Rh7CG199800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000222
Physical Location & Seq
Reverse (-)
17766662 .. 17767156
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG199800.1

Sequence Viewer

Length: 495 bp
ATGAGAGTGGACCTAGTGTCCAGTATTGAGTGCTCTTGGAATAATCTCAGCCGGAGGGGTGGCTGCTTGGTGGTTTCGCTGTCTAAAAGAAGAGGAGGCTTTGCCAAGGAAGATCGGAGCAGATTCGGCGGTTGGTGGGTGGGATTGGGATCGATCTCACAGTGCGCAGTTGGCGAGCAGTCGGAGGTGATAGCGGAGGGTGGTGCGTTGACAGAATCTGAAGGATCCAGATCGGATCGGGGTGACCCGAGTTGGTTTGGGTCATTTGGAGTTGCGCTGTGGATTGGGGGTCGCGGCGATGCGTGCCGGTGTGTTGGGGAGTGTGGAGAGATGGGGGGATGGCCGGAGGCTGCTCGCTGCTGTGGGTTGGCCGCTGGTAGGTGGATGACACCGCTTTGTCTTGCAGATCGATGGCGAGGTGACGGGCCAGCTGGGTTGCGCCGATTGGTGTACCAAAAATTTATTAAAAAAAAGAAAAGAAAAAGGGTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.82

Weight (kDa)

9.49

Isoelectric Point (pI)

69.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 166
AccII CGCG 1 cut(s) 294
AciI CCGC 5 cut(s) 129, 194, 294, 372, 392
AclWI GGATC 4 cut(s) 157, 219, 232, 243
AcoI YGGCCR 2 cut(s) 341, 369
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 1 cut(s) 378
AhdI GACNNNNNGTC 1 cut(s) 16
AluBI AGCT 1 cut(s) 431
AluI AGCT 1 cut(s) 431
Alw21I GWGCWC 1 cut(s) 35
AlwI GGATC 4 cut(s) 157, 219, 232, 243
AlwNI CAGNNNCTG 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 3 cut(s) 341, 369, 425
ApeKI GCWGC 3 cut(s) 63, 350, 357
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 3 cut(s) 167, 277, 441
AspS9I GGNCC 2 cut(s) 10, 425
AsuHPI GGTGA 3 cut(s) 199, 254, 431
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 1 cut(s) 10
BamHI GGATCC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 3 cut(s) 50, 337, 344
BccI CCATC 3 cut(s) 325, 333, 405
BfaI CTAG 1 cut(s) 14
BisI GCNGC 5 cut(s) 64, 295, 351, 358, 372
BlsI GCNGC 5 cut(s) 65, 296, 352, 359, 373
Bme18I GGWCC 1 cut(s) 10
BmeRI GACNNNNNGTC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 10, 425
BmiI GGNNCC 1 cut(s) 226
BmsI GCATC 1 cut(s) 289
Bsa29I ATCGAT 2 cut(s) 152, 409
BsaBI GATNNNNATC 2 cut(s) 148, 229
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 21
Bse8I GATNNNNATC 2 cut(s) 148, 229
BseCI ATCGAT 2 cut(s) 152, 409
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 344, 390
BseJI GATNNNNATC 2 cut(s) 148, 229
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 50, 337, 344
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 3 cut(s) 343, 371, 427
BshVI ATCGAT 2 cut(s) 152, 409
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 3 cut(s) 52, 307, 344
BslI CCNNNNNNNGG 1 cut(s) 378
BsnI GGCC 3 cut(s) 343, 371, 427
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
BspACI CCGC 5 cut(s) 129, 194, 294, 372, 392
BspANI GGCC 3 cut(s) 343, 371, 427
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 2 cut(s) 152, 409
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 4 cut(s) 157, 219, 232, 243
BsrFI RCCGGY 1 cut(s) 306
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 85
BstC8I GCNNGC 4 cut(s) 176, 304, 355, 429
BstDEI CTNAG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 2 cut(s) 344, 390
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 3 cut(s) 167, 277, 441
BstKTI GATC 7 cut(s) 115, 152, 156, 227, 233, 238, 409
BstMBI GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
BstMWI GCNNNNNNNGC 3 cut(s) 126, 171, 303
BstPI GGTNACC 1 cut(s) 242
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 50, 337, 344
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu15I ATCGAT 2 cut(s) 152, 409
BsuRI GGCC 3 cut(s) 343, 371, 427
BsuTUI ATCGAT 2 cut(s) 152, 409
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 344, 390
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 4 cut(s) 176, 304, 355, 429
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 3 cut(s) 167, 277, 441
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 2 cut(s) 10, 425
ClaI ATCGAT 2 cut(s) 152, 409
Csp6I GTAC 1 cut(s) 451
CviJI RGCY 8 cut(s) 51, 63, 99, 343, 350, 371, 427, 431
CviKI_1 RGCY 8 cut(s) 51, 63, 99, 343, 350, 371, 427, 431
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 47
DpnI GATC 7 cut(s) 114, 151, 155, 226, 232, 237, 408
DpnII GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
DriI GACNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 341, 369
Eam1104I CTCTTC 1 cut(s) 85
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 247
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 64, 295, 351, 358, 372
FokI GGATG 2 cut(s) 351, 397
Fsp4HI GCNGC 5 cut(s) 64, 295, 351, 358, 372
FspBI CTAG 1 cut(s) 14
FspI TGCGCA 1 cut(s) 166
GlaI GCGC 3 cut(s) 166, 276, 440
GluI GCNGC 5 cut(s) 64, 295, 351, 358, 372
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 3 cut(s) 343, 371, 427
HapII CCGG 3 cut(s) 52, 307, 344
HhaI GCGC 3 cut(s) 167, 277, 441
Hin6I GCGC 3 cut(s) 165, 275, 439
HinP1I GCGC 3 cut(s) 165, 275, 439
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 2 cut(s) 123, 215
HpaII CCGG 3 cut(s) 52, 307, 344
HphI GGTGA 3 cut(s) 199, 254, 431
Hpy166II GTNNAC 3 cut(s) 10, 210, 451
Hpy188I TCNGA 4 cut(s) 117, 184, 220, 235
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 3 cut(s) 10, 210, 451
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 171, 303
HpyF3I CTNAG 1 cut(s) 47
HspAI GCGC 3 cut(s) 165, 275, 439
Kzo9I GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 8 cut(s) 34, 65, 241, 320, 357, 360, 417, 441
Lsp1109I GCAGC 3 cut(s) 50, 337, 344
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 242, 419
MalI GATC 7 cut(s) 114, 151, 155, 226, 232, 237, 408
MboI GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
MboII GAAGA 2 cut(s) 102, 122
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 7 cut(s) 48, 86, 89, 178, 190, 340, 410
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 2 cut(s) 374, 431
MspI CCGG 3 cut(s) 52, 307, 344
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 126, 171, 303
NdeII GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 242, 419
NsbI TGCGCA 1 cut(s) 166
PfeI GAWTC 2 cut(s) 123, 215
PkrI GCNGC 5 cut(s) 65, 296, 352, 359, 373
PspEI GGTNACC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 10, 425
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 5 cut(s) 64, 295, 351, 358, 372
Sau3AI GATC 7 cut(s) 112, 149, 153, 224, 230, 235, 406
Sau96I GGNCC 2 cut(s) 10, 425
SduI GDGCHC 1 cut(s) 35
SetI ASST 5 cut(s) 15, 189, 383, 421, 433
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 10
Sse9I AATT 1 cut(s) 458
SsiI CCGC 5 cut(s) 129, 194, 294, 372, 392
SspMI CTAG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 152, 409
TasI AATT 1 cut(s) 458
TauI GCSGC 2 cut(s) 297, 374
TfiI GAWTC 2 cut(s) 123, 215
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 2 cut(s) 242, 419
TseI GCWGC 3 cut(s) 63, 350, 357
Tsp45I GTSAC 2 cut(s) 242, 419
TspRI CASTG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 1 cut(s) 458
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.