Rmu_sc0003321.1_g000025

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003321.1
OG0000222
Physical Location & Seq
Reverse (-)
98290 .. 100486
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003321.1_g000025.1.cds

Sequence Viewer

Length: 822 bp
atggctccaccactgtgtagaagtctctattctaaccctcttgatagcggcattgatgcaatcacggcgtgccacttcgccaaccatggccctctcatcatcgtgatcgccgatgtccaagatgccaagggccgagaagtcgccgcatccatcagctccccccgctgcacctacgtccactgtgacgtcaccgacgaggtgcagacggtgctggagctggacctgtcatggttcgataaggtgatggcggtgaacacccatgggatggtggggaaaggagtcagaggcagtatagtgtgcacggcgagcttagcggcgcagtacgggtcagagaccgcgactgactacactatgttgaagcacgcggtactggggctggtgaggtcagcgagcttgcagctggcggtgggtagggtgctcctgaactacgtgtcgcctggtgtggtggggacgccgatggtgagcgagtcttctaagattgggacggaagagctgaaggagatgatagcatcgtcggggtggaggttgcatggtggcttcaccgtaaaaaaagagaagaggttttgcaaggaagatcggagtaggttcggcggttgttgggtggggcggggatcaatctcacagtgtgcgataggcggtcagctggaggtgacaacggtgggtggtgcgatgacggaatccgagggatccagatcggatcggagtgacccgagttggtttgggtcatttggagtcgtgctgtggattggggctggtggagatgagtgctggcatgttgcggagggtggagagatggggggacagcctgaggctactcggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

273

Amino Acids

28.96

Weight (kDa)

5.66

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 2 cut(s) 338, 365
AclWI GGATC 4 cut(s) 619, 681, 694, 705
AcuI CTGAAG 1 cut(s) 515
AcyI GRCGYC 2 cut(s) 186, 452
AdeI CACNNNGTG 2 cut(s) 69, 626
AfaI GTAC 2 cut(s) 323, 369
AfiI CCNNNNNNNGG 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 1 cut(s) 436
AleI CACNNNNGTG 1 cut(s) 13
AluBI AGCT 7 cut(s) 156, 217, 309, 393, 400, 493, 643
AluI AGCT 7 cut(s) 156, 217, 309, 393, 400, 493, 643
Alw21I GWGCWC 2 cut(s) 302, 420
Alw26I GTCTC 2 cut(s) 29, 326
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 4 cut(s) 619, 681, 694, 705
Ama87I CYCGRG 1 cut(s) 709
AoxI GGCC 2 cut(s) 88, 130
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 165, 397
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 3 cut(s) 89, 130, 220
AsuHPI GGTGA 7 cut(s) 181, 253, 262, 391, 472, 532, 661
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 1 cut(s) 220
AxyI CCTNAGG 1 cut(s) 807
BaeGI GKGCMC 1 cut(s) 302
BamHI GGATCC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 302, 420
BbvI GCAGC 2 cut(s) 152, 409
BccI CCATC 5 cut(s) 158, 238, 259, 451, 787
BceAI ACGGC 2 cut(s) 81, 318
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 29, 326
BisI GCNGC 5 cut(s) 49, 144, 166, 315, 398
BlpI GCTNAGC 1 cut(s) 310
BlsI GCNGC 5 cut(s) 50, 145, 167, 316, 399
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 709
BmgT120I GGNCC 3 cut(s) 89, 130, 220
BmiI GGNNCC 2 cut(s) 6, 688
BmrFI CCNGG 1 cut(s) 438
BmrI ACTGGG 1 cut(s) 380
BmsI GCATC 4 cut(s) 46, 112, 155, 518
BmuI ACTGGG 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 2 cut(s) 233, 665
Bpu1102I GCTNAGC 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 691
BsaHI GRCGYC 2 cut(s) 186, 452
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 4 cut(s) 85, 126, 259, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 375
Bse21I CCTNAGG 1 cut(s) 807
Bse8I GATNNNNATC 1 cut(s) 691
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 4 cut(s) 85, 126, 259, 681
BseGI GGATG 2 cut(s) 146, 270
BseJI GATNNNNATC 1 cut(s) 691
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 1 cut(s) 375
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 152, 409
BsgI GTGCAG 2 cut(s) 151, 221
Bsh1236I CGCG 2 cut(s) 338, 365
BshFI GGCC 2 cut(s) 90, 132
BsiHKAI GWGCWC 2 cut(s) 302, 420
BsiHKCI CYCGRG 1 cut(s) 709
BslFI GGGAC 3 cut(s) 463, 496, 813
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 29, 326
BsmFI GGGAC 3 cut(s) 463, 496, 813
BsnI GGCC 2 cut(s) 90, 132
Bso31I GGTCTC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 302, 420
Bsp143I GATC 6 cut(s) 105, 574, 611, 686, 692, 697
Bsp1720I GCTNAGC 1 cut(s) 310
Bsp19I CCATGG 2 cut(s) 85, 259
BspANI GGCC 2 cut(s) 90, 132
BspCNI CTCAG 1 cut(s) 799
BspFNI CGCG 2 cut(s) 338, 365
BspLI GGNNCC 2 cut(s) 6, 688
BspPI GGATC 4 cut(s) 619, 681, 694, 705
BspQI GCTCTTC 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 4 cut(s) 85, 126, 259, 681
BssMI GATC 6 cut(s) 105, 574, 611, 686, 692, 697
BssNI GRCGYC 2 cut(s) 186, 452
BssT1I CCWWGG 3 cut(s) 85, 126, 259
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 6 cut(s) 15, 182, 208, 544, 624, 658
Bst6I CTCTTC 2 cut(s) 483, 551
BstACI GRCGYC 2 cut(s) 186, 452
BstAPI GCANNNNNTGC 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 7 cut(s) 70, 307, 363, 391, 395, 402, 770
BstDEI CTNAG 3 cut(s) 310, 474, 807
BstDSI CCRYGG 2 cut(s) 85, 259
BstF5I GGATG 2 cut(s) 146, 270
BstFNI CGCG 2 cut(s) 338, 365
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 6 cut(s) 108, 577, 614, 689, 695, 700
BstMAI GTCTC 2 cut(s) 29, 326
BstMBI GATC 6 cut(s) 105, 574, 611, 686, 692, 697
BstMWI GCNNNNNNNGC 5 cut(s) 65, 162, 208, 306, 311
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 776
BstSCI CCNGG 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 2 cut(s) 338, 365
BstV1I GCAGC 2 cut(s) 152, 409
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 2 cut(s) 90, 132
BtgI CCRYGG 2 cut(s) 85, 259
BtgZI GCGATG 1 cut(s) 683
BtsCI GGATG 2 cut(s) 146, 270
BtsIMutI CAGTG 3 cut(s) 11, 178, 629
Cac8I GCNNGC 7 cut(s) 70, 307, 363, 391, 395, 402, 770
CfoI GCGC 1 cut(s) 319
Cfr13I GGNCC 3 cut(s) 89, 130, 220
CseI GACGC 1 cut(s) 460
Csp6I GTAC 2 cut(s) 322, 368
CviAII CATG 5 cut(s) 86, 228, 260, 530, 773
CviQI GTAC 2 cut(s) 322, 368
DdeI CTNAG 3 cut(s) 310, 474, 807
DpnI GATC 6 cut(s) 107, 576, 613, 688, 694, 699
DpnII GATC 6 cut(s) 105, 574, 611, 686, 692, 697
DraIII CACNNNGTG 2 cut(s) 69, 626
Eam1104I CTCTTC 2 cut(s) 483, 551
EarI CTCTTC 2 cut(s) 483, 551
Eco130I CCWWGG 3 cut(s) 85, 126, 259
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 515
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 709
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 3 cut(s) 85, 126, 259
ErhI CCWWGG 3 cut(s) 85, 126, 259
FaeI CATG 5 cut(s) 89, 231, 263, 533, 776
FaiI YATR 7 cut(s) 87, 229, 261, 293, 353, 531, 774
FaqI GGGAC 3 cut(s) 463, 496, 813
FatI CATG 5 cut(s) 85, 227, 259, 529, 772
FauI CCCGC 2 cut(s) 170, 600
Fnu4HI GCNGC 5 cut(s) 49, 144, 166, 315, 398
FokI GGATG 2 cut(s) 133, 277
Fsp4HI GCNGC 5 cut(s) 49, 144, 166, 315, 398
GlaI GCGC 1 cut(s) 318
GluI GCNGC 5 cut(s) 49, 144, 166, 315, 398
GsuI CTGGAG 2 cut(s) 233, 665
HaeIII GGCC 2 cut(s) 90, 132
HgaI GACGC 1 cut(s) 460
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 2 cut(s) 186, 452
Hin1II CATG 5 cut(s) 89, 231, 263, 533, 776
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 4 cut(s) 279, 467, 677, 732
HphI GGTGA 7 cut(s) 181, 253, 262, 391, 472, 532, 661
Hpy166II GTNNAC 3 cut(s) 178, 253, 300
Hpy188I TCNGA 6 cut(s) 284, 331, 579, 682, 697, 702
Hpy188III TCNNGA 4 cut(s) 41, 103, 421, 690
Hpy8I GTNNAC 3 cut(s) 178, 253, 300
Hpy99I CGWCG 2 cut(s) 197, 517
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 6 cut(s) 15, 182, 208, 544, 624, 658
HpyCH4IV ACGT 3 cut(s) 174, 186, 429
HpyCH4V TGCA 7 cut(s) 59, 168, 202, 300, 397, 529, 567
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 162, 208, 306, 311
HpyF3I CTNAG 3 cut(s) 310, 474, 807
HpySE526I ACGT 3 cut(s) 174, 186, 429
Hsp92I GRCGYC 2 cut(s) 186, 452
Hsp92II CATG 5 cut(s) 89, 231, 263, 533, 776
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 6 cut(s) 105, 574, 611, 686, 692, 697
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 4 cut(s) 10, 161, 214, 423
Lsp1109I GCAGC 2 cut(s) 152, 409
LweI GCATC 4 cut(s) 46, 112, 155, 518
MaeII ACGT 3 cut(s) 174, 186, 429
MaeIII GTNAC 4 cut(s) 182, 187, 649, 704
MalI GATC 6 cut(s) 107, 576, 613, 688, 694, 699
MboI GATC 6 cut(s) 105, 574, 611, 686, 692, 697
MboII GAAGA 4 cut(s) 462, 500, 568, 584
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 2 cut(s) 302, 420
MlyI GAGTC 3 cut(s) 288, 476, 741
MslI CAYNNNNRTG 2 cut(s) 13, 101
MspA1I CMGCKG 3 cut(s) 165, 400, 643
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 2 cut(s) 338, 365
MwoI GCNNNNNNNGC 5 cut(s) 65, 162, 208, 306, 311
NcoI CCATGG 2 cut(s) 85, 259
NdeII GATC 6 cut(s) 105, 574, 611, 686, 692, 697
NlaIII CATG 5 cut(s) 89, 231, 263, 533, 776
NlaIV GGNNCC 2 cut(s) 6, 688
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 4 cut(s) 182, 187, 649, 704
NspI RCATGY 1 cut(s) 776
OliI CACNNNNGTG 1 cut(s) 13
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 192
PfeI GAWTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 5 cut(s) 50, 145, 167, 316, 399
PleI GAGTC 3 cut(s) 287, 475, 740
PpsI GAGTC 3 cut(s) 287, 475, 740
Ppu21I YACGTR 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 6, 688
PspPI GGNCC 3 cut(s) 89, 130, 220
PsuI RGATCY 1 cut(s) 686
PvuII CAGCTG 2 cut(s) 400, 643
RsaI GTAC 2 cut(s) 323, 369
RsaNI GTAC 2 cut(s) 322, 368
RseI CAYNNNNRTG 2 cut(s) 13, 101
SapI GCTCTTC 1 cut(s) 483
SatI GCNGC 5 cut(s) 49, 144, 166, 315, 398
Sau3AI GATC 6 cut(s) 105, 574, 611, 686, 692, 697
Sau96I GGNCC 3 cut(s) 89, 130, 220
SchI GAGTC 3 cut(s) 288, 476, 741
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 2 cut(s) 302, 420
SfaNI GCATC 4 cut(s) 46, 112, 155, 518
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 13, 101
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 3 cut(s) 85, 126, 259
TaaI ACNGT 6 cut(s) 15, 182, 208, 544, 624, 658
TaiI ACGT 3 cut(s) 177, 189, 432
TaqI TCGA 1 cut(s) 234
TauI GCSGC 3 cut(s) 51, 146, 317
TfiI GAWTC 1 cut(s) 677
TscAI CASTG 3 cut(s) 18, 185, 629
TseFI GTSAC 4 cut(s) 182, 187, 649, 704
TseI GCWGC 2 cut(s) 165, 397
Tsp45I GTSAC 4 cut(s) 182, 187, 649, 704
TspGWI ACGGA 2 cut(s) 500, 689
TspRI CASTG 3 cut(s) 18, 185, 629
Van91I CCANNNNNTGG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 220
XceI RCATGY 1 cut(s) 776
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.