Rh7DG454300

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000222
Physical Location & Seq
Forward (+)
64612627 .. 64620668
8042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG454300.1

Sequence Viewer

Length: 813 bp
ATGACACATCCCATACCAGTAAAACTGCAGAAGCTCCACGGCAAGGTTGCTATAGTCACTGGCGCCGCCAGCGGTATCGGAGCAGTCACGGCGCGCCACTTCGCAGACCACGGCGCTCTCGCAGTCGTGATCGCTGACGTCCAAGACGCCAAGGGCCGAGAAGTGGCTGCATCAATAGGCTCCCACCGCTGCACCTACGTCCACTGCGACGTCACCGACGAGGATCAGGTCAAGTCCCTTGTCGAGTTCACGGTCAAGCACTACGGCAGCCTCGACGTCATGTACAGCAACGCGGGGATAAGCAGCGCGTTGGGTCAGACGGTGCTGGAGCTCGACCTGTCCGGGTACGACAGGGTGATGGCGGTGAATGCGCGCGGAATGGCGGCGTGTGTGAAGCACGCGGCGCGTGCGATGGTGGAGAAGGGGGTGAAGGGGAGCATAGTGTGCACGGGGAGCTTTTTGGCTGACTGCGGGGCGGAGAGCTTGACGGACTACACGATGTCGAAGCATGCGGTGCTGGGGCTGGTGAGGTCGGCAAGCGTGCAGCTGGCACCGCTTGGTGTGCGCGTGAACTGCGTGTCGCCTGGTTTTGTGGGGACGCCGATGGTGGCGGAGGCTTTTAAGATTGGGGCGGAAGAGCTGAAGGAGATGATGGCAGCGGTTTATATCGGAAGAGATGGGCCGCTGATGGAGAAACATGTGGCGGATGCGGTGGTGTTTTTGGCGTCTGAGGACTCGGCGTTTGTCACCGGCCATAATTTGGTGGTTGATGGTGGACTTGGCCTCAAGTCCTTATCATTATTGAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

270

Amino Acids

28.13

Weight (kDa)

6.4

Isoelectric Point (pI)

18.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 206 5.1e-47 short chain dehydrogenase
KR PF08659 18 - 174 1.8e-07 KR domain
adh_short_C2 PF13561 21 - 260 1.3e-61 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 141, 213, 279
AccB1I GGYRCC 2 cut(s) 62, 550
AccB7I CCANNNNNTGG 1 cut(s) 760
AccII CGCG 8 cut(s) 94, 293, 308, 373, 375, 401, 406, 567
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 1 cut(s) 751
AcuI CTGAAG 1 cut(s) 662
AcyI GRCGYC 7 cut(s) 63, 138, 147, 210, 276, 599, 725
AfaI GTAC 2 cut(s) 284, 347
AfiI CCNNNNNNNGG 3 cut(s) 43, 163, 760
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 1 cut(s) 805
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 6 cut(s) 34, 331, 456, 483, 547, 640
AluI AGCT 6 cut(s) 34, 331, 456, 483, 547, 640
Alw21I GWGCWC 2 cut(s) 333, 449
Alw44I GTGCAC 1 cut(s) 445
AlwI GGATC 1 cut(s) 231
AoxI GGCC 4 cut(s) 154, 680, 751, 781
ApaLI GTGCAC 1 cut(s) 445
ApeKI GCWGC 6 cut(s) 167, 189, 267, 303, 544, 656
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
AscI GGCGCGCC 1 cut(s) 92
AspLEI GCGC 9 cut(s) 65, 94, 96, 116, 308, 373, 375, 406, 567
AspS9I GGNCC 2 cut(s) 154, 680
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 6 cut(s) 205, 367, 376, 439, 538, 739
BaeGI GKGCMC 1 cut(s) 449
BanI GGYRCC 2 cut(s) 62, 550
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 2 cut(s) 333, 449
BbvI GCAGC 6 cut(s) 154, 176, 279, 315, 556, 668
BccI CCATC 7 cut(s) 352, 406, 598, 646, 671, 682, 764
BceAI ACGGC 4 cut(s) 55, 105, 127, 280
BciT130I CCWGG 1 cut(s) 585
BcnI CCSGG 1 cut(s) 343
BfmI CTRYAG 2 cut(s) 26, 51
BfoI RGCGCY 2 cut(s) 66, 117
Bme1390I CCNGG 2 cut(s) 343, 585
BmgT120I GGNCC 2 cut(s) 154, 680
BmiI GGNNCC 3 cut(s) 64, 181, 552
BmrFI CCNGG 2 cut(s) 343, 585
BmsI GCATC 2 cut(s) 179, 697
BpmI CTGGAG 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 343
BsaHI GRCGYC 7 cut(s) 63, 138, 147, 210, 276, 599, 725
BsaJI CCNNGG 3 cut(s) 37, 109, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 163, 760
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 2 cut(s) 17, 64
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 3 cut(s) 37, 109, 150
BseGI GGATG 2 cut(s) 7, 712
BseLI CCNNNNNNNGG 3 cut(s) 43, 163, 760
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 2 cut(s) 17, 64
BsePI GCGCGC 2 cut(s) 92, 371
BseSI GKGCMC 1 cut(s) 449
BseXI GCAGC 6 cut(s) 154, 176, 279, 315, 556, 668
BseYI CCCAGC 1 cut(s) 517
BsgI GTGCAG 2 cut(s) 175, 563
Bsh1236I CGCG 8 cut(s) 94, 293, 308, 373, 375, 401, 406, 567
BshFI GGCC 4 cut(s) 156, 682, 753, 783
BshNI GGYRCC 2 cut(s) 62, 550
BsiHKAI GWGCWC 2 cut(s) 333, 449
BsiSI CCGG 2 cut(s) 342, 750
BslFI GGGAC 2 cut(s) 220, 610
BslI CCNNNNNNNGG 3 cut(s) 43, 163, 760
BsmFI GGGAC 2 cut(s) 220, 610
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 4 cut(s) 156, 682, 753, 783
Bsp1286I GDGCHC 2 cut(s) 333, 449
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 129, 223
BspANI GGCC 4 cut(s) 156, 682, 753, 783
BspCNI CTCAG 1 cut(s) 721
BspFNI CGCG 8 cut(s) 94, 293, 308, 373, 375, 401, 406, 567
BspLI GGNNCC 3 cut(s) 64, 181, 552
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 630
BspT107I GGYRCC 2 cut(s) 62, 550
BsrFI RCCGGY 1 cut(s) 749
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 17, 64
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 3 cut(s) 37, 109, 150
BssHII GCGCGC 2 cut(s) 92, 371
BssMI GATC 2 cut(s) 129, 223
BssNI GRCGYC 7 cut(s) 63, 138, 147, 210, 276, 599, 725
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 253, 322
Bst6I CTCTTC 2 cut(s) 630, 667
BstACI GRCGYC 7 cut(s) 63, 138, 147, 210, 276, 599, 725
BstAPI GCANNNNNTGC 2 cut(s) 444, 514
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 9 cut(s) 70, 94, 373, 399, 408, 510, 538, 542, 549
BstDEI CTNAG 1 cut(s) 729
BstDSI CCRYGG 2 cut(s) 37, 109
BstF5I GGATG 2 cut(s) 7, 712
BstFNI CGCG 8 cut(s) 94, 293, 308, 373, 375, 401, 406, 567
BstH2I RGCGCY 2 cut(s) 66, 117
BstHHI GCGC 9 cut(s) 65, 94, 96, 116, 308, 373, 375, 406, 567
BstKTI GATC 2 cut(s) 132, 226
BstMBI GATC 2 cut(s) 129, 223
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 2 cut(s) 512, 701
BstSCI CCNGG 2 cut(s) 341, 583
BstSFI CTRYAG 2 cut(s) 26, 51
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 8 cut(s) 94, 293, 308, 373, 375, 401, 406, 567
BstV1I GCAGC 6 cut(s) 154, 176, 279, 315, 556, 668
BsuRI GGCC 4 cut(s) 156, 682, 753, 783
BtgI CCRYGG 2 cut(s) 37, 109
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 7, 712
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 57, 202
Cac8I GCNNGC 9 cut(s) 70, 94, 373, 399, 408, 510, 538, 542, 549
CfoI GCGC 9 cut(s) 65, 94, 96, 116, 308, 373, 375, 406, 567
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 2 cut(s) 154, 680
CseI GACGC 3 cut(s) 155, 607, 714
Csp6I GTAC 2 cut(s) 283, 346
CviAII CATG 4 cut(s) 280, 509, 698, 810
CviQI GTAC 2 cut(s) 283, 346
DdeI CTNAG 1 cut(s) 729
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 131, 225
DpnII GATC 2 cut(s) 129, 223
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 2 cut(s) 630, 667
EarI CTCTTC 2 cut(s) 630, 667
EciI GGCGGA 4 cut(s) 491, 626, 647, 719
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 662
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 333
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 4 cut(s) 283, 512, 701, 813
FaiI YATR 9 cut(s) 14, 53, 281, 440, 510, 666, 699, 756, 811
FaqI GGGAC 2 cut(s) 220, 610
FatI CATG 4 cut(s) 279, 508, 697, 809
FauI CCCGC 2 cut(s) 286, 464
FokI GGATG 1 cut(s) 719
FriOI GRGCYC 1 cut(s) 333
GlaI GCGC 9 cut(s) 64, 93, 95, 115, 307, 372, 374, 405, 566
GsaI CCCAGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 2 cut(s) 66, 117
HaeIII GGCC 4 cut(s) 156, 682, 753, 783
HapII CCGG 2 cut(s) 342, 750
HgaI GACGC 3 cut(s) 155, 607, 714
HhaI GCGC 9 cut(s) 65, 94, 96, 116, 308, 373, 375, 406, 567
Hin1I GRCGYC 7 cut(s) 63, 138, 147, 210, 276, 599, 725
Hin1II CATG 4 cut(s) 283, 512, 701, 813
Hin6I GCGC 9 cut(s) 63, 92, 94, 114, 306, 371, 373, 404, 565
HinP1I GCGC 9 cut(s) 63, 92, 94, 114, 306, 371, 373, 404, 565
HinfI GANTC 1 cut(s) 734
HpaII CCGG 2 cut(s) 342, 750
HphI GGTGA 6 cut(s) 205, 367, 376, 439, 538, 739
Hpy166II GTNNAC 5 cut(s) 202, 249, 447, 571, 776
Hpy188I TCNGA 4 cut(s) 80, 318, 671, 730
Hpy188III TCNNGA 1 cut(s) 127
Hpy8I GTNNAC 5 cut(s) 202, 249, 447, 571, 776
Hpy99I CGWCG 3 cut(s) 212, 221, 278
HpyAV CCTTC 3 cut(s) 415, 424, 637
HpyCH4III ACNGT 2 cut(s) 253, 322
HpyCH4IV ACGT 4 cut(s) 138, 198, 210, 276
HpyCH4V TGCA 5 cut(s) 28, 170, 192, 447, 544
HpyF3I CTNAG 1 cut(s) 729
HpySE526I ACGT 4 cut(s) 138, 198, 210, 276
Hsp92I GRCGYC 7 cut(s) 63, 138, 147, 210, 276, 599, 725
Hsp92II CATG 4 cut(s) 283, 512, 701, 813
HspAI GCGC 9 cut(s) 63, 92, 94, 114, 306, 371, 373, 404, 565
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 129, 223
LguI GCTCTTC 1 cut(s) 630
LmnI GCTCC 6 cut(s) 39, 80, 185, 328, 435, 453
Lsp1109I GCAGC 6 cut(s) 154, 176, 279, 315, 556, 668
LweI GCATC 2 cut(s) 179, 697
MaeII ACGT 4 cut(s) 138, 198, 210, 276
MaeIII GTNAC 4 cut(s) 55, 85, 211, 745
MalI GATC 2 cut(s) 131, 225
MboI GATC 2 cut(s) 129, 223
MboII GAAGA 2 cut(s) 647, 684
MhlI GDGCHC 2 cut(s) 333, 449
MluCI AATT 1 cut(s) 757
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 728
MnlI CCTC 6 cut(s) 214, 281, 522, 607, 724, 794
MseI TTAA 1 cut(s) 621
MspA1I CMGCKG 5 cut(s) 72, 189, 547, 659, 685
MspI CCGG 2 cut(s) 342, 750
MspR9I CCNGG 2 cut(s) 343, 585
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 585
MvnI CGCG 8 cut(s) 94, 293, 308, 373, 375, 401, 406, 567
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 343
NdeII GATC 2 cut(s) 129, 223
NlaIII CATG 4 cut(s) 283, 512, 701, 813
NlaIV GGNNCC 3 cut(s) 64, 181, 552
NmeAIII GCCGAG 2 cut(s) 182, 716
NmuCI GTSAC 4 cut(s) 55, 85, 211, 745
NspI RCATGY 2 cut(s) 512, 701
PaeI GCATGC 1 cut(s) 512
PalAI GGCGCGCC 1 cut(s) 92
PauI GCGCGC 2 cut(s) 92, 371
PciI ACATGT 1 cut(s) 697
PciSI GCTCTTC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 4 cut(s) 204, 216, 270, 494
PctI GAATGC 1 cut(s) 373
PflMI CCANNNNNTGG 1 cut(s) 760
PleI GAGTC 1 cut(s) 728
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 728
PscI ACATGT 1 cut(s) 697
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 517
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 3 cut(s) 64, 181, 552
PspPI GGNCC 2 cut(s) 154, 680
PstI CTGCAG 1 cut(s) 30
PteI GCGCGC 2 cut(s) 92, 371
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 2 cut(s) 284, 347
RsaNI GTAC 2 cut(s) 283, 346
SacI GAGCTC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 630
SaqAI TTAA 1 cut(s) 621
Sau3AI GATC 2 cut(s) 129, 223
Sau96I GGNCC 2 cut(s) 154, 680
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 2 cut(s) 343, 585
SduI GDGCHC 2 cut(s) 333, 449
SfaNI GCATC 2 cut(s) 179, 697
SfcI CTRYAG 2 cut(s) 26, 51
SfoI GGCGCC 1 cut(s) 64
SgsI GGCGCGCC 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
SphI GCATGC 1 cut(s) 512
Sse9I AATT 1 cut(s) 757
SspDI GGCGCC 1 cut(s) 62
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 341, 583
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 253, 322
TaiI ACGT 4 cut(s) 141, 201, 213, 279
TaqI TCGA 4 cut(s) 243, 273, 333, 503
TasI AATT 1 cut(s) 757
TatI WGTACW 1 cut(s) 282
TauI GCSGC 4 cut(s) 68, 386, 404, 685
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 2 cut(s) 64, 209
TseFI GTSAC 4 cut(s) 55, 85, 211, 745
TseI GCWGC 6 cut(s) 167, 189, 267, 303, 544, 656
Tsp45I GTSAC 4 cut(s) 55, 85, 211, 745
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 2 cut(s) 64, 209
Van91I CCANNNNNTGG 1 cut(s) 760
VneI GTGCAC 1 cut(s) 445
XceI RCATGY 2 cut(s) 512, 701
ZraI GACGTC 3 cut(s) 139, 211, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.