Rh5DG534900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000222
Physical Location & Seq
Forward (+)
82406433 .. 82412900
6468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG534900.1

Sequence Viewer

Length: 506 bp
ATGAGAGTGGACCTCGTGTCCGGTGTTGAGTGTTTGTGGAATAATCCCAGTCGGAGGGGTGGCTGCTGGGTGGTTTCGCTGTCGAAACGGAGAGGAGGCTCTGCCGAGGAAGATCGGAGCAGGTTCGGCGGTTGGTGGGTGGGGTGGGGATCGATCTCACGGACCACGGTAGGCAGGCAGCCGGAGGTGACAGCGGTGGGTGGTGCGATGAATGAATCTGAGGGATCCAGATCGGATCGGGGTGACCCGAGTTGGTTTGGGTCTTTTGCAGTCGCGCTATGGATTGGGGGTGGCGGAGATGCGTGTCGGGCTGGTGAGGATGGCGGAAAGAGGGGGCACGACCGGAGGCTGCTTGGGGCGATCGGTTCCTGTGGAGGTGTCCCAGGACTGGATCTTAGGAACTTGACGGGAAGTGGTGTTGATGCCTGCAACTCTTTTGGTTCAGCCTTATTATGGAACTCTTCGCGGGTCGCCATCAAGATCCAGAAGCTTATCCCGTTAGCTCG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

17.66

Weight (kDa)

9.29

Isoelectric Point (pI)

63.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccII CGCG 2 cut(s) 275, 466
AciI CCGC 5 cut(s) 129, 194, 294, 324, 466
AclWI GGATC 6 cut(s) 157, 219, 232, 243, 399, 475
AfiI CCNNNNNNNGG 3 cut(s) 54, 388, 453
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 2 cut(s) 490, 503
AluI AGCT 2 cut(s) 490, 503
AlwI GGATC 6 cut(s) 157, 219, 232, 243, 399, 475
Ama87I CYCGRG 1 cut(s) 247
ApeKI GCWGC 3 cut(s) 63, 178, 349
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 2 cut(s) 10, 162
AsuHPI GGTGA 3 cut(s) 199, 254, 326
AvaI CYCGRG 1 cut(s) 247
AvaII GGWCC 2 cut(s) 10, 162
BaeGI GKGCMC 1 cut(s) 339
BamHI GGATCC 1 cut(s) 224
BauI CACGAG 1 cut(s) 14
BbvI GCAGC 3 cut(s) 50, 190, 336
BccI CCATC 2 cut(s) 314, 482
BciT130I CCWGG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 3 cut(s) 64, 179, 350
BlsI GCNGC 3 cut(s) 65, 180, 351
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 2 cut(s) 10, 162
BmeRI GACNNNNNGTC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 10, 162
BmiI GGNNCC 2 cut(s) 226, 367
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 289, 412
BmuI ACTGGG 1 cut(s) 42
BplI GAGNNNNNCTC 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 105, 165, 382
BsaWI WCCGGW 2 cut(s) 20, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 388, 453
Bse1I ACTGG 2 cut(s) 48, 393
Bse8I GATNNNNATC 1 cut(s) 229
BseBI CCWGG 1 cut(s) 384
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 105, 165, 382
BseGI GGATG 1 cut(s) 325
BseJI GATNNNNATC 1 cut(s) 229
BseLI CCNNNNNNNGG 3 cut(s) 54, 388, 453
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 48, 393
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 339
BseXI GCAGC 3 cut(s) 50, 190, 336
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 275, 466
Bsh1285I CGRYCG 2 cut(s) 343, 363
BshVI ATCGAT 1 cut(s) 152
BsiEI CGRYCG 2 cut(s) 343, 363
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 3 cut(s) 21, 182, 343
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 54, 388, 453
BsmFI GGGAC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
BspACI CCGC 5 cut(s) 129, 194, 294, 324, 466
BspCNI CTCAG 1 cut(s) 211
BspDI ATCGAT 1 cut(s) 152
BspFNI CGCG 2 cut(s) 275, 466
BspLI GGNNCC 2 cut(s) 226, 367
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 6 cut(s) 157, 219, 232, 243, 399, 475
BsrI ACTGG 2 cut(s) 48, 393
BssECI CCNNGG 3 cut(s) 105, 165, 382
BssMI GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
BssSI CACGAG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 466
BstC8I GCNNGC 2 cut(s) 176, 427
BstDEI CTNAG 2 cut(s) 219, 395
BstDSI CCRYGG 1 cut(s) 165
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 2 cut(s) 275, 466
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 9 cut(s) 115, 152, 156, 227, 233, 238, 363, 394, 483
BstMBI GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
BstMCI CGRYCG 2 cut(s) 343, 363
BstMWI GCNNNNNNNGC 2 cut(s) 126, 308
BstNI CCWGG 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 339
BstUI CGCG 2 cut(s) 275, 466
BstV1I GCAGC 3 cut(s) 50, 190, 336
BstX2I RGATCY 3 cut(s) 224, 391, 480
BstYI RGATCY 3 cut(s) 224, 391, 480
Bsu15I ATCGAT 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 325
BveI ACCTGC 1 cut(s) 111
Cac8I GCNNGC 2 cut(s) 176, 427
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 10, 162
ClaI ATCGAT 1 cut(s) 152
CviJI RGCY 8 cut(s) 63, 99, 181, 311, 349, 446, 490, 503
CviKI_1 RGCY 8 cut(s) 63, 99, 181, 311, 349, 446, 490, 503
DdeI CTNAG 2 cut(s) 219, 395
DpnI GATC 9 cut(s) 114, 151, 155, 226, 232, 237, 362, 393, 482
DpnII GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
DriI GACNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 466
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 466
EciI GGCGGA 2 cut(s) 309, 339
Eco47I GGWCC 2 cut(s) 10, 162
Eco88I CYCGRG 1 cut(s) 247
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 382
FaiI YATR 2 cut(s) 280, 454
FaqI GGGAC 1 cut(s) 365
FauI CCCGC 1 cut(s) 459
Fnu4HI GCNGC 3 cut(s) 64, 179, 350
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 3 cut(s) 64, 179, 350
GlaI GCGC 1 cut(s) 276
GluI GCNGC 3 cut(s) 64, 179, 350
GsaI CCCAGC 1 cut(s) 70
HapII CCGG 3 cut(s) 21, 182, 343
HhaI GCGC 1 cut(s) 277
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 1 cut(s) 215
HpaII CCGG 3 cut(s) 21, 182, 343
HphI GGTGA 3 cut(s) 199, 254, 326
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 4 cut(s) 54, 117, 220, 235
Hpy188III TCNNGA 3 cut(s) 228, 478, 484
Hpy8I GTNNAC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 269, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 308
HpyF3I CTNAG 2 cut(s) 219, 395
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 3 cut(s) 50, 190, 336
LweI GCATC 2 cut(s) 289, 412
MaeIII GTNAC 2 cut(s) 187, 242
MalI GATC 9 cut(s) 114, 151, 155, 226, 232, 237, 362, 393, 482
MboI GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
MboII GAAGA 2 cut(s) 122, 453
MflI RGATCY 3 cut(s) 224, 391, 480
MhlI GDGCHC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 3 cut(s) 21, 182, 343
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 2 cut(s) 275, 466
MwoI GCNNNNNNNGC 2 cut(s) 126, 308
NdeII GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
NlaIV GGNNCC 2 cut(s) 226, 367
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 2 cut(s) 187, 242
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 3 cut(s) 65, 180, 351
Ple19I CGATCG 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 382
PspEI GGTNACC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 226, 367
PspPI GGNCC 2 cut(s) 10, 162
PsuI RGATCY 3 cut(s) 224, 391, 480
PvuI CGATCG 1 cut(s) 363
SatI GCNGC 3 cut(s) 64, 179, 350
Sau3AI GATC 9 cut(s) 112, 149, 153, 224, 230, 235, 360, 391, 480
Sau96I GGNCC 2 cut(s) 10, 162
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 339
SetI ASST 6 cut(s) 15, 125, 189, 379, 492, 505
SfaNI GCATC 2 cut(s) 289, 412
SinI GGWCC 2 cut(s) 10, 162
SsiI CCGC 5 cut(s) 129, 194, 294, 324, 466
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 83, 152
TfiI GAWTC 1 cut(s) 215
TseFI GTSAC 2 cut(s) 187, 242
TseI GCWGC 3 cut(s) 63, 178, 349
Tsp45I GTSAC 2 cut(s) 187, 242
TspDTI ATGAA 2 cut(s) 224, 228
TspGWI ACGGA 2 cut(s) 103, 175
VpaK11BI GGWCC 2 cut(s) 10, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.