RLG00000000907

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000222
Physical Location & Seq
Reverse (-)
7862566 .. 7863387
822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000907

Sequence Viewer

Length: 822 bp
ATGACACAGCGGTCACAGCCCATACCAGTACCACTGCTGAAGCTCCACGGCAAGGTGGCCATCGTCACCGGCGCCGCAAGCGGTATCGGAGCAGTCACGGCGCGTCACTTTGCAGACCACGGCGCTCTGGCCGTCGTGATCGCTGACGTCCAAGACTCCAAGGGCCGAGAAGTGGCTGCATCCATCGGCTCCCACCGCTGCACCTACGTCCACTGCGACGTCACCAACGAGGATCAGGTCAAGTCCCTGGTCGAGTTCACTGTCAAGCACTATGGCAGCCTCGACGTCATGTACAGCAACGCTGGGATAACCAGCACGTCGGCGCAGACGGTGCTGGAGCTTGACCTGTCCGGGTACGACAGAGTGATGGCGGTGAACGCGCGCGGAATGGCGGCTTGTGTGAAGCACGCGGCGGGTGCGATGGTGGAGAAGGGGGTGAAGGGGAGCATAGTGTGCACGGCGAGCTTCGTGGCGGACTGCGGGACGGAGAGCTTGACGGACTACACGATGTCCAAGCACGCGGTGTTGGGGCTGGTGAGGTCGGCGAGCGTGCAGCTGGCGCCGCGTGGTGTGCGCGTGAACTGTGTGTCGCCGGGTATGGTGGCGACGCCGCTGATGTGCGACATATTGAAGATTAGTGCGGAAGAGTTGCGGGAAACGATGGCGGCGGTTTATTCGGGAAGGGATGAACCGCTGACGGAGAAGCACGTGGCGGATGCGGTGGTGTTTCTGGCTTGTGAGGACTCGGCGTTCGTCACCGGCCATAATTTGGTGGTTGATGGTGGACTCGGCACCAAGTCGATAGCTGTATTGAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

274

Amino Acids

28.56

Weight (kDa)

6.35

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 18 - 206 2.2e-46 short chain dehydrogenase
KR PF08659 21 - 180 3.9e-08 KR domain
adh_short_C2 PF13561 24 - 263 6.9e-60 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
AatII GACGTC 3 cut(s) 150, 222, 288
AccB1I GGYRCC 3 cut(s) 71, 559, 791
AccB7I CCANNNNNTGG 1 cut(s) 769
AccII CGCG 8 cut(s) 103, 380, 382, 384, 410, 521, 565, 576
AclWI GGATC 1 cut(s) 240
AcoI YGGCCR 3 cut(s) 57, 129, 760
AcuI CTGAAG 1 cut(s) 59
AcvI CACGTG 1 cut(s) 709
AcyI GRCGYC 6 cut(s) 72, 147, 219, 285, 560, 608
AdeI CACNNNGTG 1 cut(s) 523
AfaI GTAC 3 cut(s) 30, 293, 356
AfiI CCNNNNNNNGG 3 cut(s) 52, 172, 769
AgsI TTSAA 2 cut(s) 631, 814
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 1 cut(s) 246
AloI GAACNNNNNNTCC 2 cut(s) 734, 766
AluBI AGCT 6 cut(s) 43, 340, 465, 492, 556, 806
AluI AGCT 6 cut(s) 43, 340, 465, 492, 556, 806
Alw21I GWGCWC 1 cut(s) 458
Alw44I GTGCAC 1 cut(s) 454
AlwI GGATC 1 cut(s) 240
AoxI GGCC 4 cut(s) 57, 129, 163, 760
ApaLI GTGCAC 1 cut(s) 454
ApeKI GCWGC 4 cut(s) 176, 198, 276, 553
ArsI GACNNNNNNTTYG 2 cut(s) 734, 766
AspLEI GCGC 8 cut(s) 74, 103, 125, 325, 382, 384, 562, 576
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 2 cut(s) 352, 594
AsuHPI GGTGA 6 cut(s) 58, 214, 385, 448, 547, 748
BaeGI GKGCMC 1 cut(s) 458
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 3 cut(s) 71, 559, 791
BbrPI CACGTG 1 cut(s) 709
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 4 cut(s) 163, 185, 288, 565
BccI CCATC 6 cut(s) 68, 191, 361, 415, 655, 773
BceAI ACGGC 5 cut(s) 64, 114, 116, 136, 474
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 2 cut(s) 352, 594
BfoI RGCGCY 3 cut(s) 75, 126, 563
Bme1390I CCNGG 3 cut(s) 248, 352, 594
BmgBI CACGTC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 4 cut(s) 73, 190, 561, 793
BmrFI CCNGG 3 cut(s) 248, 352, 594
BmsI GCATC 2 cut(s) 188, 706
BpmI CTGGAG 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 352, 594
BsaAI YACGTR 1 cut(s) 709
BsaHI GRCGYC 6 cut(s) 72, 147, 219, 285, 560, 608
BsaJI CCNNGG 4 cut(s) 46, 118, 159, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 172, 769
Bse118I RCCGGY 2 cut(s) 68, 758
Bse1I ACTGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 4 cut(s) 46, 118, 159, 246
BseGI GGATG 3 cut(s) 179, 691, 721
BseLI CCNNNNNNNGG 3 cut(s) 52, 172, 769
BseNI ACTGG 1 cut(s) 26
BsePI GCGCGC 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 458
BseXI GCAGC 4 cut(s) 163, 185, 288, 565
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 2 cut(s) 184, 572
Bsh1236I CGCG 8 cut(s) 103, 380, 382, 384, 410, 521, 565, 576
BshFI GGCC 4 cut(s) 59, 131, 165, 762
BshNI GGYRCC 3 cut(s) 71, 559, 791
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 4 cut(s) 69, 351, 593, 759
BslFI GGGAC 2 cut(s) 229, 496
BslI CCNNNNNNNGG 3 cut(s) 52, 172, 769
BsmFI GGGAC 2 cut(s) 229, 496
BsnI GGCC 4 cut(s) 59, 131, 165, 762
Bsp1286I GDGCHC 1 cut(s) 458
Bsp1407I TGTACA 1 cut(s) 291
Bsp143I GATC 2 cut(s) 138, 232
BspANI GGCC 4 cut(s) 59, 131, 165, 762
BspFNI CGCG 8 cut(s) 103, 380, 382, 384, 410, 521, 565, 576
BspLI GGNNCC 4 cut(s) 73, 190, 561, 793
BspPI GGATC 1 cut(s) 240
BspT107I GGYRCC 3 cut(s) 71, 559, 791
BsrFI RCCGGY 2 cut(s) 68, 758
BsrGI TGTACA 1 cut(s) 291
BsrI ACTGG 1 cut(s) 26
BssAI RCCGGY 2 cut(s) 68, 758
BssECI CCNNGG 4 cut(s) 46, 118, 159, 246
BssHII GCGCGC 1 cut(s) 380
BssMI GATC 2 cut(s) 138, 232
BssNI GRCGYC 6 cut(s) 72, 147, 219, 285, 560, 608
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 262, 331, 584
Bst6I CTCTTC 1 cut(s) 639
BstACI GRCGYC 6 cut(s) 72, 147, 219, 285, 560, 608
BstAPI GCANNNNNTGC 2 cut(s) 331, 453
BstAUI TGTACA 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 709
BstC8I GCNNGC 8 cut(s) 79, 382, 408, 463, 519, 547, 551, 558
BstDSI CCRYGG 2 cut(s) 46, 118
BstF5I GGATG 3 cut(s) 179, 691, 721
BstFNI CGCG 8 cut(s) 103, 380, 382, 384, 410, 521, 565, 576
BstH2I RGCGCY 3 cut(s) 75, 126, 563
BstHHI GCGC 8 cut(s) 74, 103, 125, 325, 382, 384, 562, 576
BstKTI GATC 2 cut(s) 141, 235
BstMBI GATC 2 cut(s) 138, 232
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 246, 350, 592
BstSLI GKGCMC 1 cut(s) 458
BstUI CGCG 8 cut(s) 103, 380, 382, 384, 410, 521, 565, 576
BstV1I GCAGC 4 cut(s) 163, 185, 288, 565
BsuRI GGCC 4 cut(s) 59, 131, 165, 762
BtgI CCRYGG 2 cut(s) 46, 118
BtgZI GCGATG 1 cut(s) 434
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 3 cut(s) 179, 691, 721
BtsI GCAGTG 2 cut(s) 32, 211
BtsIMutI CAGTG 3 cut(s) 32, 211, 258
Cac8I GCNNGC 8 cut(s) 79, 382, 408, 463, 519, 547, 551, 558
CfoI GCGC 8 cut(s) 74, 103, 125, 325, 382, 384, 562, 576
Cfr10I RCCGGY 2 cut(s) 68, 758
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 2 cut(s) 92, 616
Csp6I GTAC 3 cut(s) 29, 292, 355
CviAII CATG 1 cut(s) 289
CviQI GTAC 3 cut(s) 29, 292, 355
DinI GGCGCC 2 cut(s) 73, 561
DpnI GATC 2 cut(s) 140, 234
DpnII GATC 2 cut(s) 138, 232
DraIII CACNNNGTG 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 3 cut(s) 57, 129, 760
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
EciI GGCGGA 2 cut(s) 488, 728
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 59
Eco72I CACGTG 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 159
EgeI GGCGCC 2 cut(s) 73, 561
EheI GGCGCC 2 cut(s) 73, 561
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 292
FaiI YATR 7 cut(s) 23, 273, 290, 449, 599, 626, 765
FaqI GGGAC 2 cut(s) 229, 496
FatI CATG 1 cut(s) 288
FauI CCCGC 3 cut(s) 406, 473, 645
FokI GGATG 3 cut(s) 166, 698, 728
GlaI GCGC 8 cut(s) 73, 102, 124, 324, 381, 383, 561, 575
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 356
HaeII RGCGCY 3 cut(s) 75, 126, 563
HaeIII GGCC 4 cut(s) 59, 131, 165, 762
HapII CCGG 4 cut(s) 69, 351, 593, 759
HgaI GACGC 2 cut(s) 92, 616
HhaI GCGC 8 cut(s) 74, 103, 125, 325, 382, 384, 562, 576
Hin1I GRCGYC 6 cut(s) 72, 147, 219, 285, 560, 608
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 8 cut(s) 72, 101, 123, 323, 380, 382, 560, 574
HinP1I GCGC 8 cut(s) 72, 101, 123, 323, 380, 382, 560, 574
HinfI GANTC 3 cut(s) 155, 743, 786
HpaII CCGG 4 cut(s) 69, 351, 593, 759
HphI GGTGA 6 cut(s) 58, 214, 385, 448, 547, 748
Hpy166II GTNNAC 6 cut(s) 211, 258, 376, 456, 580, 785
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 136, 678
Hpy8I GTNNAC 6 cut(s) 211, 258, 376, 456, 580, 785
Hpy99I CGWCG 5 cut(s) 137, 221, 287, 322, 610
HpyAV CCTTC 3 cut(s) 424, 433, 675
HpyCH4III ACNGT 3 cut(s) 262, 331, 584
HpyCH4IV ACGT 6 cut(s) 147, 207, 219, 285, 317, 708
HpyCH4V TGCA 5 cut(s) 113, 179, 201, 456, 553
HpySE526I ACGT 6 cut(s) 147, 207, 219, 285, 317, 708
Hsp92I GRCGYC 6 cut(s) 72, 147, 219, 285, 560, 608
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 8 cut(s) 72, 101, 123, 323, 380, 382, 560, 574
KasI GGCGCC 2 cut(s) 71, 559
Kzo9I GATC 2 cut(s) 138, 232
LmnI GCTCC 5 cut(s) 48, 89, 194, 337, 444
Lsp1109I GCAGC 4 cut(s) 163, 185, 288, 565
LweI GCATC 2 cut(s) 188, 706
MaeII ACGT 6 cut(s) 147, 207, 219, 285, 317, 708
MaeIII GTNAC 6 cut(s) 12, 64, 94, 104, 220, 754
MalI GATC 2 cut(s) 140, 234
MauBI CGCGCGCG 1 cut(s) 380
MboI GATC 2 cut(s) 138, 232
MboII GAAGA 2 cut(s) 643, 656
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 1 cut(s) 766
MluNI TGGCCA 1 cut(s) 59
Mly113I GGCGCC 2 cut(s) 72, 560
MlyI GAGTC 3 cut(s) 149, 737, 780
MnlI CCTC 4 cut(s) 223, 290, 531, 733
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 5 cut(s) 10, 198, 556, 613, 694
MspI CCGG 4 cut(s) 69, 351, 593, 759
MspR9I CCNGG 3 cut(s) 248, 352, 594
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 8 cut(s) 103, 380, 382, 384, 410, 521, 565, 576
NarI GGCGCC 2 cut(s) 72, 560
NciI CCSGG 2 cut(s) 352, 594
NdeII GATC 2 cut(s) 138, 232
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 4 cut(s) 73, 190, 561, 793
NmeAIII GCCGAG 3 cut(s) 191, 725, 768
NmuCI GTSAC 6 cut(s) 12, 64, 94, 104, 220, 754
PauI GCGCGC 1 cut(s) 380
PcsI WCGNNNNNNNCGW 3 cut(s) 213, 225, 503
PflMI CCANNNNNTGG 1 cut(s) 769
PleI GAGTC 3 cut(s) 149, 737, 780
PluTI GGCGCC 2 cut(s) 75, 563
PmaCI CACGTG 1 cut(s) 709
PmlI CACGTG 1 cut(s) 709
PpsI GAGTC 3 cut(s) 149, 737, 780
Ppu21I YACGTR 1 cut(s) 709
Psp6I CCWGG 1 cut(s) 246
PspCI CACGTG 1 cut(s) 709
PspFI CCCAGC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 4 cut(s) 73, 190, 561, 793
PspPI GGNCC 1 cut(s) 163
PteI GCGCGC 1 cut(s) 380
PvuII CAGCTG 1 cut(s) 556
RsaI GTAC 3 cut(s) 30, 293, 356
RsaNI GTAC 3 cut(s) 29, 292, 355
Sau3AI GATC 2 cut(s) 138, 232
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 3 cut(s) 149, 737, 780
ScrFI CCNGG 3 cut(s) 248, 352, 594
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 2 cut(s) 188, 706
SfoI GGCGCC 2 cut(s) 73, 561
SgrAI CRCCGGYG 1 cut(s) 68
Sse9I AATT 1 cut(s) 766
SspDI GGCGCC 2 cut(s) 71, 559
StyD4I CCNGG 3 cut(s) 246, 350, 592
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 262, 331, 584
TaiI ACGT 6 cut(s) 150, 210, 222, 288, 320, 711
TaqI TCGA 3 cut(s) 252, 282, 800
TasI AATT 1 cut(s) 766
TatI WGTACW 1 cut(s) 291
TauI GCSGC 6 cut(s) 77, 395, 413, 565, 613, 668
TscAI CASTG 3 cut(s) 39, 218, 265
TseFI GTSAC 6 cut(s) 12, 64, 94, 104, 220, 754
TseI GCWGC 4 cut(s) 176, 198, 276, 553
Tsp45I GTSAC 6 cut(s) 12, 64, 94, 104, 220, 754
TspDTI ATGAA 1 cut(s) 702
TspGWI ACGGA 3 cut(s) 500, 512, 713
TspRI CASTG 3 cut(s) 39, 218, 265
Van91I CCANNNNNTGG 1 cut(s) 769
VneI GTGCAC 1 cut(s) 454
ZraI GACGTC 3 cut(s) 148, 220, 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.