Rmu_sc0001428.1_g000008

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001428.1
OG0000222
Physical Location & Seq
Forward (+)
33411 .. 33704
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001428.1_g000008.1.cds

Sequence Viewer

Length: 294 bp
ctgccccggcggtggcagttttgcttatcttcagctttcgccagtggtatcggagcaatcacggcgagtcactttgcagaccacggcgctctcgcagtcgtgatagctgacgtccaagacgccagggaccgagaagtggcggtatccatcgtctcccaccgctgcacctacgtccactgcgacatcaccgataaggatcaggtcaagtcccttgttgtgttcacggtcaagcactacagcagcctcgacgtcacgcagtggcagacgcacataaggacgagtgggggccactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

97

Amino Acids

10.69

Weight (kDa)

7.21

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 114, 252
AciI CCGC 3 cut(s) 10, 140, 160
AclWI GGATC 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 15
AcyI GRCGYC 3 cut(s) 111, 120, 249
AdeI CACNNNGTG 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 12, 136
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 2 cut(s) 35, 107
AluI AGCT 2 cut(s) 35, 107
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 2 cut(s) 162, 240
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 127, 286
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 149, 252
BccI CCATC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 78, 100
BciT130I CCWGG 1 cut(s) 124
BciVI GTATCC 1 cut(s) 154
BcnI CCSGG 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 90
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 2 cut(s) 163, 241
BlsI GCNGC 2 cut(s) 164, 242
Bme1390I CCNGG 2 cut(s) 7, 124
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 2 cut(s) 127, 286
BmiI GGNNCC 2 cut(s) 128, 287
BmrFI CCNGG 2 cut(s) 7, 124
BpuMI CCSGG 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 3 cut(s) 111, 120, 249
BsaJI CCNNGG 3 cut(s) 5, 82, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 136
Bse1I ACTGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 3 cut(s) 5, 82, 123
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 2 cut(s) 12, 136
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 149, 252
BsgI GTGCAG 1 cut(s) 148
BshFI GGCC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 2 cut(s) 140, 193
BslI CCNNNNNNNGG 2 cut(s) 12, 136
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 140, 193
BsnI GGCC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 3 cut(s) 10, 140, 160
BspANI GGCC 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 128, 287
BspPI GGATC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 5, 82, 123
BssMI GATC 1 cut(s) 196
BssNI GRCGYC 3 cut(s) 111, 120, 249
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 3 cut(s) 111, 120, 249
BstDSI CCRYGG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 5, 122
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 149, 252
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 82
BtsI GCAGTG 2 cut(s) 175, 263
BtsIMutI CAGTG 4 cut(s) 49, 175, 263, 289
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 127, 286
CseI GACGC 2 cut(s) 128, 274
CviJI RGCY 4 cut(s) 35, 107, 243, 288
CviKI_1 RGCY 4 cut(s) 35, 107, 243, 288
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraIII CACNNNGTG 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 157
FaiI YATR 1 cut(s) 272
FaqI GGGAC 2 cut(s) 140, 193
Fnu4HI GCNGC 2 cut(s) 163, 241
Fsp4HI GCNGC 2 cut(s) 163, 241
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 163, 241
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 7
HgaI GACGC 2 cut(s) 128, 274
HhaI GCGC 1 cut(s) 89
Hin1I GRCGYC 3 cut(s) 111, 120, 249
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 175, 222
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 2 cut(s) 175, 222
Hpy99I CGWCG 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 3 cut(s) 111, 171, 249
HpyCH4V TGCA 2 cut(s) 77, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpySE526I ACGT 3 cut(s) 111, 171, 249
Hsp92I GRCGYC 3 cut(s) 111, 120, 249
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 5 cut(s) 20, 55, 109, 136, 185
Lsp1109I GCAGC 2 cut(s) 149, 252
MaeII ACGT 3 cut(s) 111, 171, 249
MaeIII GTNAC 2 cut(s) 68, 250
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 21
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 7, 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 62
NciI CCSGG 1 cut(s) 7
NdeII GATC 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 128, 287
NmuCI GTSAC 2 cut(s) 68, 250
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PkrI GCNGC 2 cut(s) 164, 242
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 2 cut(s) 128, 287
PspPI GGNCC 2 cut(s) 127, 286
SatI GCNGC 2 cut(s) 163, 241
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 127, 286
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 7, 124
SetI ASST 7 cut(s) 37, 109, 114, 170, 174, 204, 252
SfcI CTRYAG 1 cut(s) 235
SinI GGWCC 1 cut(s) 127
SsiI CCGC 3 cut(s) 10, 140, 160
StyD4I CCNGG 2 cut(s) 5, 122
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 3 cut(s) 114, 174, 252
TaqI TCGA 1 cut(s) 246
TaqII GACCGA 1 cut(s) 144
TscAI CASTG 3 cut(s) 49, 182, 263
TseFI GTSAC 2 cut(s) 68, 250
TseI GCWGC 2 cut(s) 162, 240
Tsp45I GTSAC 2 cut(s) 68, 250
TspRI CASTG 3 cut(s) 49, 182, 263
VpaK11BI GGWCC 1 cut(s) 127
ZraI GACGTC 2 cut(s) 112, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.