Rmu_co8126788.1_g000001

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8126788.1
OG0000222
Physical Location & Seq
Reverse (-)
1 .. 566
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8126788.1_g000001.1.cds

Sequence Viewer

Length: 517 bp
atgtacagcaacgcggggataaccgccgcgtcggtacagacggtgatggagctggacttgtcatggttcgataaggtgatggcggtaaacgcccgcgggatggctgcgtgtgtgaagcacgcggcgcgtgcgatggtggggaagagagtcaggggcagcatagtgtgcacggcgagctgcgtggcggagtgggggacggagagcgcgacggactacacgatctcgaagcacgcggtgctggggctggtgaggtcggcgagcgtgcagctggcggcgcgtggggtgcgcgtgaactgcgtgtctccgggtgcggtggggacgccgctggtgagcgagctttttaagattggggaggaagagctgaaggattttatggcagcggtatattcgggaagcagcgatgatgggccgctgatggagaaacacgtggcggatgcggtgctgtttttggcgtcggaggagtcggcgttcatcaccggccataatttggtggttgatgggggacttggcaccaagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

172

Amino Acids

17.97

Weight (kDa)

5.78

Isoelectric Point (pI)

26.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 487
AccII CGCG 9 cut(s) 14, 29, 96, 122, 127, 206, 233, 277, 288
AcoI YGGCCR 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 1 cut(s) 427
AcyI GRCGYC 2 cut(s) 320, 452
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 2 cut(s) 5, 36
AfiI CCNNNNNNNGG 2 cut(s) 100, 487
AflIII ACRYGT 1 cut(s) 424
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 5 cut(s) 52, 177, 268, 337, 361
AluI AGCT 5 cut(s) 52, 177, 268, 337, 361
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 166
AoxI GGCC 2 cut(s) 407, 478
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 6 cut(s) 104, 156, 177, 265, 377, 396
AspLEI GCGC 4 cut(s) 127, 206, 277, 288
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 5 cut(s) 55, 88, 259, 340, 466
BaeGI GKGCMC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 509
BbrPI CACGTG 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 6 cut(s) 91, 164, 168, 277, 389, 408
BccI CCATC 7 cut(s) 40, 73, 94, 127, 398, 409, 491
BceAI ACGGC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 2 cut(s) 320, 452
BsaJI CCNNGG 2 cut(s) 94, 513
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 487
Bse118I RCCGGY 1 cut(s) 476
BseDI CCNNGG 2 cut(s) 94, 513
BseGI GGATG 2 cut(s) 105, 439
BseLI CCNNNNNNNGG 2 cut(s) 100, 487
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 6 cut(s) 91, 164, 168, 277, 389, 408
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 9 cut(s) 14, 29, 96, 122, 127, 206, 233, 277, 288
BshFI GGCC 2 cut(s) 409, 480
BshNI GGYRCC 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 2 cut(s) 305, 477
BslFI GGGAC 2 cut(s) 208, 331
BslI CCNNNNNNNGG 2 cut(s) 100, 487
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 208, 331
BsnI GGCC 2 cut(s) 409, 480
Bsp1286I GDGCHC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 219
BspANI GGCC 2 cut(s) 409, 480
BspFNI CGCG 9 cut(s) 14, 29, 96, 122, 127, 206, 233, 277, 288
BspLI GGNNCC 1 cut(s) 511
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 476
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 94, 513
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 2 cut(s) 320, 452
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 137, 351
BstACI GRCGYC 2 cut(s) 320, 452
BstAPI GCANNNNNTGC 2 cut(s) 165, 235
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 9 cut(s) 94, 120, 129, 175, 231, 259, 263, 270, 335
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 105, 439
BstFNI CGCG 9 cut(s) 14, 29, 96, 122, 127, 206, 233, 277, 288
BstHHI GCGC 4 cut(s) 127, 206, 277, 288
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 9 cut(s) 89, 124, 128, 165, 174, 235, 274, 283, 294
BstSCI CCNGG 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 9 cut(s) 14, 29, 96, 122, 127, 206, 233, 277, 288
BstV1I GCAGC 6 cut(s) 91, 164, 168, 277, 389, 408
BsuRI GGCC 2 cut(s) 409, 480
BtgI CCRYGG 1 cut(s) 94
BtgZI GCGATG 2 cut(s) 146, 414
BtsCI GGATG 2 cut(s) 105, 439
Cac8I GCNNGC 9 cut(s) 94, 120, 129, 175, 231, 259, 263, 270, 335
CfoI GCGC 4 cut(s) 127, 206, 277, 288
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 407
Cfr42I CCGCGG 1 cut(s) 97
CseI GACGC 3 cut(s) 18, 328, 441
Csp6I GTAC 2 cut(s) 4, 35
CviAII CATG 1 cut(s) 63
CviJI RGCY 9 cut(s) 52, 104, 177, 244, 268, 337, 361, 409, 480
CviKI_1 RGCY 9 cut(s) 52, 104, 177, 244, 268, 337, 361, 409, 480
CviQI GTAC 2 cut(s) 4, 35
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
DraIII CACNNNGTG 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 137, 351
EarI CTCTTC 2 cut(s) 137, 351
EciI GGCGGA 2 cut(s) 200, 446
Eco130I CCWWGG 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 1 cut(s) 66
FaiI YATR 5 cut(s) 64, 161, 374, 385, 483
FaqI GGGAC 2 cut(s) 208, 331
FatI CATG 1 cut(s) 62
FauI CCCGC 3 cut(s) 7, 89, 101
FokI GGATG 2 cut(s) 112, 446
GlaI GCGC 4 cut(s) 126, 205, 276, 287
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 2 cut(s) 409, 480
HapII CCGG 2 cut(s) 305, 477
HgaI GACGC 3 cut(s) 18, 328, 441
HhaI GCGC 4 cut(s) 127, 206, 277, 288
Hin1I GRCGYC 2 cut(s) 320, 452
Hin1II CATG 1 cut(s) 66
Hin6I GCGC 4 cut(s) 125, 204, 275, 286
HinP1I GCGC 4 cut(s) 125, 204, 275, 286
HinfI GANTC 2 cut(s) 147, 461
HpaII CCGG 2 cut(s) 305, 477
HphI GGTGA 5 cut(s) 55, 88, 259, 340, 466
Hpy166II GTNNAC 3 cut(s) 88, 168, 292
Hpy188I TCNGA 1 cut(s) 457
Hpy188III TCNNGA 2 cut(s) 223, 390
Hpy8I GTNNAC 3 cut(s) 88, 168, 292
Hpy99I CGWCG 3 cut(s) 34, 211, 457
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 2 cut(s) 168, 265
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 124, 128, 165, 174, 235, 274, 283, 294
HpySE526I ACGT 1 cut(s) 426
Hsp92I GRCGYC 2 cut(s) 320, 452
Hsp92II CATG 1 cut(s) 66
HspAI GCGC 4 cut(s) 125, 204, 275, 286
KspI CCGCGG 1 cut(s) 97
Kzo9I GATC 1 cut(s) 219
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 8 cut(s) 38, 136, 224, 230, 254, 311, 318, 490
Lsp1109I GCAGC 6 cut(s) 91, 164, 168, 277, 389, 408
LweI GCATC 1 cut(s) 424
MaeII ACGT 1 cut(s) 426
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 154, 368
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 484
MlyI GAGTC 2 cut(s) 156, 470
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 3 cut(s) 243, 346, 451
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 5 cut(s) 96, 268, 325, 380, 412
MspI CCGG 2 cut(s) 305, 477
MspR9I CCNGG 1 cut(s) 306
MvnI CGCG 9 cut(s) 14, 29, 96, 122, 127, 206, 233, 277, 288
MwoI GCNNNNNNNGC 9 cut(s) 89, 124, 128, 165, 174, 235, 274, 283, 294
NciI CCSGG 1 cut(s) 306
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 66
NlaIV GGNNCC 1 cut(s) 511
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 2 cut(s) 203, 215
PflMI CCANNNNNTGG 1 cut(s) 487
PleI GAGTC 2 cut(s) 155, 469
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
PpsI GAGTC 2 cut(s) 155, 469
Ppu21I YACGTR 1 cut(s) 427
PspCI CACGTG 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 2 cut(s) 5, 36
RsaNI GTAC 2 cut(s) 4, 35
SacII CCGCGG 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 342
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 2 cut(s) 156, 470
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 170
SetI ASST 8 cut(s) 54, 78, 179, 254, 270, 339, 363, 429
SfaNI GCATC 1 cut(s) 424
Sfr303I CCGCGG 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 97
Sse9I AATT 1 cut(s) 484
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 429
TaqI TCGA 2 cut(s) 69, 224
TasI AATT 1 cut(s) 484
TatI WGTACW 1 cut(s) 3
TauI GCSGC 5 cut(s) 29, 125, 275, 325, 412
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 6 cut(s) 104, 156, 177, 265, 377, 396
TspDTI ATGAA 1 cut(s) 460
TspGWI ACGGA 2 cut(s) 212, 224
Van91I CCANNNNNTGG 1 cut(s) 487
VneI GTGCAC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.