Rroxscaffold_3G00222910

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000222
Physical Location & Seq
Reverse (-)
5949806 .. 5991906
42101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222910.1

Sequence Viewer

Length: 870 bp
ATGACACAGCCCATACCAGTACCACTGCAGAAGCTCCACGGCAAGGTGGCCATCGTCACCGGCGCCGCAAGCGGTATCGGAGCAGTCACGGTGTTTCACTTTGCAGACCACGGAGCTCTCGCCGTCGTGATAGCTGACGTCCAAGACGCCAAGGGCCGAGAAGTGGCTGCATCCATCGGCTCCCACCGCTGCACCTACGTCCACTGCGACGTCACCGACGAGGATCAGGTCAAGTCTCTGGTCGAGTTCACGGTCAAGCACTACGGAAGTCTTGACGTCATGTATAGCAACGCTGGGATAACCAGCTCGTCGGCGCAGACGGTGCTGGAGCTTGACCTGTCCGGGTACGACAGAGTGATGGCGGTGAACGCGCGCGGAATGGCTGCGTGTGTGAAGCACGCGGCGCTTGCGATGGTAGAGAAGGGGGTGAAGGGGTGCATAGTGTGCACGGCGAGCTTCGCGGCGGACTGTGGGATGGAGAGCTTGACGGACTACACGATGTCGAAGCACGCGGTGCTGGGGCTGGTGAGGTCAGCGAGCGTGCAGCTAGCGCGGCGTGGTGTGCGCGTGAACTGCGTGTCGCCGGGTATGGTGGCGACGCCGCTGATGTGCGACATATTGAAGATTAGTGAGGAAGAGCTGCAGGAGACGATGGCGGTGGTTTATTCGGGAAGGGATGAACCGCTGATGGAGAAGCACCAGGAGAAAATGGCGGCGATTTATTCGGGAAGGGATGAACCGCTGATGGAGAAAAACGTGGCGGATGCGGTGGTGTTTTTGGCTTGTGAGGACTCGGCGTTCGTCACCGGCCATAATTTGGTAGTTGATGGTGGACTTGGCACCAAGTCCATAGCTATATTGGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

289

Amino Acids

30.62

Weight (kDa)

5.44

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 203 1.8e-45 short chain dehydrogenase
KR PF08659 18 - 178 1.4e-07 KR domain
adh_short_C2 PF13561 21 - 279 1.9e-51 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 141, 213, 279
AccB1I GGYRCC 2 cut(s) 62, 839
AccB7I CCANNNNNTGG 1 cut(s) 817
AccII CGCG 8 cut(s) 371, 373, 375, 401, 461, 512, 553, 567
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 48, 808
AcyI GRCGYC 6 cut(s) 63, 138, 147, 210, 276, 599
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 2 cut(s) 21, 347
AfiI CCNNNNNNNGG 3 cut(s) 43, 163, 817
AgsI TTSAA 1 cut(s) 622
AjnI CCWGG 1 cut(s) 699
AloI GAACNNNNNNTCC 2 cut(s) 782, 814
Alw21I GWGCWC 2 cut(s) 118, 449
Alw26I GTCTC 2 cut(s) 240, 641
Alw44I GTGCAC 1 cut(s) 445
AlwI GGATC 1 cut(s) 231
AoxI GGCC 3 cut(s) 48, 154, 808
ApaLI GTGCAC 1 cut(s) 445
ApeKI GCWGC 5 cut(s) 167, 189, 383, 544, 640
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AspLEI GCGC 7 cut(s) 65, 316, 373, 375, 406, 553, 567
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 2 cut(s) 343, 585
AsuHPI GGTGA 6 cut(s) 49, 205, 376, 439, 538, 796
AsuNHI GCTAGC 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 2 cut(s) 62, 839
BanII GRGCYC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 118, 449
BbvI GCAGC 5 cut(s) 154, 176, 370, 556, 627
BccI CCATC 9 cut(s) 59, 182, 352, 406, 469, 646, 682, 739, 821
BceAI ACGGC 3 cut(s) 55, 107, 465
BciT130I CCWGG 1 cut(s) 701
BcnI CCSGG 2 cut(s) 343, 585
BcoDI GTCTC 2 cut(s) 240, 641
BfaI CTAG 1 cut(s) 548
BfmI CTRYAG 2 cut(s) 26, 641
BfoI RGCGCY 2 cut(s) 66, 407
Bme1390I CCNGG 3 cut(s) 343, 585, 701
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 3 cut(s) 64, 181, 841
BmrFI CCNGG 3 cut(s) 343, 585, 701
BmsI GCATC 2 cut(s) 179, 754
BmtI GCTAGC 1 cut(s) 551
BpmI CTGGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 343, 585
BsaHI GRCGYC 6 cut(s) 63, 138, 147, 210, 276, 599
BsaJI CCNNGG 3 cut(s) 37, 109, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 163, 817
Bse118I RCCGGY 2 cut(s) 59, 806
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 3 cut(s) 37, 109, 150
BseGI GGATG 5 cut(s) 170, 480, 682, 739, 769
BseLI CCNNNNNNNGG 3 cut(s) 43, 163, 817
BseNI ACTGG 1 cut(s) 17
BsePI GCGCGC 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 5 cut(s) 154, 176, 370, 556, 627
BseYI CCCAGC 2 cut(s) 293, 517
BsgI GTGCAG 2 cut(s) 175, 563
Bsh1236I CGCG 8 cut(s) 371, 373, 375, 401, 461, 512, 553, 567
BshFI GGCC 3 cut(s) 50, 156, 810
BshNI GGYRCC 2 cut(s) 62, 839
BsiHKAI GWGCWC 2 cut(s) 118, 449
BsiSI CCGG 4 cut(s) 60, 342, 584, 807
BslI CCNNNNNNNGG 3 cut(s) 43, 163, 817
BsmAI GTCTC 2 cut(s) 240, 641
BsmBI CGTCTC 1 cut(s) 641
BsnI GGCC 3 cut(s) 50, 156, 810
Bsp1286I GDGCHC 2 cut(s) 118, 449
Bsp143I GATC 1 cut(s) 223
BspANI GGCC 3 cut(s) 50, 156, 810
BspFNI CGCG 8 cut(s) 371, 373, 375, 401, 461, 512, 553, 567
BspLI GGNNCC 3 cut(s) 64, 181, 841
BspMAI CTGCAG 2 cut(s) 30, 645
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 630
BspT107I GGYRCC 2 cut(s) 62, 839
BsrFI RCCGGY 2 cut(s) 59, 806
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 2 cut(s) 59, 806
BssECI CCNNGG 3 cut(s) 37, 109, 150
BssHII GCGCGC 1 cut(s) 371
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 6 cut(s) 63, 138, 147, 210, 276, 599
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 701
Bst4CI ACNGT 4 cut(s) 91, 253, 322, 470
Bst6I CTCTTC 1 cut(s) 630
BstACI GRCGYC 6 cut(s) 63, 138, 147, 210, 276, 599
BstAPI GCANNNNNTGC 3 cut(s) 322, 444, 514
BstC8I GCNNGC 9 cut(s) 70, 373, 399, 408, 454, 510, 538, 542, 549
BstDSI CCRYGG 2 cut(s) 37, 109
BstF5I GGATG 5 cut(s) 170, 480, 682, 739, 769
BstFNI CGCG 8 cut(s) 371, 373, 375, 401, 461, 512, 553, 567
BstH2I RGCGCY 2 cut(s) 66, 407
BstHHI GCGC 7 cut(s) 65, 316, 373, 375, 406, 553, 567
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 240, 641
BstMBI GATC 1 cut(s) 223
BstNI CCWGG 1 cut(s) 701
BstSCI CCNGG 3 cut(s) 341, 583, 699
BstSFI CTRYAG 2 cut(s) 26, 641
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 8 cut(s) 371, 373, 375, 401, 461, 512, 553, 567
BstV1I GCAGC 5 cut(s) 154, 176, 370, 556, 627
BsuRI GGCC 3 cut(s) 50, 156, 810
BtgI CCRYGG 2 cut(s) 37, 109
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 5 cut(s) 170, 480, 682, 739, 769
BtsI GCAGTG 2 cut(s) 23, 202
BtsIMutI CAGTG 2 cut(s) 23, 202
Cac8I GCNNGC 9 cut(s) 70, 373, 399, 408, 454, 510, 538, 542, 549
CfoI GCGC 7 cut(s) 65, 316, 373, 375, 406, 553, 567
Cfr10I RCCGGY 2 cut(s) 59, 806
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 2 cut(s) 155, 607
Csp6I GTAC 2 cut(s) 20, 346
CviAII CATG 1 cut(s) 280
CviQI GTAC 2 cut(s) 20, 346
DinI GGCGCC 1 cut(s) 64
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 514
EaeI YGGCCR 2 cut(s) 48, 808
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 2 cut(s) 479, 776
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 118
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 150
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 1 cut(s) 283
FaiI YATR 9 cut(s) 14, 281, 285, 440, 590, 617, 813, 851, 857
FatI CATG 1 cut(s) 279
FokI GGATG 5 cut(s) 157, 487, 689, 746, 776
FriOI GRGCYC 1 cut(s) 118
FspBI CTAG 1 cut(s) 548
GlaI GCGC 7 cut(s) 64, 315, 372, 374, 405, 552, 566
GsaI CCCAGC 2 cut(s) 297, 521
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 2 cut(s) 66, 407
HaeIII GGCC 3 cut(s) 50, 156, 810
HapII CCGG 4 cut(s) 60, 342, 584, 807
HgaI GACGC 2 cut(s) 155, 607
HhaI GCGC 7 cut(s) 65, 316, 373, 375, 406, 553, 567
Hin1I GRCGYC 6 cut(s) 63, 138, 147, 210, 276, 599
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 7 cut(s) 63, 314, 371, 373, 404, 551, 565
HinP1I GCGC 7 cut(s) 63, 314, 371, 373, 404, 551, 565
HinfI GANTC 1 cut(s) 791
HpaII CCGG 4 cut(s) 60, 342, 584, 807
HphI GGTGA 6 cut(s) 49, 205, 376, 439, 538, 796
Hpy166II GTNNAC 6 cut(s) 202, 249, 367, 447, 571, 833
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 127, 272, 669, 726
Hpy8I GTNNAC 6 cut(s) 202, 249, 367, 447, 571, 833
Hpy99I CGWCG 5 cut(s) 128, 212, 221, 313, 601
HpyAV CCTTC 4 cut(s) 415, 424, 666, 723
HpyCH4III ACNGT 4 cut(s) 91, 253, 322, 470
HpyCH4IV ACGT 5 cut(s) 138, 198, 210, 276, 756
HpyCH4V TGCA 8 cut(s) 28, 104, 170, 192, 438, 447, 544, 643
HpySE526I ACGT 5 cut(s) 138, 198, 210, 276, 756
Hsp92I GRCGYC 6 cut(s) 63, 138, 147, 210, 276, 599
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 7 cut(s) 63, 314, 371, 373, 404, 551, 565
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 5 cut(s) 39, 80, 113, 185, 328
Lsp1109I GCAGC 5 cut(s) 154, 176, 370, 556, 627
LweI GCATC 2 cut(s) 179, 754
MaeI CTAG 1 cut(s) 548
MaeII ACGT 5 cut(s) 138, 198, 210, 276, 756
MaeIII GTNAC 4 cut(s) 55, 85, 211, 802
MalI GATC 1 cut(s) 225
MauBI CGCGCGCG 1 cut(s) 371
MboI GATC 1 cut(s) 223
MboII GAAGA 2 cut(s) 634, 647
MhlI GDGCHC 2 cut(s) 118, 449
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 1 cut(s) 814
MluNI TGGCCA 1 cut(s) 50
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 785
MnlI CCTC 4 cut(s) 214, 522, 625, 781
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 4 cut(s) 189, 604, 685, 742
MspI CCGG 4 cut(s) 60, 342, 584, 807
MspR9I CCNGG 3 cut(s) 343, 585, 701
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 8 cut(s) 371, 373, 375, 401, 461, 512, 553, 567
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 2 cut(s) 343, 585
NdeII GATC 1 cut(s) 223
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 3 cut(s) 64, 181, 841
NmeAIII GCCGAG 2 cut(s) 182, 773
NmuCI GTSAC 4 cut(s) 55, 85, 211, 802
PauI GCGCGC 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 216, 494
PflMI CCANNNNNTGG 1 cut(s) 817
PleI GAGTC 1 cut(s) 785
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 785
Psp124BI GAGCTC 1 cut(s) 118
Psp6I CCWGG 1 cut(s) 699
PspFI CCCAGC 2 cut(s) 293, 517
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 3 cut(s) 64, 181, 841
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 2 cut(s) 30, 645
PteI GCGCGC 1 cut(s) 371
RsaI GTAC 2 cut(s) 21, 347
RsaNI GTAC 2 cut(s) 20, 346
SacI GAGCTC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 630
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 3 cut(s) 343, 585, 701
SduI GDGCHC 2 cut(s) 118, 449
SfaNI GCATC 2 cut(s) 179, 754
SfcI CTRYAG 2 cut(s) 26, 641
SfoI GGCGCC 1 cut(s) 64
SgrAI CRCCGGYG 1 cut(s) 59
Sse9I AATT 1 cut(s) 814
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 548
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 341, 583, 699
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 4 cut(s) 91, 253, 322, 470
TaiI ACGT 5 cut(s) 141, 201, 213, 279, 759
TaqI TCGA 2 cut(s) 243, 503
TasI AATT 1 cut(s) 814
TauI GCSGC 6 cut(s) 68, 404, 464, 556, 604, 716
TscAI CASTG 2 cut(s) 30, 209
TseFI GTSAC 4 cut(s) 55, 85, 211, 802
TseI GCWGC 5 cut(s) 167, 189, 383, 544, 640
Tsp45I GTSAC 4 cut(s) 55, 85, 211, 802
TspDTI ATGAA 2 cut(s) 693, 750
TspGWI ACGGA 3 cut(s) 126, 279, 503
TspRI CASTG 2 cut(s) 30, 209
Van91I CCANNNNNTGG 1 cut(s) 817
VneI GTGCAC 1 cut(s) 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XspI CTAG 1 cut(s) 548
ZraI GACGTC 3 cut(s) 139, 211, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.