FvH4_3g23780

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000222
Physical Location & Seq
Forward (+)
16851473 .. 16852968
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23780.t1

Sequence Viewer

Length: 429 bp
ATGGCAGAACTACTCAAGAGCAAGCTTCAAGACAAGGTGGCTATAGTCACGGGTGGCGCCAGCGGCATTGGCGAAGCCACTGCACGCTGCTTTGCATTGCACGGTGCGCGTGCGGTGGTTATCGCCGACGTCCAGGACCAGAAAGCCCAGGAAGTCGCCGCTTCGATCGGTCCTCACTGCAGCTACATCCACTGCGATGTTACAGACGAGAATCAAGTGAAGAGCCTGGTCGATTCAACTGTCCAGATGCACGGCGGCTTGGACATCATGTTTAGCAATGCAGGAATATTCAGCAAGTCCGAGCAGACCGTGCTGGAGTTTGACTTATCCAACTACGACAAGCTCATGGTGATCAACACACGTGGGATGGAAGCGTGTGTGAAGCATGCGGCGAGGGCATGGTGGAAGGTGGAGTTAAGGGAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

143

Amino Acids

15.39

Weight (kDa)

5.68

Isoelectric Point (pI)

20.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 12 - 134 8.5e-26 short chain dehydrogenase
KR PF08659 15 - 100 3.3e-09 KR domain
adh_short_C2 PF13561 20 - 132 3.5e-24 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 109
AciI CCGC 5 cut(s) 63, 113, 159, 255, 389
AcvI CACGTG 1 cut(s) 362
AcyI GRCGYC 2 cut(s) 57, 129
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 2 cut(s) 29, 237
AjnI CCWGG 3 cut(s) 132, 147, 225
AluBI AGCT 3 cut(s) 25, 183, 343
AluI AGCT 3 cut(s) 25, 183, 343
ApeKI GCWGC 2 cut(s) 87, 180
AspLEI GCGC 2 cut(s) 59, 109
AspS9I GGNCC 2 cut(s) 136, 170
AsuHPI GGTGA 1 cut(s) 361
AvaII GGWCC 2 cut(s) 136, 170
BanI GGYRCC 1 cut(s) 56
BbrPI CACGTG 1 cut(s) 362
BbvI GCAGC 2 cut(s) 74, 192
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 3 cut(s) 134, 149, 227
BclI TGATCA 1 cut(s) 351
BfmI CTRYAG 2 cut(s) 42, 178
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 6 cut(s) 64, 88, 159, 181, 256, 390
BlsI GCNGC 6 cut(s) 65, 89, 160, 182, 257, 391
Bme1390I CCNGG 3 cut(s) 134, 149, 227
Bme18I GGWCC 2 cut(s) 136, 170
BmgT120I GGNCC 2 cut(s) 136, 170
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 3 cut(s) 134, 149, 227
BmsI GCATC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 2 cut(s) 57, 129
BsaJI CCNNGG 1 cut(s) 147
Bse3DI GCAATG 2 cut(s) 95, 283
BseBI CCWGG 3 cut(s) 134, 149, 227
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 186, 372
BseMI GCAATG 2 cut(s) 95, 283
BseXI GCAGC 2 cut(s) 74, 192
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 168
Bsp143I GATC 2 cut(s) 165, 351
BspACI CCGC 5 cut(s) 63, 113, 159, 255, 389
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 95, 283
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 165, 351
BssNI GRCGYC 2 cut(s) 57, 129
Bst2UI CCWGG 3 cut(s) 134, 149, 227
Bst4CI ACNGT 3 cut(s) 104, 241, 310
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 2 cut(s) 57, 129
BstAPI GCANNNNNTGC 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 5 cut(s) 23, 61, 85, 111, 387
BstF5I GGATG 2 cut(s) 186, 372
BstFNI CGCG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 59, 109
BstKTI GATC 2 cut(s) 168, 354
BstMBI GATC 2 cut(s) 165, 351
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 5 cut(s) 63, 69, 106, 310, 395
BstNI CCWGG 3 cut(s) 134, 149, 227
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 3 cut(s) 132, 147, 225
BstSFI CTRYAG 2 cut(s) 42, 178
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 74, 192
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 2 cut(s) 186, 372
BtsI GCAGTG 3 cut(s) 78, 175, 190
BtsIMutI CAGTG 3 cut(s) 78, 175, 190
Cac8I GCNNGC 5 cut(s) 23, 61, 85, 111, 387
CfoI GCGC 2 cut(s) 59, 109
Cfr13I GGNCC 2 cut(s) 136, 170
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 4 cut(s) 268, 346, 386, 399
CviJI RGCY 8 cut(s) 25, 41, 77, 146, 183, 225, 258, 343
CviKI_1 RGCY 8 cut(s) 25, 41, 77, 146, 183, 225, 258, 343
DinI GGCGCC 1 cut(s) 58
DpnI GATC 2 cut(s) 167, 353
DpnII GATC 2 cut(s) 165, 351
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 136, 170
Eco72I CACGTG 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 132, 147, 225
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaeI CATG 4 cut(s) 271, 349, 389, 402
FaiI YATR 5 cut(s) 44, 269, 347, 387, 400
FatI CATG 4 cut(s) 267, 345, 385, 398
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 6 cut(s) 64, 88, 159, 181, 256, 390
FokI GGATG 2 cut(s) 173, 379
Fsp4HI GCNGC 6 cut(s) 64, 88, 159, 181, 256, 390
GlaI GCGC 2 cut(s) 58, 108
GluI GCNGC 6 cut(s) 64, 88, 159, 181, 256, 390
GsuI CTGGAG 1 cut(s) 335
HaeII RGCGCY 1 cut(s) 60
HhaI GCGC 2 cut(s) 59, 109
Hin1I GRCGYC 2 cut(s) 57, 129
Hin1II CATG 4 cut(s) 271, 349, 389, 402
Hin6I GCGC 2 cut(s) 57, 107
HinP1I GCGC 2 cut(s) 57, 107
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 211, 233
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 3 cut(s) 16, 29, 244
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 3 cut(s) 104, 241, 310
HpyCH4IV ACGT 2 cut(s) 129, 361
HpyCH4V TGCA 6 cut(s) 83, 95, 100, 180, 250, 281
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 69, 106, 310, 395
HpySE526I ACGT 2 cut(s) 129, 361
Hsp92I GRCGYC 2 cut(s) 57, 129
Hsp92II CATG 4 cut(s) 271, 349, 389, 402
HspAI GCGC 2 cut(s) 57, 107
KasI GGCGCC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 2 cut(s) 165, 351
LguI GCTCTTC 1 cut(s) 215
Lsp1109I GCAGC 2 cut(s) 74, 192
LweI GCATC 1 cut(s) 237
MaeII ACGT 2 cut(s) 129, 361
MaeIII GTNAC 2 cut(s) 46, 199
MalI GATC 2 cut(s) 167, 353
MboI GATC 2 cut(s) 165, 351
MboII GAAGA 1 cut(s) 232
Mly113I GGCGCC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 2 cut(s) 183, 387
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 134, 149, 227
MvaI CCWGG 3 cut(s) 134, 149, 227
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 5 cut(s) 63, 69, 106, 310, 395
NarI GGCGCC 1 cut(s) 57
NdeII GATC 2 cut(s) 165, 351
NlaIII CATG 4 cut(s) 271, 349, 389, 402
NlaIV GGNNCC 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 389
PaeI GCATGC 1 cut(s) 389
PciSI GCTCTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 211, 233
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 6 cut(s) 65, 89, 160, 182, 257, 391
Ple19I CGATCG 1 cut(s) 168
PluTI GGCGCC 1 cut(s) 60
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 362
Psp6I CCWGG 3 cut(s) 132, 147, 225
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 3 cut(s) 132, 147, 225
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 136, 170
PstI CTGCAG 1 cut(s) 182
PvuI CGATCG 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 6 cut(s) 64, 88, 159, 181, 256, 390
Sau3AI GATC 2 cut(s) 165, 351
Sau96I GGNCC 2 cut(s) 136, 170
ScrFI CCNGG 3 cut(s) 134, 149, 227
SetI ASST 7 cut(s) 27, 39, 132, 185, 345, 364, 411
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 2 cut(s) 42, 178
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 2 cut(s) 136, 170
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SphI GCATGC 1 cut(s) 389
SsiI CCGC 5 cut(s) 63, 113, 159, 255, 389
SspDI GGCGCC 1 cut(s) 56
SspI AATATT 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 132, 147, 225
TaaI ACNGT 3 cut(s) 104, 241, 310
TaiI ACGT 2 cut(s) 132, 364
TaqI TCGA 2 cut(s) 164, 231
TaqII GACCGA 1 cut(s) 158
TauI GCSGC 4 cut(s) 66, 161, 258, 392
TfiI GAWTC 2 cut(s) 211, 233
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 3 cut(s) 85, 182, 197
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 87, 180
Tsp45I GTSAC 1 cut(s) 46
TspRI CASTG 3 cut(s) 85, 182, 197
VpaK11BI GGWCC 2 cut(s) 136, 170
XceI RCATGY 1 cut(s) 389
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.