RchiOBHm_Chr7g0242301

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000222
Physical Location & Seq
Forward (+)
68438228 .. 68438545
318 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21717

Sequence Viewer

Length: 318 bp
ATGTCGAAGCACGCAATGCTGGGGCTGATGAGGTCGGCGAGCGTGCAGCTGGTGAAGCATGGGGTGCGCGTGAACTGCGTGTCGCCGGGTCTGGTGGCAACGCCGCTGGTGACTGAGATTTTCAAGCTCGGGGCGGAGGAGCTGAGCAAAATGATGGCGGCGGTTTATACGGGAAGCCAATATGGGCCGGTGAAGGAGAAAGACCTGGCGGATGCAGTGGTGTTCTTGGCCTCTGAGGACTCAGCGTTGATCACCGGCCAGAATTTGGTTGTTGATGGTGGACATGAAACCAAGGCCTTATCACTATTGAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

105

Amino Acids

11.07

Weight (kDa)

6.82

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 1 - 94 4.2e-22 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 2 - 41 5.9e-08 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 1 cut(s) 69
AciI CCGC 5 cut(s) 104, 134, 158, 161, 209
AcoI YGGCCR 1 cut(s) 256
AcsI RAATTY 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 2 cut(s) 124, 310
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 49, 127, 142
AluI AGCT 3 cut(s) 49, 127, 142
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 4 cut(s) 185, 228, 256, 294
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 262
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 4 cut(s) 64, 121, 202, 244
AvaI CYCGRG 1 cut(s) 128
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 148, 269
BciT130I CCWGG 1 cut(s) 206
BclI TGATCA 1 cut(s) 249
BcnI CCSGG 1 cut(s) 87
BisI GCNGC 3 cut(s) 47, 104, 159
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 3 cut(s) 48, 105, 160
Bme1390I CCNGG 2 cut(s) 87, 206
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 2 cut(s) 87, 206
BmsI GCATC 1 cut(s) 202
Bpu1102I GCTNAGC 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse118I RCCGGY 2 cut(s) 187, 254
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 4 cut(s) 105, 134, 225, 255
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 4 cut(s) 187, 230, 258, 296
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 3 cut(s) 86, 188, 255
BslI CCNNNNNNNGG 1 cut(s) 265
BsnI GGCC 4 cut(s) 187, 230, 258, 296
BsoBI CYCGRG 1 cut(s) 128
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 143
BspACI CCGC 5 cut(s) 104, 134, 158, 161, 209
BspANI GGCC 4 cut(s) 187, 230, 258, 296
BspCNI CTCAG 4 cut(s) 106, 135, 226, 254
BspFNI CGCG 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 21
BsrFI RCCGGY 2 cut(s) 187, 254
BssAI RCCGGY 2 cut(s) 187, 254
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 206
BstAPI GCANNNNNTGC 2 cut(s) 16, 64
BstC8I GCNNGC 3 cut(s) 12, 40, 44
BstDEI CTNAG 4 cut(s) 114, 143, 234, 241
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 16, 55, 64, 75
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 85, 204
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 4 cut(s) 187, 230, 258, 296
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 3 cut(s) 12, 40, 44
CfoI GCGC 1 cut(s) 69
Cfr10I RCCGGY 2 cut(s) 187, 254
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 3 cut(s) 59, 284, 315
CviJI RGCY 9 cut(s) 25, 49, 127, 142, 177, 187, 230, 258, 296
CviKI_1 RGCY 9 cut(s) 25, 49, 127, 142, 177, 187, 230, 258, 296
DdeI CTNAG 4 cut(s) 114, 143, 234, 241
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 256
EciI GGCGGA 2 cut(s) 149, 224
Eco130I CCWWGG 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 62, 287, 318
FaiI YATR 5 cut(s) 60, 168, 183, 285, 316
FatI CATG 3 cut(s) 58, 283, 314
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 47, 104, 159
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 3 cut(s) 47, 104, 159
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 47, 104, 159
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 4 cut(s) 187, 230, 258, 296
HapII CCGG 3 cut(s) 86, 188, 255
HhaI GCGC 1 cut(s) 69
Hin1II CATG 3 cut(s) 62, 287, 318
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 1 cut(s) 239
HpaII CCGG 3 cut(s) 86, 188, 255
HphI GGTGA 4 cut(s) 64, 121, 202, 244
Hpy166II GTNNAC 2 cut(s) 73, 281
Hpy188I TCNGA 1 cut(s) 235
Hpy8I GTNNAC 2 cut(s) 73, 281
HpyAV CCTTC 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 46, 215
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 55, 64, 75
HpyF3I CTNAG 4 cut(s) 114, 143, 234, 241
Hsp92II CATG 3 cut(s) 62, 287, 318
HspAI GCGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MluCI AATT 1 cut(s) 262
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 4 cut(s) 24, 130, 229, 241
MspA1I CMGCKG 2 cut(s) 49, 106
MspI CCGG 3 cut(s) 86, 188, 255
MspR9I CCNGG 2 cut(s) 87, 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 4 cut(s) 16, 55, 64, 75
NciI CCSGG 1 cut(s) 87
NdeII GATC 1 cut(s) 249
NlaIII CATG 3 cut(s) 62, 287, 318
NmuCI GTSAC 1 cut(s) 109
PceI AGGCCT 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 3 cut(s) 48, 105, 160
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 49
SatI GCNGC 3 cut(s) 47, 104, 159
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 87, 206
SetI ASST 5 cut(s) 35, 51, 129, 144, 207
SfaNI GCATC 1 cut(s) 202
Sse9I AATT 1 cut(s) 262
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 5 cut(s) 104, 134, 158, 161, 209
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 85, 204
StyI CCWWGG 1 cut(s) 291
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 262
TauI GCSGC 2 cut(s) 106, 161
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 265
XapI RAATTY 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.