Rroxscaffold_3G00222930

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000222
Physical Location & Seq
Reverse (-)
6010844 .. 6011245
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222930.1

Sequence Viewer

Length: 402 bp
ATGTACAGCAACGCGGGGATAACCAGCGCTTCGGCGCAGACGTTGCTGGAGCTCGACCTGTCCGGGTACGACAGGGTGATGGCGGTGAACGCGCGAGGAATGGCGGCGTGTGTGAAGTACGCGGCGATTGTGATGGTGGAGAAGGGGGTGAAAGGGAGCATAGTGTGCACGGCTAGCTTTTTGGCTGACTGCGGGTCGGAGAGCGTGACGGACTACACGATGTCGAAGCACGTGGTGCTGGGGCTTGTGAGGTCGGCGAGCGTGCAGCTGGCGCCGCTTGGTGTGCGGGTGAACTGCGTGTCGCCGAGTTTTGTGGGGACGCCGATGGTGGCGGAGATTTTTAAGATTGGGGCGGAAGAGCTGAAGGAGATGATGGCATGCAGCGGTTTATACCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

133

Amino Acids

14.0

Weight (kDa)

7.59

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 2 - 115 3.6e-25 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 2 - 114 6e-21 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AccII CGCG 4 cut(s) 14, 92, 94, 122
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 1 cut(s) 232
AcyI GRCGYC 2 cut(s) 272, 320
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 3 cut(s) 5, 68, 119
AfeI AGCGCT 1 cut(s) 28
AhdI GACNNNNNGTC 1 cut(s) 193
AluBI AGCT 4 cut(s) 52, 177, 268, 361
AluI AGCT 4 cut(s) 52, 177, 268, 361
Alw21I GWGCWC 2 cut(s) 54, 170
Alw44I GTGCAC 1 cut(s) 166
Aor51HI AGCGCT 1 cut(s) 28
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 265, 381
AspLEI GCGC 4 cut(s) 29, 37, 94, 274
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 4 cut(s) 88, 97, 160, 301
AsuNHI GCTAGC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 54, 170
BbvI GCAGC 2 cut(s) 277, 393
BccI CCATC 4 cut(s) 73, 127, 319, 367
BceAI ACGGC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 174
BfoI RGCGCY 2 cut(s) 30, 275
BisI GCNGC 5 cut(s) 105, 123, 266, 275, 382
BlsI GCNGC 5 cut(s) 106, 124, 267, 276, 383
Bme1390I CCNGG 1 cut(s) 64
BmeRI GACNNNNNGTC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 64
BmtI GCTAGC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 272, 320
BsaWI WCCGGW 1 cut(s) 393
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 2 cut(s) 277, 393
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 4 cut(s) 14, 92, 94, 122
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 54, 170
BsiSI CCGG 2 cut(s) 63, 394
BslFI GGGAC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 331
Bsp1286I GDGCHC 2 cut(s) 54, 170
Bsp1407I TGTACA 1 cut(s) 3
BspFNI CGCG 4 cut(s) 14, 92, 94, 122
BspLI GGNNCC 1 cut(s) 273
BspOI GCTAGC 1 cut(s) 177
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 3
BssNI GRCGYC 2 cut(s) 272, 320
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 2 cut(s) 272, 320
BstAPI GCANNNNNTGC 3 cut(s) 43, 165, 235
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 5 cut(s) 175, 259, 263, 270, 379
BstFNI CGCG 4 cut(s) 14, 92, 94, 122
BstH2I RGCGCY 2 cut(s) 30, 275
BstHHI GCGC 4 cut(s) 29, 37, 94, 274
BstMWI GCNNNNNNNGC 8 cut(s) 43, 89, 165, 174, 235, 271, 274, 283
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 4 cut(s) 14, 92, 94, 122
BstV1I GCAGC 2 cut(s) 277, 393
Cac8I GCNNGC 5 cut(s) 175, 259, 263, 270, 379
CfoI GCGC 4 cut(s) 29, 37, 94, 274
CseI GACGC 1 cut(s) 328
Csp6I GTAC 3 cut(s) 4, 67, 118
CviAII CATG 1 cut(s) 378
CviJI RGCY 7 cut(s) 52, 173, 177, 185, 244, 268, 361
CviKI_1 RGCY 7 cut(s) 52, 173, 177, 185, 244, 268, 361
CviQI GTAC 3 cut(s) 4, 67, 118
DinI GGCGCC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 235
DriI GACNNNNNGTC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 351
Eam1105I GACNNNNNGTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 351
EciI GGCGGA 2 cut(s) 347, 368
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco47III AGCGCT 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
FaeI CATG 1 cut(s) 381
FaiI YATR 3 cut(s) 161, 379, 391
FaqI GGGAC 1 cut(s) 331
FatI CATG 1 cut(s) 377
FauI CCCGC 3 cut(s) 7, 185, 279
Fnu4HI GCNGC 5 cut(s) 105, 123, 266, 275, 382
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 5 cut(s) 105, 123, 266, 275, 382
FspBI CTAG 1 cut(s) 174
GlaI GCGC 4 cut(s) 28, 36, 93, 273
GluI GCNGC 5 cut(s) 105, 123, 266, 275, 382
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 68
HaeII RGCGCY 2 cut(s) 30, 275
HapII CCGG 2 cut(s) 63, 394
HgaI GACGC 1 cut(s) 328
HhaI GCGC 4 cut(s) 29, 37, 94, 274
Hin1I GRCGYC 2 cut(s) 272, 320
Hin1II CATG 1 cut(s) 381
Hin6I GCGC 4 cut(s) 27, 35, 92, 272
HinP1I GCGC 4 cut(s) 27, 35, 92, 272
HpaII CCGG 2 cut(s) 63, 394
HphI GGTGA 4 cut(s) 88, 97, 160, 301
Hpy166II GTNNAC 3 cut(s) 88, 168, 292
Hpy188I TCNGA 1 cut(s) 199
Hpy8I GTNNAC 3 cut(s) 88, 168, 292
HpyAV CCTTC 2 cut(s) 136, 358
HpyCH4IV ACGT 2 cut(s) 41, 231
HpyCH4V TGCA 3 cut(s) 168, 265, 381
HpyF10VI GCNNNNNNNGC 8 cut(s) 43, 89, 165, 174, 235, 271, 274, 283
HpySE526I ACGT 2 cut(s) 41, 231
Hsp92I GRCGYC 2 cut(s) 272, 320
Hsp92II CATG 1 cut(s) 381
HspAI GCGC 4 cut(s) 27, 35, 92, 272
KasI GGCGCC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 49, 156
LpnPI CCDG 7 cut(s) 32, 37, 58, 71, 76, 224, 254
Lsp1109I GCAGC 2 cut(s) 277, 393
MaeI CTAG 1 cut(s) 174
MaeII ACGT 2 cut(s) 41, 231
MaeIII GTNAC 1 cut(s) 205
MboII GAAGA 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 54, 170
Mly113I GGCGCC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 2 cut(s) 89, 243
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 2 cut(s) 268, 384
MspI CCGG 2 cut(s) 63, 394
MspR9I CCNGG 1 cut(s) 64
MvnI CGCG 4 cut(s) 14, 92, 94, 122
MwoI GCNNNNNNNGC 8 cut(s) 43, 89, 165, 174, 235, 271, 274, 283
NarI GGCGCC 1 cut(s) 272
NciI CCSGG 1 cut(s) 64
NheI GCTAGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 1 cut(s) 273
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 381
PaeI GCATGC 1 cut(s) 381
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 215
PkrI GCNGC 5 cut(s) 106, 124, 267, 276, 383
PluTI GGCGCC 1 cut(s) 275
PmaCI CACGTG 1 cut(s) 232
PmlI CACGTG 1 cut(s) 232
Ppu21I YACGTR 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 54
PspCI CACGTG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 3 cut(s) 5, 68, 119
RsaNI GTAC 3 cut(s) 4, 67, 118
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 5 cut(s) 105, 123, 266, 275, 382
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 54, 170
SetI ASST 8 cut(s) 44, 54, 60, 179, 234, 254, 270, 363
SfoI GGCGCC 1 cut(s) 273
SphI GCATGC 1 cut(s) 381
SspDI GGCGCC 1 cut(s) 271
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 62
TaiI ACGT 2 cut(s) 44, 234
TaqI TCGA 2 cut(s) 54, 224
TatI WGTACW 1 cut(s) 3
TauI GCSGC 3 cut(s) 107, 125, 277
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 265, 381
Tsp45I GTSAC 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 224
VneI GTGCAC 1 cut(s) 166
XceI RCATGY 1 cut(s) 381
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.