RchiOBHm_Chr7g0234561

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000222
Physical Location & Seq
Reverse (-)
59241108 .. 59241371
264 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21019

Sequence Viewer

Length: 264 bp
ATGGCGGTGAACGCCCATGGGATGGTGGGGAAAGGAGTCAGAGGCAGTATAGTGTGCACGGCGAGCTTAGCGGCGCAGTACGGGTCAGAGACCGCGACGGACTACTCTATGTTGAAGCACGCGGTACTGGGGCTGGTGAGGTCAGCGATTGTGCAGCTGGCGGTGCGTAGGGTGCGCCTGAACTACGTGTCGCCTGGTGTGGTGGGGACGCCGTTGGTGAGCGAGTCTTCTAAGTTGGGACGGAAGAGCTGCAGGAGACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

87

Amino Acids

9.2

Weight (kDa)

10.95

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 5 - 77 3.4e-13 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 8 - 76 3.7e-12 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AccII CGCG 2 cut(s) 95, 122
AciI CCGC 5 cut(s) 5, 71, 93, 122, 161
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 2 cut(s) 80, 126
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 3 cut(s) 66, 157, 249
AluI AGCT 3 cut(s) 66, 157, 249
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 83, 250
Alw44I GTGCAC 1 cut(s) 55
ApaLI GTGCAC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 154, 249
AspLEI GCGC 2 cut(s) 76, 177
AsuHPI GGTGA 3 cut(s) 19, 148, 229
BaeGI GKGCMC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 166, 236
BccI CCATC 1 cut(s) 16
BceAI ACGGC 2 cut(s) 75, 196
BciT130I CCWGG 1 cut(s) 195
BcoDI GTCTC 2 cut(s) 83, 250
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 3 cut(s) 72, 155, 250
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 73, 156, 251
Bme1390I CCNGG 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 2 cut(s) 166, 236
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 95, 122
BsiHKAI GWGCWC 1 cut(s) 59
BslFI GGGAC 2 cut(s) 220, 252
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 83, 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 220, 252
Bso31I GGTCTC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 59
Bsp1720I GCTNAGC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 5 cut(s) 5, 71, 93, 122, 161
BspFNI CGCG 2 cut(s) 95, 122
BspMAI CTGCAG 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 239
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 209
BstBAI YACGTR 1 cut(s) 187
BstC8I GCNNGC 3 cut(s) 64, 120, 159
BstDEI CTNAG 2 cut(s) 67, 231
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 27
BstFNI CGCG 2 cut(s) 95, 122
BstHHI GCGC 2 cut(s) 76, 177
BstMAI GTCTC 2 cut(s) 83, 250
BstMWI GCNNNNNNNGC 5 cut(s) 11, 63, 68, 163, 172
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 2 cut(s) 95, 122
BstV1I GCAGC 2 cut(s) 166, 236
BstV2I GAAGAC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 27
Cac8I GCNNGC 3 cut(s) 64, 120, 159
CfoI GCGC 2 cut(s) 76, 177
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 79, 125
CviAII CATG 1 cut(s) 17
CviJI RGCY 4 cut(s) 66, 133, 157, 249
CviKI_1 RGCY 4 cut(s) 66, 133, 157, 249
CviQI GTAC 2 cut(s) 79, 125
DdeI CTNAG 2 cut(s) 67, 231
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 1 cut(s) 20
FaiI YATR 3 cut(s) 18, 50, 110
FaqI GGGAC 2 cut(s) 220, 252
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 72, 155, 250
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 72, 155, 250
GlaI GCGC 2 cut(s) 75, 176
GluI GCNGC 3 cut(s) 72, 155, 250
HgaI GACGC 1 cut(s) 217
HhaI GCGC 2 cut(s) 76, 177
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 2 cut(s) 74, 175
HinP1I GCGC 2 cut(s) 74, 175
HinfI GANTC 2 cut(s) 36, 224
HphI GGTGA 3 cut(s) 19, 148, 229
Hpy166II GTNNAC 2 cut(s) 10, 57
Hpy188I TCNGA 2 cut(s) 41, 88
Hpy8I GTNNAC 2 cut(s) 10, 57
Hpy99I CGWCG 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 57, 154, 252
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 63, 68, 163, 172
HpyF3I CTNAG 2 cut(s) 67, 231
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 2 cut(s) 74, 175
LguI GCTCTTC 1 cut(s) 239
LpnPI CCDG 7 cut(s) 113, 119, 143, 180, 191, 207, 238
Lsp1109I GCAGC 2 cut(s) 166, 236
MaeII ACGT 1 cut(s) 186
MboII GAAGA 2 cut(s) 219, 256
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 2 cut(s) 45, 233
MnlI CCTC 2 cut(s) 35, 132
MspA1I CMGCKG 1 cut(s) 157
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 2 cut(s) 95, 122
MwoI GCNNNNNNNGC 5 cut(s) 11, 63, 68, 163, 172
NcoI CCATGG 1 cut(s) 16
NlaIII CATG 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 3 cut(s) 73, 156, 251
PleI GAGTC 2 cut(s) 44, 232
PpsI GAGTC 2 cut(s) 44, 232
Ppu21I YACGTR 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PstI CTGCAG 1 cut(s) 254
PvuII CAGCTG 1 cut(s) 157
RsaI GTAC 2 cut(s) 80, 126
RsaNI GTAC 2 cut(s) 79, 125
SapI GCTCTTC 1 cut(s) 239
SatI GCNGC 3 cut(s) 72, 155, 250
SchI GAGTC 2 cut(s) 45, 233
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 68, 143, 159, 189, 251
SfcI CTRYAG 1 cut(s) 250
SsiI CCGC 5 cut(s) 5, 71, 93, 122, 161
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 16
TaiI ACGT 1 cut(s) 189
TauI GCSGC 1 cut(s) 74
TseI GCWGC 2 cut(s) 154, 249
TspGWI ACGGA 2 cut(s) 113, 256
Van91I CCANNNNNTGG 1 cut(s) 22
VneI GTGCAC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.