Rorug07G0313400

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000222
Physical Location & Seq
Forward (+)
31472637 .. 31473254
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0313400.1

Sequence Viewer

Length: 486 bp
ATGGAAGTTCCCAAATTTCTCATTCTTTTACTGTTTGCAGCAACGGTTGCTTGGACTCAAGCGCGGTCACTAGGGTTGCAAAACCTAAGGCAAGGGAGCTCCTTGAAAGTCGAGGAAGAGAGTGACTTCTTAGTTTCACCAAATGGAACTTTTTCCAGTGGATTTTACAACGTCAGCACCAATTCCTCCTGCTATTCAGTATGGTACACCAACACTATCAACAAAACAGTTGTCTGGATGGCTAACAGAGATACACCTGTCAGCATTAGACAGTCGAAGTTAGCCCTCCGCAGAAATGGCAACCTGGTCTTGACTGATGGAGTTGGTTCAACTGTATGGTCAACCAACACTTTGTCTAATGCAAGCATGGAGTTTCATCTTCGACTTCTTGAAACAGGAAACTTGGTGCTGATCAACCAAGCAGAGAGGATCATCTGGCAGAGTTTTGATTCTCCCACAGATACACTTTTACCATCTCCGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

161

Amino Acids

17.89

Weight (kDa)

6.57

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 159 9e-27 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 64, 289
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 3 cut(s) 106, 330, 392
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 2 cut(s) 99, 483
AluI AGCT 2 cut(s) 99, 483
Alw21I GWGCWC 1 cut(s) 101
AlwI GGATC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 14
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 129
AxyI CCTNAGG 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 50
BccI CCATC 3 cut(s) 232, 311, 481
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 411
BfaI CTAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 305
BpuEI CTTGAG 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 156
Bse21I CCTNAGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 411, 429
BspACI CCGC 2 cut(s) 64, 289
BspFNI CGCG 1 cut(s) 64
BspPI GGATC 1 cut(s) 437
BsrI ACTGG 1 cut(s) 156
BssMI GATC 2 cut(s) 411, 429
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 5 cut(s) 33, 46, 229, 273, 334
Bst6I CTCTTC 1 cut(s) 111
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 2 cut(s) 86, 130
BstF5I GGATG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 414, 432
BstMBI GATC 2 cut(s) 411, 429
BstMWI GCNNNNNNNGC 2 cut(s) 47, 297
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 50
Bsu36I CCTNAGG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 1 cut(s) 64
CsiI ACCWGGT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 367
CviJI RGCY 4 cut(s) 99, 242, 284, 483
CviKI_1 RGCY 4 cut(s) 99, 242, 284, 483
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 86, 130
DpnI GATC 2 cut(s) 413, 431
DpnII GATC 2 cut(s) 411, 429
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 1 cut(s) 370
FaiI YATR 3 cut(s) 202, 337, 368
FatI CATG 1 cut(s) 366
FbaI TGATCA 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 1 cut(s) 250
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 64
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 2 cut(s) 55, 449
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 207, 342
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 3 cut(s) 235, 310, 389
Hpy8I GTNNAC 2 cut(s) 207, 342
HpyCH4III ACNGT 5 cut(s) 33, 46, 229, 273, 334
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 38, 79, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 297
HpyF3I CTNAG 2 cut(s) 86, 130
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 2 cut(s) 411, 429
LmnI GCTCC 2 cut(s) 96, 104
LpnPI CCDG 8 cut(s) 169, 202, 220, 270, 290, 317, 381, 421
Lsp1109I GCAGC 1 cut(s) 50
MabI ACCWGGT 1 cut(s) 303
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 66, 122
MalI GATC 2 cut(s) 413, 431
MboI GATC 2 cut(s) 411, 429
MboII GAAGA 2 cut(s) 128, 371
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 14, 181
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 4 cut(s) 106, 196, 296, 420
MroXI GAANNNNTTC 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 47, 297
NdeII GATC 2 cut(s) 411, 429
NlaIII CATG 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 66, 122
PdmI GAANNNNTTC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 1 cut(s) 101
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 411, 429
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 101
SetI ASST 6 cut(s) 87, 101, 174, 259, 306, 485
SexAI ACCWGGT 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 2 cut(s) 14, 181
SsiI CCGC 2 cut(s) 64, 289
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 5 cut(s) 33, 46, 229, 273, 334
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 111, 275, 382
TasI AATT 2 cut(s) 14, 181
TfiI GAWTC 1 cut(s) 449
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 2 cut(s) 66, 122
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 66, 122
TspDTI ATGAA 1 cut(s) 365
TspRI CASTG 1 cut(s) 163
XapI RAATTY 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 151
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.