pycom06g16660

(-)-isopiperitenol (-)-carveol dehydrogenase, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000222
Physical Location & Seq
Forward (+)
20851298 .. 20851627
330 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16660.1

Sequence Viewer

Length: 330 bp
ATGGCGGACCACAAAGTCGACAGAGTCTCAATCAGCCAAACCATCAAAAAGCTTCAAGGAAAGGTCGCAGTCGTTACTGGTGGCGCCAGTGGCATCGGTGAAGCCACCGCACGGAAATTTGCCTTGCATGGCGCACGTGCCGTGGTTACCGCCGATGTCCAGTACGACAAAGGCCAAAACGTAGCAGCATCGATCGGTCATGACCGCTCCACTTACATCCAGTGCCACGTGGCCGACGAGGAACACAGTCAAGAACTACGGCCGCCTCGATGTGATGTTCATCAACGCCGGCATTTGCTGCACGTCACAGCAGACCTTAATGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

110

Amino Acids

11.82

Weight (kDa)

8.69

Isoelectric Point (pI)

26.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 21 - 85 8.9e-11 short chain dehydrogenase
adh_short_C2 PF13561 28 - 86 3.3e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 83
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 18
AciI CCGC 5 cut(s) 5, 108, 150, 205, 263
AcoI YGGCCR 2 cut(s) 231, 260
AcsI RAATTY 1 cut(s) 116
AcvI CACGTG 2 cut(s) 137, 229
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 56
AjiI CACGTC 1 cut(s) 304
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 31
AoxI GGCC 3 cut(s) 172, 231, 260
ApeKI GCWGC 2 cut(s) 185, 298
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 2 cut(s) 86, 134
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 83
BbrPI CACGTG 2 cut(s) 137, 229
BbvI GCAGC 2 cut(s) 197, 285
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 125, 275
BcoDI GTCTC 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 3 cut(s) 186, 263, 299
BlsI GCNGC 3 cut(s) 187, 264, 300
Bme18I GGWCC 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 2 cut(s) 102, 197
Bsa29I ATCGAT 1 cut(s) 191
BsaAI YACGTR 2 cut(s) 137, 229
BsaBI GATNNNNATC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 4 cut(s) 82, 87, 160, 220
Bse8I GATNNNNATC 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 216
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 111
BseNI ACTGG 4 cut(s) 82, 87, 160, 220
BseX3I CGGCCG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 197, 285
BsgI GTGCAG 1 cut(s) 284
Bsh1285I CGRYCG 2 cut(s) 195, 263
BshFI GGCC 3 cut(s) 174, 233, 262
BshNI GGYRCC 1 cut(s) 83
BshVI ATCGAT 1 cut(s) 191
BsiEI CGRYCG 2 cut(s) 195, 263
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 3 cut(s) 174, 233, 262
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 5 cut(s) 5, 108, 150, 205, 263
BspANI GGCC 3 cut(s) 174, 233, 262
BspDI ATCGAT 1 cut(s) 191
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 4 cut(s) 82, 87, 160, 220
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 298
BstBAI YACGTR 2 cut(s) 137, 229
BstC8I GCNNGC 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 145
BstF5I GGATG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 86, 134
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 192
BstMCI CGRYCG 2 cut(s) 195, 263
BstMWI GCNNNNNNNGC 2 cut(s) 90, 298
BstPI GGTNACC 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 197, 285
BstZI CGGCCG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 191
BsuRI GGCC 3 cut(s) 174, 233, 262
BsuTUI ATCGAT 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 141
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 94, 227
Cac8I GCNNGC 1 cut(s) 290
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 86, 134
Cfr10I RCCGGY 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 7
ClaI ATCGAT 1 cut(s) 191
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 128, 200
CviJI RGCY 6 cut(s) 36, 52, 104, 174, 233, 262
CviKI_1 RGCY 6 cut(s) 36, 52, 104, 174, 233, 262
CviQI GTAC 1 cut(s) 163
DinI GGCGCC 1 cut(s) 85
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 2 cut(s) 231, 260
EagI CGGCCG 1 cut(s) 260
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 7
Eco52I CGGCCG 1 cut(s) 260
Eco72I CACGTG 2 cut(s) 137, 229
Eco91I GGTNACC 1 cut(s) 145
EcoO65I GGTNACC 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
FaeI CATG 2 cut(s) 131, 203
FaiI YATR 2 cut(s) 129, 201
FatI CATG 2 cut(s) 127, 199
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 186, 263, 299
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 3 cut(s) 186, 263, 299
GlaI GCGC 2 cut(s) 85, 133
GluI GCNGC 3 cut(s) 186, 263, 299
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 3 cut(s) 174, 233, 262
HapII CCGG 1 cut(s) 289
HhaI GCGC 2 cut(s) 86, 134
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 2 cut(s) 131, 203
Hin6I GCGC 2 cut(s) 84, 132
HinP1I GCGC 2 cut(s) 84, 132
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 24
HpaII CCGG 1 cut(s) 289
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 200, 251
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 4 cut(s) 136, 180, 228, 303
HpyCH4V TGCA 2 cut(s) 127, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 298
HpySE526I ACGT 4 cut(s) 136, 180, 228, 303
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 2 cut(s) 131, 203
HspAI GCGC 2 cut(s) 84, 132
KasI GGCGCC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 288
KroNI GCCGGC 1 cut(s) 290
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 63, 100, 173, 233, 302
Lsp1109I GCAGC 2 cut(s) 197, 285
LweI GCATC 2 cut(s) 102, 197
MaeII ACGT 4 cut(s) 136, 180, 228, 303
MaeIII GTNAC 3 cut(s) 73, 145, 304
MalI GATC 1 cut(s) 194
MbiI CCGCTC 1 cut(s) 207
MboI GATC 1 cut(s) 192
MluCI AATT 1 cut(s) 116
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 2 cut(s) 232, 276
MroNI GCCGGC 1 cut(s) 288
MseI TTAA 1 cut(s) 318
MspI CCGG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 90, 298
NaeI GCCGGC 1 cut(s) 290
NarI GGCGCC 1 cut(s) 84
NdeII GATC 1 cut(s) 192
NgoMIV GCCGGC 1 cut(s) 288
NlaIII CATG 2 cut(s) 131, 203
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 304
PagI TCATGA 1 cut(s) 199
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 265
PdiI GCCGGC 1 cut(s) 290
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 3 cut(s) 187, 264, 300
Ple19I CGATCG 1 cut(s) 195
PleI GAGTC 1 cut(s) 32
PluTI GGCGCC 1 cut(s) 87
PmaCI CACGTG 2 cut(s) 137, 229
PmlI CACGTG 2 cut(s) 137, 229
PpsI GAGTC 1 cut(s) 32
Ppu21I YACGTR 2 cut(s) 137, 229
PspCI CACGTG 2 cut(s) 137, 229
PspEI GGTNACC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 23
PvuI CGATCG 1 cut(s) 195
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 3 cut(s) 186, 263, 299
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 1 cut(s) 33
SetI ASST 7 cut(s) 54, 66, 139, 183, 231, 306, 318
SfaNI GCATC 2 cut(s) 102, 197
SfoI GGCGCC 1 cut(s) 85
SinI GGWCC 1 cut(s) 7
Sse9I AATT 1 cut(s) 116
SsiI CCGC 5 cut(s) 5, 108, 150, 205, 263
SspDI GGCGCC 1 cut(s) 83
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 4 cut(s) 139, 183, 231, 306
TaqI TCGA 3 cut(s) 18, 191, 268
TaqII GACCGA 1 cut(s) 185
TasI AATT 1 cut(s) 116
TauI GCSGC 1 cut(s) 265
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 94, 227
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 185, 298
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 2 cut(s) 94, 227
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.