Rmu_sc0000429.1_g000017

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000429.1
OG0000222
Physical Location & Seq
Forward (+)
76136 .. 76699
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000429.1_g000017.1.cds

Sequence Viewer

Length: 351 bp
atgaatgagcagcacatacaactccagaagctccacggcaaggtggccatagtcaccggcaccgccagcggcatcgatgcagtcaccgtgcgccactttgccgaccacagaactcacgtcatcgtgatcgccaacgtccaagacgccaagggccgagaaatggccatatccatcgacttccactgctgcacctacatccactgtgacgtcaccgatgaggaccaggttgaatcgctagtcgtctccaccgtcaaaaaagtgtgggactgtgggcgtgacgggctacacgatgtcgaagcacgcagtgttggtgctagtgccatcgacaagcgtgtatctggcggcgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

6.01

Isoelectric Point (pI)

22.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 347
AciI CCGC 3 cut(s) 63, 69, 342
AcoI YGGCCR 2 cut(s) 45, 162
AcyI GRCGYC 2 cut(s) 144, 207
AdeI CACNNNGTG 1 cut(s) 305
AfiI CCNNNNNNNGG 2 cut(s) 40, 160
AgsI TTSAA 1 cut(s) 230
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 247
AoxI GGCC 3 cut(s) 45, 151, 162
ApeKI GCWGC 2 cut(s) 10, 186
AspLEI GCGC 2 cut(s) 93, 347
AspS9I GGNCC 2 cut(s) 151, 220
AsuHPI GGTGA 3 cut(s) 46, 76, 202
AvaII GGWCC 1 cut(s) 220
BalI TGGCCA 2 cut(s) 47, 164
BanI GGYRCC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 22, 173
BccI CCATC 2 cut(s) 179, 329
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 247
BfaI CTAG 2 cut(s) 236, 315
BisI GCNGC 4 cut(s) 11, 70, 187, 343
BlsI GCNGC 4 cut(s) 12, 71, 188, 344
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 151, 220
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 67, 81
BpmI CTGGAG 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 75
BsaHI GRCGYC 2 cut(s) 144, 207
BsaJI CCNNGG 2 cut(s) 34, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 160
Bse118I RCCGGY 1 cut(s) 56
BseBI CCWGG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 75
BseDI CCNNGG 2 cut(s) 34, 147
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 40, 160
BseXI GCAGC 2 cut(s) 22, 173
BsgI GTGCAG 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 3 cut(s) 47, 153, 164
BshNI GGYRCC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 75
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 40, 160
BsmAI GTCTC 1 cut(s) 247
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 3 cut(s) 47, 153, 164
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 3 cut(s) 63, 69, 342
BspANI GGCC 3 cut(s) 47, 153, 164
BspDI ATCGAT 1 cut(s) 75
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 59
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 34, 147
BssMI GATC 1 cut(s) 126
BssNI GRCGYC 2 cut(s) 144, 207
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 4 cut(s) 88, 203, 250, 269
BstACI GRCGYC 2 cut(s) 144, 207
BstC8I GCNNGC 2 cut(s) 67, 301
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 195
BstFNI CGCG 1 cut(s) 347
BstHHI GCGC 2 cut(s) 93, 347
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 66, 280
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 2 cut(s) 22, 173
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 3 cut(s) 47, 153, 164
BsuTUI ATCGAT 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 195
BtsI GCAGTG 2 cut(s) 181, 310
BtsIMutI CAGTG 3 cut(s) 181, 199, 310
Cac8I GCNNGC 2 cut(s) 67, 301
CfoI GCGC 2 cut(s) 93, 347
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 151, 220
ClaI ATCGAT 1 cut(s) 75
CseI GACGC 1 cut(s) 152
CsiI ACCWGGT 1 cut(s) 222
CviJI RGCY 5 cut(s) 31, 47, 153, 164, 283
CviKI_1 RGCY 5 cut(s) 31, 47, 153, 164, 283
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DraIII CACNNNGTG 1 cut(s) 305
EaeI YGGCCR 2 cut(s) 45, 162
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 247
FaiI YATR 3 cut(s) 17, 50, 167
FaqI GGGAC 1 cut(s) 278
Fnu4HI GCNGC 4 cut(s) 11, 70, 187, 343
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 11, 70, 187, 343
FspBI CTAG 2 cut(s) 236, 315
GlaI GCGC 2 cut(s) 92, 346
GluI GCNGC 4 cut(s) 11, 70, 187, 343
GsuI CTGGAG 1 cut(s) 8
HaeIII GGCC 3 cut(s) 47, 153, 164
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 152
HhaI GCGC 2 cut(s) 93, 347
Hin1I GRCGYC 2 cut(s) 144, 207
Hin6I GCGC 2 cut(s) 91, 345
HinP1I GCGC 2 cut(s) 91, 345
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 57
HphI GGTGA 3 cut(s) 46, 76, 202
Hpy188III TCNNGA 2 cut(s) 25, 124
HpyCH4III ACNGT 4 cut(s) 88, 203, 250, 269
HpyCH4IV ACGT 3 cut(s) 117, 135, 207
HpyCH4V TGCA 2 cut(s) 80, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 280
HpySE526I ACGT 3 cut(s) 117, 135, 207
Hsp92I GRCGYC 2 cut(s) 144, 207
HspAI GCGC 2 cut(s) 91, 345
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 6 cut(s) 38, 70, 79, 209, 236, 324
Lsp1109I GCAGC 2 cut(s) 22, 173
LweI GCATC 2 cut(s) 67, 81
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 2 cut(s) 236, 315
MaeII ACGT 3 cut(s) 117, 135, 207
MaeIII GTNAC 5 cut(s) 52, 82, 203, 208, 275
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MlsI TGGCCA 2 cut(s) 47, 164
MluNI TGGCCA 2 cut(s) 47, 164
MnlI CCTC 1 cut(s) 211
Mox20I TGGCCA 2 cut(s) 47, 164
MscI TGGCCA 2 cut(s) 47, 164
Msp20I TGGCCA 2 cut(s) 47, 164
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 66, 280
NdeII GATC 1 cut(s) 126
NlaIV GGNNCC 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 179
NmuCI GTSAC 5 cut(s) 52, 82, 203, 208, 275
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 285
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 4 cut(s) 12, 71, 188, 344
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 151, 220
SatI GCNGC 4 cut(s) 11, 70, 187, 343
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 151, 220
ScrFI CCNGG 1 cut(s) 224
SetI ASST 7 cut(s) 33, 45, 120, 138, 194, 210, 228
SexAI ACCWGGT 1 cut(s) 222
SfaNI GCATC 2 cut(s) 67, 81
SinI GGWCC 1 cut(s) 220
SsiI CCGC 3 cut(s) 63, 69, 342
SspMI CTAG 2 cut(s) 236, 315
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 4 cut(s) 88, 203, 250, 269
TaiI ACGT 3 cut(s) 120, 138, 210
TaqI TCGA 4 cut(s) 75, 174, 294, 324
TauI GCSGC 2 cut(s) 72, 345
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 3 cut(s) 188, 206, 310
TseFI GTSAC 5 cut(s) 52, 82, 203, 208, 275
TseI GCWGC 2 cut(s) 10, 186
Tsp45I GTSAC 5 cut(s) 52, 82, 203, 208, 275
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 188, 206, 310
VpaK11BI GGWCC 1 cut(s) 220
XspI CTAG 2 cut(s) 236, 315
ZraI GACGTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.