RLG00000035265

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000222
Physical Location & Seq
Forward (+)
63830401 .. 63830724
324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035265

Sequence Viewer

Length: 324 bp
ATGTCGAAGCATGCGGTGCTGGGGCTGGTGAGGTCGGTGAGCGTGCAGTTGGCGCCGCTTGGTGTGCGGGTGAACTGCGTGTCGCCTAGTTTTGTGGGGACGCCGATGGTGGCGGAGGCTTTTAAGATTGGGGCTGAAGAGCTGAAGGAGATGCTGGCAGCGGTTTATATCGGAAGCGATGGGCCGCTAATGGAGAAACATGTGGCGGATGCGGTGGTGTTTTTGGCGTCGGAGGACTCGGCGTTTGTCAACGGCCATAATTTGGTGGTTGATGGTGGACTTGGCATCAAGTCCTTATCATTATTGAAACCAAGATCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

108

Amino Acids

11.15

Weight (kDa)

6.26

Isoelectric Point (pI)

26.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 94 1.7e-21 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 2 - 40 2.3e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 8 cut(s) 14, 56, 67, 113, 161, 185, 206, 212
AcoI YGGCCR 1 cut(s) 253
AcuI CTGAAG 2 cut(s) 156, 164
AcyI GRCGYC 3 cut(s) 53, 101, 227
AfiI CCNNNNNNNGG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 1 cut(s) 307
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AoxI GGCC 2 cut(s) 182, 253
ApeKI GCWGC 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 40, 49, 82
BanI GGYRCC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 170
BccI CCATC 3 cut(s) 100, 173, 266
BceAI ACGGC 1 cut(s) 268
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 56
BglII AGATCT 1 cut(s) 314
BisI GCNGC 3 cut(s) 56, 159, 185
BlsI GCNGC 3 cut(s) 57, 160, 186
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 54
BmsI GCATC 3 cut(s) 141, 199, 294
BsaHI GRCGYC 3 cut(s) 53, 101, 227
Bsc4I CCNNNNNNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 170
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 65
BshFI GGCC 2 cut(s) 184, 255
BshNI GGYRCC 1 cut(s) 52
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 2 cut(s) 184, 255
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 8 cut(s) 14, 56, 67, 113, 161, 185, 206, 212
BspANI GGCC 2 cut(s) 184, 255
BspLI GGNNCC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 132
BspT107I GGYRCC 1 cut(s) 52
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 3 cut(s) 53, 101, 227
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 3 cut(s) 53, 101, 227
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 12, 44, 156
BstF5I GGATG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 3 cut(s) 16, 52, 64
BstNSI RCATGY 2 cut(s) 14, 203
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 2 cut(s) 184, 255
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 12, 44, 156
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 182
CseI GACGC 2 cut(s) 109, 216
CviAII CATG 2 cut(s) 11, 200
CviJI RGCY 6 cut(s) 25, 119, 134, 142, 184, 255
CviKI_1 RGCY 6 cut(s) 25, 119, 134, 142, 184, 255
DinI GGCGCC 1 cut(s) 54
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
EciI GGCGGA 2 cut(s) 128, 221
Eco57I CTGAAG 2 cut(s) 156, 164
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaeI CATG 2 cut(s) 14, 203
FaiI YATR 4 cut(s) 12, 168, 201, 258
FalI AAGNNNNNCTT 1 cut(s) 304
FaqI GGGAC 1 cut(s) 112
FatI CATG 2 cut(s) 10, 199
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 56, 159, 185
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 56, 159, 185
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 54
GluI GCNGC 3 cut(s) 56, 159, 185
GsaI CCCAGC 1 cut(s) 23
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 184, 255
HgaI GACGC 2 cut(s) 109, 216
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 3 cut(s) 53, 101, 227
Hin1II CATG 2 cut(s) 14, 203
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 236
HphI GGTGA 3 cut(s) 40, 49, 82
Hpy166II GTNNAC 3 cut(s) 73, 250, 278
Hpy188I TCNGA 2 cut(s) 173, 232
Hpy8I GTNNAC 3 cut(s) 73, 250, 278
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 52, 64
Hsp92I GRCGYC 3 cut(s) 53, 101, 227
Hsp92II CATG 2 cut(s) 14, 203
HspAI GCGC 1 cut(s) 53
KasI GGCGCC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 314
LguI GCTCTTC 1 cut(s) 132
LpnPI CCDG 3 cut(s) 5, 11, 140
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 3 cut(s) 141, 199, 294
MaeI CTAG 1 cut(s) 87
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 314
MluCI AATT 1 cut(s) 259
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 3 cut(s) 24, 109, 226
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 16, 52, 64
NarI GGCGCC 1 cut(s) 53
NdeII GATC 1 cut(s) 314
NlaIII CATG 2 cut(s) 14, 203
NlaIV GGNNCC 1 cut(s) 54
NmeAIII GCCGAG 1 cut(s) 218
NspI RCATGY 2 cut(s) 14, 203
PaeI GCATGC 1 cut(s) 14
PciI ACATGT 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 3 cut(s) 57, 160, 186
PleI GAGTC 1 cut(s) 230
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 230
PscI ACATGT 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 314
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 56, 159, 185
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 230
SetI ASST 2 cut(s) 35, 144
SfaNI GCATC 3 cut(s) 141, 199, 294
SfoI GGCGCC 1 cut(s) 54
SphI GCATGC 1 cut(s) 14
Sse9I AATT 1 cut(s) 259
SsiI CCGC 8 cut(s) 14, 56, 67, 113, 161, 185, 206, 212
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 1 cut(s) 87
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 259
TauI GCSGC 2 cut(s) 58, 187
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseI GCWGC 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 262
XceI RCATGY 2 cut(s) 14, 203
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.