | 1012 |
| Tru1I | TTAA | 2 cut(s) | 699, 891 |
| Tru9I | TTAA | 2 cut(s) | 699, 891 |
| TseI | GCWGC | 6 cut(s) | 513, 534, 622, 734, 753, 1006 |
| TspDTI | ATGAA | 2 cut(s) | 817, 960 |
| TspGWI | ACGGA | 4 cut(s) | 569, 581, 909, 1005 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 844 |
| VneI | GTGCAC | 1 cut(s) | 523 |
| XceI | RCATGY | 1 cut(s) | 1050 |
| XmiI | GTMKAC | 3 cut(s) | 321, 980, 996 |
| XspI | CTAG | 1 cut(s) | 317 |