Rorug07G0312900

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000222
Physical Location & Seq
Forward (+)
31381659 .. 31382288
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0312900.1

Sequence Viewer

Length: 630 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGAGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTTAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTTTAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCCAGATCGAGTTCAAGAACGTTTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATATATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCAATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

209

Amino Acids

23.39

Weight (kDa)

8.72

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 4.6e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 4 cut(s) 82, 265, 546, 625
AclI AACGTT 1 cut(s) 225
AclWI GGATC 2 cut(s) 188, 363
AcoI YGGCCR 1 cut(s) 205
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 203, 337
AfiI CCNNNNNNNGG 1 cut(s) 497
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 220, 473
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 5 cut(s) 130, 193, 404, 580, 605
AluI AGCT 5 cut(s) 130, 193, 404, 580, 605
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 188, 363
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 153, 276
AsuHPI GGTGA 2 cut(s) 335, 512
AsuII TTCGAA 1 cut(s) 372
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 256, 582
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 530
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 4 cut(s) 44, 78, 362, 396
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 102
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 2 cut(s) 51, 625
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 2 cut(s) 52, 626
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 4 cut(s) 6, 155, 337, 623
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 581
Bpu14I TTCGAA 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse21I CCTNAGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 2 cut(s) 342, 595
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 3 cut(s) 256, 300, 582
Bsp143I GATC 5 cut(s) 106, 180, 210, 308, 355
Bsp1720I GCTNAGC 1 cut(s) 581
BspACI CCGC 4 cut(s) 82, 265, 546, 625
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 343, 594
BspLI GGNNCC 4 cut(s) 6, 155, 337, 623
BspPI GGATC 2 cut(s) 188, 363
BspT104I TTCGAA 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 335
BspTI CTTAAG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 210, 308, 355
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 351, 581
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 5 cut(s) 109, 183, 213, 311, 358
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 106, 180, 210, 308, 355
BstMWI GCNNNNNNNGC 3 cut(s) 79, 401, 591
BstNSI RCATGY 1 cut(s) 73
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 37, 292
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 2 cut(s) 202, 336
CviAII CATG 6 cut(s) 70, 293, 301, 463, 497, 520
CviQI GTAC 2 cut(s) 202, 336
DdeI CTNAG 2 cut(s) 351, 581
DpnI GATC 5 cut(s) 108, 182, 212, 310, 357
DpnII GATC 5 cut(s) 106, 180, 210, 308, 355
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 2 cut(s) 256, 582
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 384
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 2 cut(s) 256, 582
FaeI CATG 6 cut(s) 73, 296, 304, 466, 500, 523
FaqI GGGAC 1 cut(s) 139
FatI CATG 6 cut(s) 69, 292, 300, 462, 496, 519
Fnu4HI GCNGC 2 cut(s) 51, 625
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 582
Fsp4HI GCNGC 2 cut(s) 51, 625
GluI GCNGC 2 cut(s) 51, 625
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 207
Hin1II CATG 6 cut(s) 73, 296, 304, 466, 500, 523
HinfI GANTC 4 cut(s) 94, 117, 172, 374
HphI GGTGA 2 cut(s) 335, 512
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 4 cut(s) 111, 177, 286, 535
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 619
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 2 cut(s) 424, 488
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 383, 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 401, 591
HpyF3I CTNAG 2 cut(s) 351, 581
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 6 cut(s) 73, 296, 304, 466, 500, 523
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 5 cut(s) 106, 180, 210, 308, 355
LmnI GCTCC 2 cut(s) 127, 621
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 392
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 41, 515, 548
MalI GATC 5 cut(s) 108, 182, 212, 310, 357
MboI GATC 5 cut(s) 106, 180, 210, 308, 355
MboII GAAGA 5 cut(s) 280, 283, 369, 390, 535
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 3 cut(s) 256, 300, 582
MluCI AATT 1 cut(s) 340
MnlI CCTC 9 cut(s) 22, 29, 171, 267, 346, 492, 496, 533, 589
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 3 cut(s) 123, 366, 420
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 3 cut(s) 193, 404, 627
MspCI CTTAAG 1 cut(s) 122
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 79, 401, 591
NdeII GATC 5 cut(s) 106, 180, 210, 308, 355
NlaIII CATG 6 cut(s) 73, 296, 304, 466, 500, 523
NlaIV GGNNCC 4 cut(s) 6, 155, 337, 623
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 1 cut(s) 73
NspV TTCGAA 1 cut(s) 372
OliI CACNNNNGTG 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 94, 117, 172, 374
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 2 cut(s) 52, 626
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 4 cut(s) 6, 155, 337, 623
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 1 cut(s) 180
PvuII CAGCTG 2 cut(s) 193, 404
RsaI GTAC 2 cut(s) 203, 337
RsaNI GTAC 2 cut(s) 202, 336
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 123, 366, 420
SatI GCNGC 2 cut(s) 51, 625
Sau3AI GATC 5 cut(s) 106, 180, 210, 308, 355
Sau96I GGNCC 2 cut(s) 153, 276
SduI GDGCHC 3 cut(s) 256, 300, 582
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 2 cut(s) 122, 575
SmoI CTYRAG 2 cut(s) 122, 575
Sse9I AATT 1 cut(s) 340
SsiI CCGC 4 cut(s) 82, 265, 546, 625
SstI GAGCTC 1 cut(s) 582
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 372
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 627
TfiI GAWTC 4 cut(s) 94, 117, 172, 374
Tru1I TTAA 3 cut(s) 123, 366, 420
Tru9I TTAA 3 cut(s) 123, 366, 420
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 281, 473, 536
Van91I CCANNNNNTGG 1 cut(s) 497
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.