Rorug07G0314100

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000222
Physical Location & Seq
Reverse (-)
31546180 .. 31547938
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0314100.1

Sequence Viewer

Length: 291 bp
ATGCATCTGCTACAGCTTATGACATCATGGGCAGTTGTTTGTGATGTGTGGTATTTGGAGTCCGAAAATATCAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTCTTCGAGCAGGACTTAAGAAGGTCCCGTGGGATGGGTATCTTTACTTGCATTTGCAATCTTTACTTGCATTTTATATACAGAAGCCGCACATTATCATGGAGCTTATTAGTAATCTTCTCTTTGCAGACAACAAAGTTTTGCCTAGTCTATGCTTCGACGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

96

Amino Acids

11.11

Weight (kDa)

5.46

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 158
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 16, 229
AluI AGCT 2 cut(s) 16, 229
Alw26I GTCTC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 270, 289
BfmI CTRYAG 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 77, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 77, 152
BseGI GGATG 1 cut(s) 163
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 158
BslFI GGGAC 2 cut(s) 128, 134
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 128, 134
BspACI CCGC 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 77, 152
BssNI GRCGYC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 148
CviAII CATG 2 cut(s) 27, 223
CviJI RGCY 4 cut(s) 16, 76, 211, 229
CviKI_1 RGCY 4 cut(s) 16, 76, 211, 229
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 30, 226
FaiI YATR 7 cut(s) 20, 28, 119, 201, 203, 224, 277
FaqI GGGAC 2 cut(s) 128, 134
FatI CATG 2 cut(s) 26, 222
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 2 cut(s) 270, 289
GluI GCNGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 2 cut(s) 30, 226
HinfI GANTC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 6 cut(s) 4, 101, 175, 181, 194, 251
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 30, 226
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 63, 90, 97, 120
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 270, 289
MboII GAAGA 2 cut(s) 119, 233
MluCI AATT 2 cut(s) 95, 120
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
NlaIII CATG 2 cut(s) 30, 226
NlaIV GGNNCC 1 cut(s) 150
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 148
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 78
SetI ASST 3 cut(s) 18, 150, 231
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 95, 120
SsiI CCGC 1 cut(s) 212
SspMI CTAG 2 cut(s) 270, 289
StyD4I CCNGG 1 cut(s) 76
TaqI TCGA 2 cut(s) 130, 282
TasI AATT 2 cut(s) 95, 120
TauI GCSGC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 95
XspI CTAG 2 cut(s) 270, 289
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.