RchiOBHm_Chr7g0242121

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000222
Physical Location & Seq
Forward (+)
68252770 .. 68253168
399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21700

Sequence Viewer

Length: 210 bp
ATGGTGTGCGACACATTGAAGATTAGTGCGGAACAGCTGCGAGAGAAAATGGCAGCGATTTATTCGGGAAGGGATGAACCGCTGATGGAGAAAAACGTGGCGGATGCGGTGGTGTTTTTGGCTTGTGAGGACTCGGCGTTCGTCACCGGCCATAATTTGGTGGTTGATGGTGGACTTGGCACCAAGACCATAGCTATATTGGAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

69

Amino Acids

7.43

Weight (kDa)

4.53

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 29 - 59 2.9e-07 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 157
AciI CCGC 4 cut(s) 29, 80, 101, 107
AcoI YGGCCR 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 1 cut(s) 19
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 37, 194
AluI AGCT 2 cut(s) 37, 194
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 37, 53
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AsuHPI GGTGA 1 cut(s) 136
BanI GGYRCC 1 cut(s) 179
BbvI GCAGC 2 cut(s) 24, 65
BccI CCATC 2 cut(s) 79, 161
BisI GCNGC 2 cut(s) 38, 54
BlsI GCNGC 2 cut(s) 39, 55
BmiI GGNNCC 1 cut(s) 181
BmsI GCATC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 146
BseGI GGATG 2 cut(s) 79, 109
BseLI CCNNNNNNNGG 1 cut(s) 157
BseXI GCAGC 2 cut(s) 24, 65
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 1 cut(s) 150
BspACI CCGC 4 cut(s) 29, 80, 101, 107
BspANI GGCC 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BstF5I GGATG 2 cut(s) 79, 109
BstV1I GCAGC 2 cut(s) 24, 65
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 79, 109
Cfr10I RCCGGY 1 cut(s) 146
CviJI RGCY 4 cut(s) 37, 122, 150, 194
CviKI_1 RGCY 4 cut(s) 37, 122, 150, 194
EaeI YGGCCR 1 cut(s) 148
EciI GGCGGA 1 cut(s) 116
FaiI YATR 3 cut(s) 153, 191, 197
Fnu4HI GCNGC 2 cut(s) 38, 54
FokI GGATG 2 cut(s) 86, 116
Fsp4HI GCNGC 2 cut(s) 38, 54
GluI GCNGC 2 cut(s) 38, 54
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 147
HinfI GANTC 1 cut(s) 131
HpaII CCGG 1 cut(s) 147
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 173
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 96
LpnPI CCDG 1 cut(s) 160
Lsp1109I GCAGC 2 cut(s) 24, 65
LweI GCATC 1 cut(s) 94
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 1 cut(s) 31
MluCI AATT 1 cut(s) 154
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 1 cut(s) 121
MspA1I CMGCKG 2 cut(s) 37, 82
MspI CCGG 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 181
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 2 cut(s) 39, 55
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 37
SatI GCNGC 2 cut(s) 38, 54
SchI GAGTC 1 cut(s) 125
SetI ASST 3 cut(s) 39, 99, 196
SfaNI GCATC 1 cut(s) 94
SgeI CNNG 8 cut(s) 53, 78, 109, 135, 145, 159, 188, 196
Sse9I AATT 1 cut(s) 154
SsiI CCGC 4 cut(s) 29, 80, 101, 107
TaiI ACGT 1 cut(s) 99
TasI AATT 1 cut(s) 154
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 37, 53
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.