Rmu_co8004978.1_g000001

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8004978.1
OG0000222
Physical Location & Seq
Forward (+)
14 .. 529
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8004978.1_g000001.1.cds

Sequence Viewer

Length: 516 bp
atgacacagcccataccattaccactgcagaagctccacggcaaggtggccatcgtcaccggcgccgccagcggtatcggagcagtcacggcgcgtcactttgcagaccacggcgctctcgccatcgtgatcgctgacatccaagacgccaagggccgagaagtggctgcatccatcggctcccaccgctgcacctacgtccactgcgacgtcaccgacgaggatcaggtcaaaaccctggtcgagttcacggtcaagcactacggcagcctcgacgtcatgtacagcaacgtggggataaccagcgcgtcggcgcagacggtgctggagctcgacctgtccgggtacgacagggtgatggcggcgaacgcgcgggggatggcggcttgtgtgaagcacgcggcgcgtgtgatggtggagaagggggtgaaggggagcatagtgtgcgcgacgagcttctcggcggcctgcgggacggtgagcttgacggactacacgatgtcgaagcacgcggtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

172

Amino Acids

17.98

Weight (kDa)

7.07

Isoelectric Point (pI)

17.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 213, 279
AccB1I GGYRCC 1 cut(s) 62
AccII CGCG 8 cut(s) 94, 308, 371, 373, 401, 406, 449, 512
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 4 cut(s) 63, 147, 210, 276
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 2 cut(s) 284, 347
AfiI CCNNNNNNNGG 2 cut(s) 43, 163
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 4 cut(s) 34, 331, 456, 483
AluI AGCT 4 cut(s) 34, 331, 456, 483
Alw21I GWGCWC 1 cut(s) 333
AlwI GGATC 1 cut(s) 231
AoxI GGCC 3 cut(s) 48, 154, 465
ApeKI GCWGC 3 cut(s) 167, 189, 267
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspLEI GCGC 8 cut(s) 65, 94, 116, 308, 316, 373, 406, 449
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 5 cut(s) 49, 205, 367, 439, 490
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 3 cut(s) 154, 176, 279
BccI CCATC 6 cut(s) 59, 131, 182, 352, 373, 406
BceAI ACGGC 4 cut(s) 55, 105, 127, 280
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 2 cut(s) 66, 117
BisI GCNGC 8 cut(s) 66, 168, 190, 268, 363, 384, 402, 465
BlsI GCNGC 8 cut(s) 67, 169, 191, 269, 364, 385, 403, 466
Bme1390I CCNGG 2 cut(s) 239, 343
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 64, 181
BmrFI CCNGG 2 cut(s) 239, 343
BmsI GCATC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 343
BsaHI GRCGYC 4 cut(s) 63, 147, 210, 276
BsaJI CCNNGG 4 cut(s) 37, 109, 150, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 163
Bse118I RCCGGY 1 cut(s) 59
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 4 cut(s) 37, 109, 150, 237
BseGI GGATG 3 cut(s) 138, 170, 384
BseLI CCNNNNNNNGG 2 cut(s) 43, 163
BseXI GCAGC 3 cut(s) 154, 176, 279
BsgI GTGCAG 1 cut(s) 175
Bsh1236I CGCG 8 cut(s) 94, 308, 371, 373, 401, 406, 449, 512
BshFI GGCC 3 cut(s) 50, 156, 467
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 60, 342
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 43, 163
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 3 cut(s) 50, 156, 467
Bsp1286I GDGCHC 1 cut(s) 333
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 129, 223
BspANI GGCC 3 cut(s) 50, 156, 467
BspFNI CGCG 8 cut(s) 94, 308, 371, 373, 401, 406, 449, 512
BspLI GGNNCC 2 cut(s) 64, 181
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 37, 109, 150, 237
BssMI GATC 2 cut(s) 129, 223
BssNI GRCGYC 4 cut(s) 63, 147, 210, 276
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 253, 322, 478
BstACI GRCGYC 4 cut(s) 63, 147, 210, 276
BstAPI GCANNNNNTGC 2 cut(s) 322, 444
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 4 cut(s) 70, 399, 469, 510
BstDSI CCRYGG 2 cut(s) 37, 109
BstF5I GGATG 3 cut(s) 138, 170, 384
BstFNI CGCG 8 cut(s) 94, 308, 371, 373, 401, 406, 449, 512
BstH2I RGCGCY 2 cut(s) 66, 117
BstHHI GCGC 8 cut(s) 65, 94, 116, 308, 316, 373, 406, 449
BstKTI GATC 2 cut(s) 132, 226
BstMBI GATC 2 cut(s) 129, 223
BstMWI GCNNNNNNNGC 8 cut(s) 69, 89, 186, 322, 368, 403, 444, 453
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 237, 341
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 8 cut(s) 94, 308, 371, 373, 401, 406, 449, 512
BstV1I GCAGC 3 cut(s) 154, 176, 279
BsuRI GGCC 3 cut(s) 50, 156, 467
BtgI CCRYGG 2 cut(s) 37, 109
BtsCI GGATG 3 cut(s) 138, 170, 384
BtsI GCAGTG 2 cut(s) 23, 202
BtsIMutI CAGTG 2 cut(s) 23, 202
Cac8I GCNNGC 4 cut(s) 70, 399, 469, 510
CfoI GCGC 8 cut(s) 65, 94, 116, 308, 316, 373, 406, 449
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 3 cut(s) 83, 155, 297
Csp6I GTAC 2 cut(s) 283, 346
CviAII CATG 1 cut(s) 280
CviQI GTAC 2 cut(s) 283, 346
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 131, 225
DpnII GATC 2 cut(s) 129, 223
DraIII CACNNNGTG 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 333
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 283
FaiI YATR 3 cut(s) 14, 281, 440
FaqI GGGAC 1 cut(s) 487
FatI CATG 1 cut(s) 279
FauI CCCGC 2 cut(s) 366, 464
Fnu4HI GCNGC 8 cut(s) 66, 168, 190, 268, 363, 384, 402, 465
FokI GGATG 3 cut(s) 125, 157, 391
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 8 cut(s) 66, 168, 190, 268, 363, 384, 402, 465
GlaI GCGC 8 cut(s) 64, 93, 115, 307, 315, 372, 405, 448
GluI GCNGC 8 cut(s) 66, 168, 190, 268, 363, 384, 402, 465
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 2 cut(s) 66, 117
HaeIII GGCC 3 cut(s) 50, 156, 467
HapII CCGG 2 cut(s) 60, 342
HgaI GACGC 3 cut(s) 83, 155, 297
HhaI GCGC 8 cut(s) 65, 94, 116, 308, 316, 373, 406, 449
Hin1I GRCGYC 4 cut(s) 63, 147, 210, 276
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 8 cut(s) 63, 92, 114, 306, 314, 371, 404, 447
HinP1I GCGC 8 cut(s) 63, 92, 114, 306, 314, 371, 404, 447
HpaII CCGG 2 cut(s) 60, 342
HphI GGTGA 5 cut(s) 49, 205, 367, 439, 490
Hpy166II GTNNAC 2 cut(s) 202, 249
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 2 cut(s) 202, 249
Hpy99I CGWCG 5 cut(s) 212, 221, 278, 313, 454
HpyAV CCTTC 2 cut(s) 415, 424
HpyCH4III ACNGT 3 cut(s) 253, 322, 478
HpyCH4IV ACGT 4 cut(s) 198, 210, 276, 291
HpyCH4V TGCA 4 cut(s) 28, 104, 170, 192
HpyF10VI GCNNNNNNNGC 8 cut(s) 69, 89, 186, 322, 368, 403, 444, 453
HpySE526I ACGT 4 cut(s) 198, 210, 276, 291
Hsp92I GRCGYC 4 cut(s) 63, 147, 210, 276
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 8 cut(s) 63, 92, 114, 306, 314, 371, 404, 447
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 129, 223
LmnI GCTCC 5 cut(s) 39, 80, 185, 328, 435
Lsp1109I GCAGC 3 cut(s) 154, 176, 279
LweI GCATC 1 cut(s) 179
MaeII ACGT 4 cut(s) 198, 210, 276, 291
MaeIII GTNAC 4 cut(s) 55, 85, 95, 211
MalI GATC 2 cut(s) 131, 225
MboI GATC 2 cut(s) 129, 223
MhlI GDGCHC 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 2 cut(s) 214, 281
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 2 cut(s) 72, 189
MspI CCGG 2 cut(s) 60, 342
MspR9I CCNGG 2 cut(s) 239, 343
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 8 cut(s) 94, 308, 371, 373, 401, 406, 449, 512
MwoI GCNNNNNNNGC 8 cut(s) 69, 89, 186, 322, 368, 403, 444, 453
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 343
NdeII GATC 2 cut(s) 129, 223
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 2 cut(s) 64, 181
NmeAIII GCCGAG 2 cut(s) 182, 440
NmuCI GTSAC 4 cut(s) 55, 85, 95, 211
PcsI WCGNNNNNNNCGW 4 cut(s) 204, 216, 270, 494
PkrI GCNGC 8 cut(s) 67, 169, 191, 269, 364, 385, 403, 466
PluTI GGCGCC 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 64, 181
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 1 cut(s) 30
RsaI GTAC 2 cut(s) 284, 347
RsaNI GTAC 2 cut(s) 283, 346
SacI GAGCTC 1 cut(s) 333
SatI GCNGC 8 cut(s) 66, 168, 190, 268, 363, 384, 402, 465
Sau3AI GATC 2 cut(s) 129, 223
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 239, 343
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 26
SfoI GGCGCC 1 cut(s) 64
SgrAI CRCCGGYG 1 cut(s) 59
SspDI GGCGCC 1 cut(s) 62
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 237, 341
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 253, 322, 478
TaiI ACGT 4 cut(s) 201, 213, 279, 294
TaqI TCGA 4 cut(s) 243, 273, 333, 503
TatI WGTACW 1 cut(s) 282
TauI GCSGC 5 cut(s) 68, 365, 386, 404, 467
TscAI CASTG 2 cut(s) 30, 209
TseFI GTSAC 4 cut(s) 55, 85, 95, 211
TseI GCWGC 3 cut(s) 167, 189, 267
Tsp45I GTSAC 4 cut(s) 55, 85, 95, 211
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 30, 209
ZraI GACGTC 2 cut(s) 211, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.