Rh6CG490700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000222
Physical Location & Seq
Reverse (-)
65783578 .. 65784719
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG490700.1

Sequence Viewer

Length: 582 bp
ATGAGAGTGGATCTAGTATCCGGTTGTGAGCGGTTGTGGAATAATCCCAGTCGGAGGGGTGGCTGTTTGGTTTCGCTGTCGAAAAGGAGAGGAGGCTCTGCCGAGGTGGATCGGAGCAGGTTCGGCGGTAGGGGGGTGGGGTGGGGATCGATCTCACTGCGCGTGGTAGGCCGGCAGCCGGAGGTGACAGCAGTGGGTGGTGCGATGTCGGAATCTGAGGGATCCAGATCGGATCGGGTTACCCCGAGTTGGTTTGGGTCGTTTGGAGTCGCGCTGTGGCTTGGGGATGGCGGCGACGCGTGCCGACCTGGTGAGGAGGGCGGAGAGCGGGGGGGACTGCCGGAGGCTGCTTCGTCCGGTAGGTTGGACGCCGGTGGGTGGACGGTGCCTCTTCCTCTCGCAGATCAGTGGCGAGATGCTTGCAGTCAGACGGCCTCTTTGATTGGGCTAAGTGGGGATTGGGCCTGGGCTTGGGCTATGGGCCCAAATTCTCCATATTTTATGTTTTATTGTTTTTGGTTTTTATTATTTAATGGTGGCTATATGCCGGTAATAAGTCCCTACCGAGTAGTGGTAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.66

Weight (kDa)

7.6

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 385
AccBSI CCGCTC 2 cut(s) 31, 328
AccII CGCG 3 cut(s) 162, 272, 299
AciI CCGC 5 cut(s) 31, 126, 291, 321, 328
AclWI GGATC 6 cut(s) 18, 117, 154, 216, 229, 240
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 369
AfiI CCNNNNNNNGG 6 cut(s) 54, 178, 249, 378, 471, 571
AflIII ACRYGT 1 cut(s) 297
AjnI CCWGG 2 cut(s) 307, 464
AlwI GGATC 6 cut(s) 18, 117, 154, 216, 229, 240
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 4 cut(s) 169, 432, 462, 481
ApaI GGGCCC 1 cut(s) 485
ApeKI GCWGC 2 cut(s) 175, 347
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AspLEI GCGC 2 cut(s) 162, 274
AspS9I GGNCC 3 cut(s) 462, 481, 482
AsuHPI GGTGA 2 cut(s) 196, 323
AvaI CYCGRG 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 485
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 187, 334
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 447
BcgI CGANNNNNNTGC 4 cut(s) 139, 173, 402, 436
BciT130I CCWGG 2 cut(s) 309, 466
BciVI GTATCC 1 cut(s) 28
BfaI CTAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 108
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 3 cut(s) 176, 292, 348
BlsI GCNGC 3 cut(s) 177, 293, 349
Bme1390I CCNGG 2 cut(s) 309, 466
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 462, 481, 482
BmiI GGNNCC 3 cut(s) 223, 387, 483
BmrFI CCNGG 2 cut(s) 309, 466
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 42
Bsa29I ATCGAT 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 102, 465
BsaWI WCCGGW 2 cut(s) 20, 356
Bsc4I CCNNNNNNNGG 6 cut(s) 54, 178, 249, 378, 471, 571
Bse118I RCCGGY 3 cut(s) 171, 371, 547
Bse1I ACTGG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 2 cut(s) 309, 466
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 102, 465
BseGI GGATG 1 cut(s) 292
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 6 cut(s) 54, 178, 249, 378, 471, 571
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 105, 329
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 2 cut(s) 187, 334
Bsh1236I CGCG 3 cut(s) 162, 272, 299
BshFI GGCC 4 cut(s) 171, 434, 464, 483
BshNI GGYRCC 1 cut(s) 385
BshVI ATCGAT 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 7 cut(s) 21, 172, 179, 341, 357, 372, 548
BslFI GGGAC 2 cut(s) 348, 543
BslI CCNNNNNNNGG 6 cut(s) 54, 178, 249, 378, 471, 571
BsmFI GGGAC 2 cut(s) 348, 543
BsnI GGCC 4 cut(s) 171, 434, 464, 483
BsoBI CYCGRG 1 cut(s) 244
Bsp120I GGGCCC 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 485
Bsp143I GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
BspACI CCGC 5 cut(s) 31, 126, 291, 321, 328
BspANI GGCC 4 cut(s) 171, 434, 464, 483
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 149
BspFNI CGCG 3 cut(s) 162, 272, 299
BspLI GGNNCC 3 cut(s) 223, 387, 483
BspMI ACCTGC 1 cut(s) 108
BspPI GGATC 6 cut(s) 18, 117, 154, 216, 229, 240
BspT107I GGYRCC 1 cut(s) 385
BsrBI CCGCTC 2 cut(s) 31, 328
BsrFI RCCGGY 3 cut(s) 171, 371, 547
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 3 cut(s) 171, 371, 547
BssECI CCNNGG 2 cut(s) 102, 465
BssMI GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
BssNI GRCGYC 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 309, 466
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 173, 301, 421
BstDEI CTNAG 2 cut(s) 216, 449
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 3 cut(s) 162, 272, 299
BstHHI GCGC 2 cut(s) 162, 274
BstKTI GATC 8 cut(s) 13, 112, 149, 153, 224, 230, 235, 406
BstMBI GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
BstMWI GCNNNNNNNGC 3 cut(s) 123, 168, 300
BstNI CCWGG 2 cut(s) 309, 466
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 307, 464
BstSLI GKGCMC 1 cut(s) 485
BstUI CGCG 3 cut(s) 162, 272, 299
BstV1I GCAGC 2 cut(s) 187, 334
BstX2I RGATCY 2 cut(s) 10, 221
BstYI RGATCY 2 cut(s) 10, 221
Bsu15I ATCGAT 1 cut(s) 149
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 4 cut(s) 171, 434, 464, 483
BsuTUI ATCGAT 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 218
BtsCI GGATG 1 cut(s) 292
BtsI GCAGTG 2 cut(s) 155, 198
BtsIMutI CAGTG 3 cut(s) 155, 198, 413
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 173, 301, 421
CfoI GCGC 2 cut(s) 162, 274
Cfr10I RCCGGY 3 cut(s) 171, 371, 547
Cfr13I GGNCC 3 cut(s) 462, 481, 482
ClaI ATCGAT 1 cut(s) 149
CseI GACGC 2 cut(s) 305, 377
CsiI ACCWGGT 1 cut(s) 307
DdeI CTNAG 2 cut(s) 216, 449
DpnI GATC 8 cut(s) 12, 111, 148, 152, 223, 229, 234, 405
DpnII GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 307, 464
EcoT38I GRGCYC 1 cut(s) 485
FaiI YATR 5 cut(s) 479, 496, 503, 543, 545
FaqI GGGAC 2 cut(s) 348, 543
FauI CCCGC 1 cut(s) 321
Fnu4HI GCNGC 3 cut(s) 176, 292, 348
FokI GGATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 3 cut(s) 176, 292, 348
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 161, 273
GluI GCNGC 3 cut(s) 176, 292, 348
HaeIII GGCC 4 cut(s) 171, 434, 464, 483
HapII CCGG 7 cut(s) 21, 172, 179, 341, 357, 372, 548
HgaI GACGC 2 cut(s) 305, 377
HhaI GCGC 2 cut(s) 162, 274
Hin1I GRCGYC 1 cut(s) 369
Hin6I GCGC 2 cut(s) 160, 272
HinP1I GCGC 2 cut(s) 160, 272
HinfI GANTC 2 cut(s) 212, 267
HpaII CCGG 7 cut(s) 21, 172, 179, 341, 357, 372, 548
HphI GGTGA 2 cut(s) 196, 323
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 6 cut(s) 54, 114, 211, 217, 232, 429
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 1 cut(s) 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 168, 300
HpyF3I CTNAG 2 cut(s) 216, 449
Hsp92I GRCGYC 1 cut(s) 369
HspAI GCGC 2 cut(s) 160, 272
KroI GCCGGC 1 cut(s) 171
KroNI GCCGGC 1 cut(s) 173
Kzo9I GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
LmnI GCTCC 1 cut(s) 114
Lsp1109I GCAGC 2 cut(s) 187, 334
LweI GCATC 1 cut(s) 406
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 184, 238
MalI GATC 8 cut(s) 12, 111, 148, 152, 223, 229, 234, 405
MbiI CCGCTC 2 cut(s) 31, 328
MboI GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
MboII GAAGA 1 cut(s) 383
MflI RGATCY 2 cut(s) 10, 221
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 1 cut(s) 487
MluI ACGCGT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 276
MmeI TCCRAC 3 cut(s) 32, 189, 345
MroNI GCCGGC 1 cut(s) 171
MseI TTAA 1 cut(s) 531
MspI CCGG 7 cut(s) 21, 172, 179, 341, 357, 372, 548
MspR9I CCNGG 2 cut(s) 309, 466
MvaI CCWGG 2 cut(s) 309, 466
MvnI CGCG 3 cut(s) 162, 272, 299
MwoI GCNNNNNNNGC 3 cut(s) 123, 168, 300
NaeI GCCGGC 1 cut(s) 173
NdeII GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
NgoMIV GCCGGC 1 cut(s) 171
NlaIV GGNNCC 3 cut(s) 223, 387, 483
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 184
PdiI GCCGGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 177, 293, 349
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 307, 464
PspEI GGTNACC 1 cut(s) 238
PspGI CCWGG 2 cut(s) 307, 464
PspN4I GGNNCC 3 cut(s) 223, 387, 483
PspOMI GGGCCC 1 cut(s) 481
PspPI GGNCC 3 cut(s) 462, 481, 482
PsuI RGATCY 2 cut(s) 10, 221
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 3 cut(s) 176, 292, 348
Sau3AI GATC 8 cut(s) 10, 109, 146, 150, 221, 227, 232, 403
Sau96I GGNCC 3 cut(s) 462, 481, 482
SchI GAGTC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 309, 466
SduI GDGCHC 1 cut(s) 485
SetI ASST 5 cut(s) 108, 122, 186, 310, 365
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 406
SgrAI CRCCGGYG 1 cut(s) 371
Sse9I AATT 1 cut(s) 487
SsiI CCGC 5 cut(s) 31, 126, 291, 321, 328
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 307, 464
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 80, 149
TasI AATT 1 cut(s) 487
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 3 cut(s) 162, 198, 413
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 175, 347
Tsp45I GTSAC 1 cut(s) 184
TspRI CASTG 3 cut(s) 162, 198, 413
XapI RAATTY 1 cut(s) 487
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.