Rh7DG454600

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000222
Physical Location & Seq
Forward (+)
64706297 .. 64706755
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG454600.1

Sequence Viewer

Length: 459 bp
ATGGAGGTGAACGTCCGGGGGATGGCGGCGTGTGTGAAGCACGCAGCGCGTGCGATGGTGGGGAAGGGAGTCAGAGGCAGCATAGTGTGCACGGCTAGCATAGTGGCGGAGTATGGGACGGAGAGCGCGACGGACTACACGATGTCGAAGCACGCGGTGCTGGGGCTGGTGCGGTCGGCAAGCGTGCAGCTGGCGGCGCGTGGGGTGCGCGTGAACTGCGTGTCTCCGGGTTTGGTGGGGACGCCGATGGTGAGCGAGACTCTTAAGCTTGGGGCGGAAGAGATGAAGGAGATGATGACAGCGGTTTATTCGGAAAGCAGCAATGGGCCGCTGATGGAGAAACACGTGGCGGATGCGGTGGCGTTTTTGGCGTCGGAGGACTCGGCGTTCGTCACCGGCCATAATTTGGTGGTTGATGGCGGATTTGGCACCAAGTCCTCATCAGTACTCAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

152

Amino Acids

15.72

Weight (kDa)

6.9

Isoelectric Point (pI)

25.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 142 1.4e-34 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 1 - 87 5.4e-20 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 406
AccII CGCG 5 cut(s) 49, 128, 155, 199, 210
AcoI YGGCCR 1 cut(s) 397
AcvI CACGTG 1 cut(s) 346
AcyI GRCGYC 2 cut(s) 242, 371
AdeI CACNNNGTG 1 cut(s) 157
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 2 cut(s) 22, 406
AflII CTTAAG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 343
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 2 cut(s) 190, 268
AluI AGCT 2 cut(s) 190, 268
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 2 cut(s) 228, 251
Alw44I GTGCAC 1 cut(s) 88
AoxI GGCC 2 cut(s) 326, 397
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 4 cut(s) 44, 78, 187, 318
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspLEI GCGC 4 cut(s) 49, 128, 199, 210
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 2 cut(s) 17, 228
AsuHPI GGTGA 3 cut(s) 19, 262, 385
AsuNHI GCTAGC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 428
BbrPI CACGTG 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 56, 90, 199, 330
BccI CCATC 5 cut(s) 16, 49, 241, 328, 410
BceAI ACGGC 1 cut(s) 108
BcnI CCSGG 2 cut(s) 17, 228
BcoDI GTCTC 2 cut(s) 228, 251
BfaI CTAG 1 cut(s) 96
BfrI CTTAAG 1 cut(s) 263
BisI GCNGC 7 cut(s) 27, 45, 79, 188, 195, 319, 329
BlsI GCNGC 7 cut(s) 28, 46, 80, 189, 196, 320, 330
BmcAI AGTACT 1 cut(s) 447
Bme1390I CCNGG 2 cut(s) 17, 228
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 17, 228
BmsI GCATC 1 cut(s) 343
BmtI GCTAGC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpuMI CCSGG 2 cut(s) 17, 228
BsaAI YACGTR 1 cut(s) 346
BsaHI GRCGYC 2 cut(s) 242, 371
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 406
Bse118I RCCGGY 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 2 cut(s) 27, 358
BseLI CCNNNNNNNGG 2 cut(s) 22, 406
BseMI GCAATG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 4 cut(s) 56, 90, 199, 330
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 206
Bsh1236I CGCG 5 cut(s) 49, 128, 155, 199, 210
Bsh1285I CGRYCG 1 cut(s) 176
BshFI GGCC 2 cut(s) 328, 399
BshNI GGYRCC 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 176
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 3 cut(s) 16, 227, 396
BslFI GGGAC 2 cut(s) 130, 253
BslI CCNNNNNNNGG 2 cut(s) 22, 406
BsmAI GTCTC 2 cut(s) 228, 251
BsmFI GGGAC 2 cut(s) 130, 253
BsnI GGCC 2 cut(s) 328, 399
Bsp1286I GDGCHC 1 cut(s) 92
BspANI GGCC 2 cut(s) 328, 399
BspFNI CGCG 5 cut(s) 49, 128, 155, 199, 210
BspLI GGNNCC 1 cut(s) 430
BspOI GCTAGC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 428
BspTI CTTAAG 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 1 cut(s) 16
BssNI GRCGYC 2 cut(s) 242, 371
Bst6I CTCTTC 1 cut(s) 273
BstACI GRCGYC 2 cut(s) 242, 371
BstAFI CTTAAG 1 cut(s) 263
BstAPI GCANNNNNTGC 3 cut(s) 50, 87, 157
BstBAI YACGTR 1 cut(s) 346
BstC8I GCNNGC 7 cut(s) 42, 51, 97, 153, 181, 185, 192
BstF5I GGATG 2 cut(s) 27, 358
BstFNI CGCG 5 cut(s) 49, 128, 155, 199, 210
BstHHI GCGC 4 cut(s) 49, 128, 199, 210
BstMAI GTCTC 2 cut(s) 228, 251
BstMCI CGRYCG 1 cut(s) 176
BstSCI CCNGG 2 cut(s) 15, 226
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 5 cut(s) 49, 128, 155, 199, 210
BstV1I GCAGC 4 cut(s) 56, 90, 199, 330
BsuRI GGCC 2 cut(s) 328, 399
BtgZI GCGATG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 27, 358
Cac8I GCNNGC 7 cut(s) 42, 51, 97, 153, 181, 185, 192
CfoI GCGC 4 cut(s) 49, 128, 199, 210
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 326
CseI GACGC 2 cut(s) 250, 360
Csp6I GTAC 1 cut(s) 446
CviAII CATG 1 cut(s) 456
CviJI RGCY 6 cut(s) 95, 166, 190, 268, 328, 399
CviKI_1 RGCY 6 cut(s) 95, 166, 190, 268, 328, 399
CviQI GTAC 1 cut(s) 446
DraIII CACNNNGTG 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EciI GGCGGA 4 cut(s) 122, 290, 365, 435
Eco72I CACGTG 1 cut(s) 346
FaeI CATG 1 cut(s) 459
FaiI YATR 5 cut(s) 83, 101, 114, 402, 457
FaqI GGGAC 2 cut(s) 130, 253
FatI CATG 1 cut(s) 455
Fnu4HI GCNGC 7 cut(s) 27, 45, 79, 188, 195, 319, 329
FokI GGATG 2 cut(s) 34, 365
Fsp4HI GCNGC 7 cut(s) 27, 45, 79, 188, 195, 319, 329
FspBI CTAG 1 cut(s) 96
GlaI GCGC 4 cut(s) 48, 127, 198, 209
GluI GCNGC 7 cut(s) 27, 45, 79, 188, 195, 319, 329
GsaI CCCAGC 1 cut(s) 164
HaeIII GGCC 2 cut(s) 328, 399
HapII CCGG 3 cut(s) 16, 227, 396
HgaI GACGC 2 cut(s) 250, 360
HhaI GCGC 4 cut(s) 49, 128, 199, 210
Hin1I GRCGYC 2 cut(s) 242, 371
Hin1II CATG 1 cut(s) 459
Hin6I GCGC 4 cut(s) 47, 126, 197, 208
HinP1I GCGC 4 cut(s) 47, 126, 197, 208
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 3 cut(s) 69, 259, 380
HpaII CCGG 3 cut(s) 16, 227, 396
HphI GGTGA 3 cut(s) 19, 262, 385
Hpy166II GTNNAC 3 cut(s) 10, 90, 214
Hpy188I TCNGA 3 cut(s) 74, 313, 376
Hpy8I GTNNAC 3 cut(s) 10, 90, 214
Hpy99I CGWCG 2 cut(s) 133, 376
HpyAV CCTTC 2 cut(s) 58, 280
HpyCH4IV ACGT 2 cut(s) 12, 345
HpyCH4V TGCA 2 cut(s) 90, 187
HpySE526I ACGT 2 cut(s) 12, 345
Hsp92I GRCGYC 2 cut(s) 242, 371
Hsp92II CATG 1 cut(s) 459
HspAI GCGC 4 cut(s) 47, 126, 197, 208
LpnPI CCDG 6 cut(s) 29, 146, 152, 176, 240, 409
Lsp1109I GCAGC 4 cut(s) 56, 90, 199, 330
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 96
MaeII ACGT 2 cut(s) 12, 345
MaeIII GTNAC 1 cut(s) 391
MboII GAAGA 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 403
MlyI GAGTC 3 cut(s) 78, 253, 374
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 3 cut(s) 68, 370, 448
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 3 cut(s) 190, 302, 331
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 3 cut(s) 16, 227, 396
MspR9I CCNGG 2 cut(s) 17, 228
MvnI CGCG 5 cut(s) 49, 128, 155, 199, 210
NciI CCSGG 2 cut(s) 17, 228
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 1 cut(s) 459
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 1 cut(s) 362
NmuCI GTSAC 1 cut(s) 391
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 137
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 7 cut(s) 28, 46, 80, 189, 196, 320, 330
PleI GAGTC 3 cut(s) 77, 253, 374
PmaCI CACGTG 1 cut(s) 346
PmlI CACGTG 1 cut(s) 346
PpsI GAGTC 3 cut(s) 77, 253, 374
Ppu21I YACGTR 1 cut(s) 346
PspCI CACGTG 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 7 cut(s) 27, 45, 79, 188, 195, 319, 329
Sau96I GGNCC 1 cut(s) 326
ScaI AGTACT 1 cut(s) 447
SchI GAGTC 3 cut(s) 78, 253, 374
ScrFI CCNGG 2 cut(s) 17, 228
SduI GDGCHC 1 cut(s) 92
SetI ASST 5 cut(s) 9, 15, 192, 270, 348
SfaNI GCATC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 15, 226
TaiI ACGT 2 cut(s) 15, 348
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 403
TatI WGTACW 1 cut(s) 445
TauI GCSGC 3 cut(s) 29, 197, 331
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 4 cut(s) 44, 78, 187, 318
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 2 cut(s) 134, 146
Van91I CCANNNNNTGG 1 cut(s) 406
Vha464I CTTAAG 1 cut(s) 263
VneI GTGCAC 1 cut(s) 88
XspI CTAG 1 cut(s) 96
ZrmI AGTACT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.