Rh7AG035000

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000222
Physical Location & Seq
Forward (+)
2423927 .. 2425198
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG035000.1

Sequence Viewer

Length: 771 bp
ATGAGCAACAAATTACAAGGCAAAGTAGCCATAGTCAGCGGCGGCGCAAGCGGCATTGGGGAGGCCACAGCACGCCTCTTCGCCGAGCATGGAGCATCCATGGTGATCATCGTTGACATCCAAGACGATCTCGGCTGTAAAATAGCTGAGTCCATCGGCCACCACCGATGCAGCTACGTGCACTGTGACGTGGCCGATGAAGAGCAAGTGAGGTCCATGGTGCAAGCAACGGTCGAGAAATTCGGACACGTCGACATCATGTTCAGCAACGCCGGGATAATGAGCCGCCAAGACCAGACCGTCCTTGACCTTGACTTTCCCTCCTTTGACCGTTTGTTCAACGTGAACGTGCGCGGCATGGCGTCGTGCGTGAAACACGCGGCGCGTGCGATGGTGGAGGGGCGCGTGAGTGGGAGCATAGTGTGCACAGCGAGCGTGGGAGCGAGCCACGGGATGGGGAAGAGCACGGACTACTGCATGTCGAAGCATGCCGTGTTGGGGCTGATGAGGTCGGCGAGCGTGCAGCTGGGGGTGCATGGGATTAGGGTGAACTGCGTCTCACCGAATGGGATGGCGACGCCGCTGACGTGCAAGGCGAGTGGGAAGGAGATGGCGGAGCTTCAGAAGGCGTATGAGAAGTTCGCGCGGTTGAGAGGGGTGGTGCTCAAAGCGGAGCACGTGGCCAAGGCGGTGCTGTTTCTTGCGAGTGATGATTCTGAGTTTGTGACTGGACATGATTTGGTTGTTGATGGGTCATTTGTTCCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

256

Amino Acids

27.21

Weight (kDa)

6.59

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 199 4e-46 short chain dehydrogenase
KR PF08659 10 - 173 2.8e-11 KR domain
adh_short_C2 PF13561 16 - 251 1.1e-62 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 454
AccI GTMKAC 1 cut(s) 252
AccII CGCG 6 cut(s) 354, 380, 385, 405, 644, 646
AcoI YGGCCR 3 cut(s) 157, 192, 681
AcsI RAATTY 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 605
AcvI CACGTG 1 cut(s) 679
AcyI GRCGYC 2 cut(s) 362, 578
AfiI CCNNNNNNNGG 2 cut(s) 454, 498
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 1 cut(s) 340
AjiI CACGTC 3 cut(s) 190, 250, 588
AluBI AGCT 4 cut(s) 146, 174, 526, 619
AluI AGCT 4 cut(s) 146, 174, 526, 619
Alw21I GWGCWC 5 cut(s) 183, 428, 467, 666, 678
Alw26I GTCTC 1 cut(s) 562
Alw44I GTGCAC 2 cut(s) 179, 424
AoxI GGCC 4 cut(s) 63, 157, 192, 681
ApaLI GTGCAC 2 cut(s) 179, 424
ApeKI GCWGC 2 cut(s) 171, 523
ApoI RAATTY 1 cut(s) 239
AspLEI GCGC 5 cut(s) 47, 354, 385, 405, 646
AspS9I GGNCC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 3 cut(s) 115, 552, 559
AvaII GGWCC 1 cut(s) 213
BaeGI GKGCMC 2 cut(s) 183, 428
BalI TGGCCA 1 cut(s) 683
BbrPI CACGTG 1 cut(s) 679
Bbv12I GWGCWC 5 cut(s) 183, 428, 467, 666, 678
BbvI GCAGC 2 cut(s) 183, 535
BccI CCATC 6 cut(s) 161, 385, 448, 565, 604, 743
BceAI ACGGC 1 cut(s) 476
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 562
BisI GCNGC 9 cut(s) 40, 43, 52, 172, 286, 355, 381, 524, 581
BlsI GCNGC 9 cut(s) 41, 44, 53, 173, 287, 356, 382, 525, 582
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 213
BmgBI CACGTC 3 cut(s) 190, 250, 588
BmgT120I GGNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 104, 158
BpuMI CCSGG 1 cut(s) 274
BsaAI YACGTR 2 cut(s) 178, 679
BsaHI GRCGYC 2 cut(s) 362, 578
BsaJI CCNNGG 4 cut(s) 99, 216, 448, 684
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 498
Bse1I ACTGG 1 cut(s) 733
BseDI CCNNGG 4 cut(s) 99, 216, 448, 684
BseGI GGATG 4 cut(s) 95, 117, 459, 576
BseLI CCNNNNNNNGG 2 cut(s) 454, 498
BseMII CTCAG 2 cut(s) 138, 708
BseNI ACTGG 1 cut(s) 733
BseSI GKGCMC 2 cut(s) 183, 428
BseXI GCAGC 2 cut(s) 183, 535
BseYI CCCAGC 1 cut(s) 526
BsgI GTGCAG 1 cut(s) 542
Bsh1236I CGCG 6 cut(s) 354, 380, 385, 405, 644, 646
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 4 cut(s) 65, 159, 194, 683
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 5 cut(s) 183, 428, 467, 666, 678
BsiSI CCGG 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 454, 498
BsmAI GTCTC 1 cut(s) 562
BsmBI CGTCTC 1 cut(s) 562
BsnI GGCC 4 cut(s) 65, 159, 194, 683
Bsp1286I GDGCHC 5 cut(s) 183, 428, 467, 666, 678
Bsp143I GATC 2 cut(s) 105, 127
Bsp19I CCATGG 2 cut(s) 99, 216
BspANI GGCC 4 cut(s) 65, 159, 194, 683
BspCNI CTCAG 2 cut(s) 139, 709
BspFNI CGCG 6 cut(s) 354, 380, 385, 405, 644, 646
BspQI GCTCTTC 2 cut(s) 195, 455
BsrI ACTGG 1 cut(s) 733
BssECI CCNNGG 4 cut(s) 99, 216, 448, 684
BssMI GATC 2 cut(s) 105, 127
BssNI GRCGYC 2 cut(s) 362, 578
BssT1I CCWWGG 3 cut(s) 99, 216, 684
Bst4CI ACNGT 4 cut(s) 185, 232, 301, 332
Bst6I CTCTTC 3 cut(s) 83, 195, 455
BstACI GRCGYC 2 cut(s) 362, 578
BstAPI GCANNNNNTGC 1 cut(s) 423
BstBAI YACGTR 2 cut(s) 178, 679
BstC8I GCNNGC 9 cut(s) 49, 73, 225, 387, 433, 445, 489, 517, 521
BstDEI CTNAG 2 cut(s) 147, 717
BstDSI CCRYGG 3 cut(s) 99, 216, 448
BstF5I GGATG 4 cut(s) 95, 117, 459, 576
BstFNI CGCG 6 cut(s) 354, 380, 385, 405, 644, 646
BstHHI GCGC 5 cut(s) 47, 354, 385, 405, 646
BstKTI GATC 2 cut(s) 108, 130
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 2 cut(s) 105, 127
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 6 cut(s) 48, 51, 386, 423, 432, 532
BstNSI RCATGY 2 cut(s) 481, 491
BstSCI CCNGG 1 cut(s) 272
BstSLI GKGCMC 2 cut(s) 183, 428
BstUI CGCG 6 cut(s) 354, 380, 385, 405, 644, 646
BstV1I GCAGC 2 cut(s) 183, 535
BsuRI GGCC 4 cut(s) 65, 159, 194, 683
BtgI CCRYGG 3 cut(s) 99, 216, 448
BtgZI GCGATG 1 cut(s) 404
BtrI CACGTC 3 cut(s) 190, 250, 588
BtsCI GGATG 4 cut(s) 95, 117, 459, 576
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 9 cut(s) 49, 73, 225, 387, 433, 445, 489, 517, 521
CfoI GCGC 5 cut(s) 47, 354, 385, 405, 646
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 3 cut(s) 351, 544, 586
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
DdeI CTNAG 2 cut(s) 147, 717
DpnI GATC 2 cut(s) 107, 129
DpnII GATC 2 cut(s) 105, 127
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 3 cut(s) 157, 192, 681
Eam1104I CTCTTC 3 cut(s) 83, 195, 455
EarI CTCTTC 3 cut(s) 83, 195, 455
EciI GGCGGA 1 cut(s) 629
Eco130I CCWWGG 3 cut(s) 99, 216, 684
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 605
Eco72I CACGTG 1 cut(s) 679
EcoT14I CCWWGG 3 cut(s) 99, 216, 684
ErhI CCWWGG 3 cut(s) 99, 216, 684
Esp3I CGTCTC 1 cut(s) 562
FbaI TGATCA 1 cut(s) 105
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 9 cut(s) 40, 43, 52, 172, 286, 355, 381, 524, 581
FokI GGATG 4 cut(s) 82, 104, 466, 583
Fsp4HI GCNGC 9 cut(s) 40, 43, 52, 172, 286, 355, 381, 524, 581
GlaI GCGC 5 cut(s) 46, 353, 384, 404, 645
GluI GCNGC 9 cut(s) 40, 43, 52, 172, 286, 355, 381, 524, 581
GsaI CCCAGC 1 cut(s) 530
HaeIII GGCC 4 cut(s) 65, 159, 194, 683
HapII CCGG 1 cut(s) 273
HgaI GACGC 3 cut(s) 351, 544, 586
HhaI GCGC 5 cut(s) 47, 354, 385, 405, 646
Hin1I GRCGYC 2 cut(s) 362, 578
Hin6I GCGC 5 cut(s) 45, 352, 383, 403, 644
HinP1I GCGC 5 cut(s) 45, 352, 383, 403, 644
HincII GTYRAC 2 cut(s) 115, 253
HindII GTYRAC 2 cut(s) 115, 253
HinfI GANTC 2 cut(s) 149, 713
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 115, 552, 559
Hpy166II GTNNAC 6 cut(s) 115, 181, 253, 346, 426, 550
Hpy188I TCNGA 3 cut(s) 245, 624, 718
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 6 cut(s) 115, 181, 253, 346, 426, 550
Hpy99I CGWCG 3 cut(s) 254, 367, 580
HpyAV CCTTC 2 cut(s) 598, 619
HpyCH4III ACNGT 4 cut(s) 185, 232, 301, 332
HpyCH4IV ACGT 7 cut(s) 177, 189, 249, 342, 348, 587, 678
HpyCH4V TGCA 8 cut(s) 171, 181, 223, 426, 477, 523, 535, 591
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 51, 386, 423, 432, 532
HpyF3I CTNAG 2 cut(s) 147, 717
HpySE526I ACGT 7 cut(s) 177, 189, 249, 342, 348, 587, 678
Hsp92I GRCGYC 2 cut(s) 362, 578
HspAI GCGC 5 cut(s) 45, 352, 383, 403, 644
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 105, 127
LguI GCTCTTC 2 cut(s) 195, 455
LmnI GCTCC 5 cut(s) 92, 414, 440, 616, 673
LpnPI CCDG 4 cut(s) 286, 308, 512, 714
Lsp1109I GCAGC 2 cut(s) 183, 535
LweI GCATC 2 cut(s) 104, 158
MaeII ACGT 7 cut(s) 177, 189, 249, 342, 348, 587, 678
MaeIII GTNAC 2 cut(s) 185, 724
MalI GATC 2 cut(s) 107, 129
MboI GATC 2 cut(s) 105, 127
MboII GAAGA 3 cut(s) 70, 212, 472
MhlI GDGCHC 5 cut(s) 183, 428, 467, 666, 678
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 2 cut(s) 11, 239
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 7 cut(s) 55, 86, 204, 331, 391, 501, 647
Mox20I TGGCCA 1 cut(s) 683
MscI TGGCCA 1 cut(s) 683
Msp20I TGGCCA 1 cut(s) 683
MspA1I CMGCKG 3 cut(s) 39, 526, 583
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 274
MvnI CGCG 6 cut(s) 354, 380, 385, 405, 644, 646
MwoI GCNNNNNNNGC 6 cut(s) 48, 51, 386, 423, 432, 532
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 2 cut(s) 99, 216
NdeII GATC 2 cut(s) 105, 127
NmeAIII GCCGAG 2 cut(s) 109, 111
NmuCI GTSAC 2 cut(s) 185, 724
NspI RCATGY 2 cut(s) 481, 491
PaeI GCATGC 1 cut(s) 491
PciSI GCTCTTC 2 cut(s) 195, 455
PcsI WCGNNNNNNNCGW 3 cut(s) 249, 584, 593
PfeI GAWTC 1 cut(s) 713
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 9 cut(s) 41, 44, 53, 173, 287, 356, 382, 525, 582
PleI GAGTC 1 cut(s) 157
PmaCI CACGTG 1 cut(s) 679
PmlI CACGTG 1 cut(s) 679
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 2 cut(s) 178, 679
PspCI CACGTG 1 cut(s) 679
PspFI CCCAGC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 213
PsrI GAACNNNNNNTAC 2 cut(s) 623, 655
PvuII CAGCTG 1 cut(s) 526
SalI GTCGAC 1 cut(s) 251
SapI GCTCTTC 2 cut(s) 195, 455
SatI GCNGC 9 cut(s) 40, 43, 52, 172, 286, 355, 381, 524, 581
Sau3AI GATC 2 cut(s) 105, 127
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 5 cut(s) 183, 428, 467, 666, 678
SfaNI GCATC 2 cut(s) 104, 158
SinI GGWCC 1 cut(s) 213
SphI GCATGC 1 cut(s) 491
Sse9I AATT 2 cut(s) 11, 239
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 3 cut(s) 99, 216, 684
TaaI ACNGT 4 cut(s) 185, 232, 301, 332
TaiI ACGT 7 cut(s) 180, 192, 252, 345, 351, 590, 681
TaqI TCGA 3 cut(s) 234, 252, 482
TasI AATT 2 cut(s) 11, 239
TauI GCSGC 7 cut(s) 42, 45, 54, 288, 357, 383, 583
TfiI GAWTC 1 cut(s) 713
TscAI CASTG 1 cut(s) 188
TseFI GTSAC 2 cut(s) 185, 724
TseI GCWGC 2 cut(s) 171, 523
Tsp45I GTSAC 2 cut(s) 185, 724
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 482
TspRI CASTG 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 454
VneI GTGCAC 2 cut(s) 179, 424
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 1 cut(s) 239
XceI RCATGY 2 cut(s) 481, 491
XmiI GTMKAC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.