Rmu_sc0000429.1_g000001

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000429.1
OG0000222
Physical Location & Seq
Forward (+)
1 .. 3258
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000429.1_g000001.1.cds

Sequence Viewer

Length: 310 bp
gcgggagacgatggcggcggtttattcgggaagggatgaaccgctgacggagaagcacgtggcggatgcggtggtgtttctcgcttgtgaggactcggcgttcgtcaccggccataatttggtggttgatggtggacttggcaccaaattccagtcatctgtcgccggatttcggttaccggttcccggaatccggtcaccggtcgccggaatccgatcaccgttcatcggagtccggtcgccggagaccgcgccggccactggtcaccggagcacagcaaggtggaaggtgacttctctctctaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

102

Amino Acids

10.78

Weight (kDa)

9.51

Isoelectric Point (pI)

73.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AccB7I CCANNNNNTGG 1 cut(s) 119
AccII CGCG 1 cut(s) 252
AciI CCGC 7 cut(s) 2, 15, 18, 42, 63, 69, 250
AcoI YGGCCR 2 cut(s) 110, 256
AcsI RAATTY 1 cut(s) 147
AcvI CACGTG 1 cut(s) 59
AfiI CCNNNNNNNGG 9 cut(s) 119, 172, 186, 193, 200, 207, 228, 242, 261
AgeI ACCGGT 2 cut(s) 179, 200
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 240
AoxI GGCC 2 cut(s) 110, 256
ApoI RAATTY 1 cut(s) 147
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AsiGI ACCGGT 2 cut(s) 179, 200
AspLEI GCGC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 5 cut(s) 98, 190, 211, 258, 302
BanI GGYRCC 1 cut(s) 141
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 2 cut(s) 5, 123
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 240
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 187
BmiI GGNNCC 2 cut(s) 143, 184
BmrFI CCNGG 1 cut(s) 187
BmsI GCATC 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 187
BsaAI YACGTR 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 240
BsaWI WCCGGW 5 cut(s) 179, 193, 200, 235, 268
Bsc4I CCNNNNNNNGG 9 cut(s) 119, 172, 186, 193, 200, 207, 228, 242, 261
Bse118I RCCGGY 4 cut(s) 108, 179, 200, 254
Bse1I ACTGG 2 cut(s) 152, 266
BseGI GGATG 2 cut(s) 41, 71
BseLI CCNNNNNNNGG 9 cut(s) 119, 172, 186, 193, 200, 207, 228, 242, 261
BseNI ACTGG 2 cut(s) 152, 266
Bsh1236I CGCG 1 cut(s) 252
Bsh1285I CGRYCG 2 cut(s) 205, 240
BshFI GGCC 2 cut(s) 112, 258
BshNI GGYRCC 1 cut(s) 141
BshTI ACCGGT 2 cut(s) 179, 200
BsiEI CGRYCG 2 cut(s) 205, 240
BsiHKAI GWGCWC 1 cut(s) 276
BslI CCNNNNNNNGG 9 cut(s) 119, 172, 186, 193, 200, 207, 228, 242, 261
BsmAI GTCTC 1 cut(s) 240
BsnI GGCC 2 cut(s) 112, 258
Bso31I GGTCTC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 7 cut(s) 2, 15, 18, 42, 63, 69, 250
BspANI GGCC 2 cut(s) 112, 258
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 143, 184
BspT107I GGYRCC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 240
BsrFI RCCGGY 4 cut(s) 108, 179, 200, 254
BsrI ACTGG 2 cut(s) 152, 266
BssAI RCCGGY 4 cut(s) 108, 179, 200, 254
BssMI GATC 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 223
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 304
BstEII GGTNACC 3 cut(s) 175, 196, 264
BstF5I GGATG 2 cut(s) 41, 71
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 216
BstMCI CGRYCG 2 cut(s) 205, 240
BstPI GGTNACC 3 cut(s) 175, 196, 264
BstSCI CCNGG 1 cut(s) 185
BstUI CGCG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 112, 258
BtsCI GGATG 2 cut(s) 41, 71
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 4 cut(s) 108, 179, 200, 254
CspAI ACCGGT 2 cut(s) 179, 200
CviJI RGCY 2 cut(s) 112, 258
CviKI_1 RGCY 2 cut(s) 112, 258
DdeI CTNAG 1 cut(s) 304
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EaeI YGGCCR 2 cut(s) 110, 256
EciI GGCGGA 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 240
Eco72I CACGTG 1 cut(s) 59
Eco91I GGTNACC 3 cut(s) 175, 196, 264
EcoO65I GGTNACC 3 cut(s) 175, 196, 264
FaiI YATR 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 2 cut(s) 48, 78
Fsp4HI GCNGC 1 cut(s) 16
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 2 cut(s) 112, 258
HhaI GCGC 1 cut(s) 254
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 4 cut(s) 93, 190, 211, 232
HphI GGTGA 5 cut(s) 98, 190, 211, 258, 302
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 216, 231
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 25, 281
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 58
HpyF3I CTNAG 1 cut(s) 304
HpySE526I ACGT 1 cut(s) 58
HspAI GCGC 1 cut(s) 252
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 271
LweI GCATC 1 cut(s) 56
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 5 cut(s) 104, 175, 196, 264, 290
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 116, 147
MlyI GAGTC 2 cut(s) 87, 241
MnlI CCTC 1 cut(s) 83
MroNI GCCGGC 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 187
MvnI CGCG 1 cut(s) 252
NaeI GCCGGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 187
NdeII GATC 1 cut(s) 216
NgoMIV GCCGGC 1 cut(s) 254
NlaIV GGNNCC 2 cut(s) 143, 184
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 4 cut(s) 104, 196, 264, 290
PdiI GCCGGC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 190, 211
PflMI CCANNNNNTGG 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 185
PinAI ACCGGT 2 cut(s) 179, 200
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 2 cut(s) 87, 240
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
PpsI GAGTC 2 cut(s) 87, 240
Ppu21I YACGTR 1 cut(s) 59
PspCI CACGTG 1 cut(s) 59
PspEI GGTNACC 3 cut(s) 175, 196, 264
PspN4I GGNNCC 2 cut(s) 143, 184
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 216
SchI GAGTC 2 cut(s) 87, 241
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 276
SetI ASST 3 cut(s) 61, 285, 292
SfaNI GCATC 1 cut(s) 56
Sse9I AATT 2 cut(s) 116, 147
SsiI CCGC 7 cut(s) 2, 15, 18, 42, 63, 69, 250
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 61
TasI AATT 2 cut(s) 116, 147
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 190, 211
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 4 cut(s) 104, 196, 264, 290
Tsp45I GTSAC 4 cut(s) 104, 196, 264, 290
TspDTI ATGAA 2 cut(s) 52, 215
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.