RchiOBHm_Chr7g0242291

oxidation-reduction process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000222
Physical Location & Seq
Forward (+)
68422675 .. 68423268
594 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21716

Sequence Viewer

Length: 594 bp
ATGACTGAGGCCATACCAGTACCACTGCAGAAGCTCCGCGGCAAGGTGGCCATCGTCACCGGCGCCGCCAGCGGCATCGGAGCAGTCACTGCTCGCCATTTCGCAAATCACGGCTCTCTCACCGTCGTAATCGCCGACGTGCAAGACGGCAAAGGCCGAGAAGTGGCCGCATCGATCAGTTCTAACCGCTGCACCTACGTCCACTGCGACGTCACCGACGAGCACCAGGTCAAATACCTAGTTGACTCTACTGTGAAGCTGTACGGCCGCCTCGACGTGATGTACAGCAACGCGGGAATAACCCCCCCGTCGGCGCAGACTGTGCTGGAGCTGGACCTGTCCTTGTTCGACAAGGTGATGGCGGTGAACGCGAGAGGGATGGCGGCGTGTGTGATGCACGCGGCTCGCGCGATGGTAGAGAAGGGAGTTAGAGGCAGCATAGTGTGCACCGCGAGCGTTCAGGCGGATTGCGGGACGGAGAGCATGACGGACTACACGTGTTTGGCTCCAAAACCAGCTGGTGTGCAAACAGTCTCTTTTGAGCGAGTGGTTGCGCAGGCGTGCCAGCACCGCGGGGTGCAGTCGTTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

197

Amino Acids

20.72

Weight (kDa)

7.62

Isoelectric Point (pI)

26.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 167 2.8e-32 short chain dehydrogenase
KR PF08659 17 - 166 1.9e-08 KR domain
adh_short_C2 PF13561 21 - 166 2.6e-30 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
Acc16I TGCGCA 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 62
AccII CGCG 8 cut(s) 39, 293, 371, 401, 408, 410, 452, 573
AcoI YGGCCR 3 cut(s) 48, 165, 265
AcvI CACGTG 1 cut(s) 498
AcyI GRCGYC 2 cut(s) 63, 210
AfaI GTAC 3 cut(s) 21, 263, 284
AfiI CCNNNNNNNGG 3 cut(s) 43, 163, 310
AflIII ACRYGT 2 cut(s) 495, 497
AjiI CACGTC 2 cut(s) 139, 277
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 4 cut(s) 34, 259, 331, 518
AluI AGCT 4 cut(s) 34, 259, 331, 518
Alw21I GWGCWC 2 cut(s) 225, 449
Alw26I GTCTC 1 cut(s) 538
Alw44I GTGCAC 1 cut(s) 445
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 5 cut(s) 9, 48, 154, 165, 265
ApaLI GTGCAC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 189, 435
AspLEI GCGC 4 cut(s) 65, 316, 410, 556
AspS9I GGNCC 1 cut(s) 334
AsuHPI GGTGA 5 cut(s) 49, 112, 205, 367, 376
AvaII GGWCC 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 62
BbrPI CACGTG 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 225, 449
BbvI GCAGC 2 cut(s) 176, 447
BccI CCATC 4 cut(s) 59, 352, 373, 406
BceAI ACGGC 3 cut(s) 127, 163, 280
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 9 cut(s) 40, 66, 73, 168, 190, 268, 384, 402, 436
BlsI GCNGC 9 cut(s) 41, 67, 74, 169, 191, 269, 385, 403, 437
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 334
BmgBI CACGTC 2 cut(s) 139, 277
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 2 cut(s) 64, 507
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 3 cut(s) 84, 179, 384
BpmI CTGGAG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 498
BsaHI GRCGYC 2 cut(s) 63, 210
BsaJI CCNNGG 2 cut(s) 37, 571
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 163, 310
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 37, 571
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 43, 163, 310
BseNI ACTGG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 449
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 176, 447
BsgI GTGCAG 1 cut(s) 175
Bsh1236I CGCG 8 cut(s) 39, 293, 371, 401, 408, 410, 452, 573
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 5 cut(s) 11, 50, 156, 167, 267
BshNI GGYRCC 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 225, 449
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 3 cut(s) 43, 163, 310
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 5 cut(s) 11, 50, 156, 167, 267
Bsp1286I GDGCHC 2 cut(s) 225, 449
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 174
BspANI GGCC 5 cut(s) 11, 50, 156, 167, 267
BspDI ATCGAT 1 cut(s) 173
BspFNI CGCG 8 cut(s) 39, 293, 371, 401, 408, 410, 452, 573
BspLI GGNNCC 2 cut(s) 64, 507
BspMAI CTGCAG 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 37, 571
BssMI GATC 1 cut(s) 174
BssNI GRCGYC 2 cut(s) 63, 210
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 4 cut(s) 124, 253, 322, 532
BstACI GRCGYC 2 cut(s) 63, 210
BstAPI GCANNNNNTGC 3 cut(s) 89, 322, 444
BstAUI TGTACA 1 cut(s) 282
BstBAI YACGTR 1 cut(s) 498
BstC8I GCNNGC 8 cut(s) 70, 94, 399, 406, 454, 558, 562, 566
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 37, 571
BstF5I GGATG 1 cut(s) 384
BstFNI CGCG 8 cut(s) 39, 293, 371, 401, 408, 410, 452, 573
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 4 cut(s) 65, 316, 410, 556
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 8 cut(s) 69, 89, 322, 368, 407, 444, 453, 570
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 449
BstUI CGCG 8 cut(s) 39, 293, 371, 401, 408, 410, 452, 573
BstV1I GCAGC 2 cut(s) 176, 447
BstZI CGGCCG 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 173
BsuRI GGCC 5 cut(s) 11, 50, 156, 167, 267
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 2 cut(s) 37, 571
BtgZI GCGATG 1 cut(s) 425
BtrI CACGTC 2 cut(s) 139, 277
BtsCI GGATG 1 cut(s) 384
BtsI GCAGTG 3 cut(s) 23, 87, 202
BtsIMutI CAGTG 3 cut(s) 23, 87, 202
Cac8I GCNNGC 8 cut(s) 70, 94, 399, 406, 454, 558, 562, 566
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 4 cut(s) 65, 316, 410, 556
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 334
Cfr42I CCGCGG 2 cut(s) 40, 574
ClaI ATCGAT 1 cut(s) 173
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 3 cut(s) 20, 262, 283
CviAII CATG 1 cut(s) 484
CviQI GTAC 3 cut(s) 20, 262, 283
DdeI CTNAG 1 cut(s) 6
DinI GGCGCC 1 cut(s) 64
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EaeI YGGCCR 3 cut(s) 48, 165, 265
EagI CGGCCG 1 cut(s) 265
EciI GGCGGA 1 cut(s) 479
EclXI CGGCCG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 334
Eco52I CGGCCG 1 cut(s) 265
Eco72I CACGTG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
FaeI CATG 1 cut(s) 487
FaiI YATR 3 cut(s) 14, 440, 485
FaqI GGGAC 1 cut(s) 487
FatI CATG 1 cut(s) 483
FauI CCCGC 3 cut(s) 286, 464, 566
Fnu4HI GCNGC 9 cut(s) 40, 66, 73, 168, 190, 268, 384, 402, 436
FokI GGATG 1 cut(s) 391
Fsp4HI GCNGC 9 cut(s) 40, 66, 73, 168, 190, 268, 384, 402, 436
FspBI CTAG 1 cut(s) 239
FspI TGCGCA 1 cut(s) 555
GlaI GCGC 4 cut(s) 64, 315, 409, 555
GluI GCNGC 9 cut(s) 40, 66, 73, 168, 190, 268, 384, 402, 436
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 5 cut(s) 11, 50, 156, 167, 267
HapII CCGG 1 cut(s) 60
HhaI GCGC 4 cut(s) 65, 316, 410, 556
Hin1I GRCGYC 2 cut(s) 63, 210
Hin1II CATG 1 cut(s) 487
Hin6I GCGC 4 cut(s) 63, 314, 408, 554
HinP1I GCGC 4 cut(s) 63, 314, 408, 554
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 245
HpaII CCGG 1 cut(s) 60
HphI GGTGA 5 cut(s) 49, 112, 205, 367, 376
Hpy166II GTNNAC 4 cut(s) 202, 244, 367, 447
Hpy188I TCNGA 1 cut(s) 80
Hpy8I GTNNAC 4 cut(s) 202, 244, 367, 447
Hpy99I CGWCG 6 cut(s) 128, 140, 212, 221, 278, 313
HpyAV CCTTC 1 cut(s) 415
HpyCH4III ACNGT 4 cut(s) 124, 253, 322, 532
HpyCH4IV ACGT 5 cut(s) 138, 198, 210, 276, 497
HpyCH4V TGCA 7 cut(s) 28, 142, 192, 397, 447, 526, 580
HpyF10VI GCNNNNNNNGC 8 cut(s) 69, 89, 322, 368, 407, 444, 453, 570
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 5 cut(s) 138, 198, 210, 276, 497
Hsp92I GRCGYC 2 cut(s) 63, 210
Hsp92II CATG 1 cut(s) 487
HspAI GCGC 4 cut(s) 63, 314, 408, 554
KasI GGCGCC 1 cut(s) 62
KspI CCGCGG 2 cut(s) 40, 574
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 4 cut(s) 39, 80, 328, 511
Lsp1109I GCAGC 2 cut(s) 176, 447
LweI GCATC 3 cut(s) 84, 179, 384
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 1 cut(s) 239
MaeII ACGT 5 cut(s) 138, 198, 210, 276, 497
MaeIII GTNAC 3 cut(s) 55, 85, 211
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 225, 449
MlsI TGGCCA 1 cut(s) 50
MluNI TGGCCA 1 cut(s) 50
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 3 cut(s) 281, 368, 425
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 5 cut(s) 39, 72, 189, 518, 573
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 8 cut(s) 39, 293, 371, 401, 408, 410, 452, 573
MwoI GCNNNNNNNGC 8 cut(s) 69, 89, 322, 368, 407, 444, 453, 570
NarI GGCGCC 1 cut(s) 63
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 2 cut(s) 64, 507
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 3 cut(s) 55, 85, 211
NsbI TGCGCA 1 cut(s) 555
PcsI WCGNNNNNNNCGW 5 cut(s) 132, 204, 216, 270, 494
PkrI GCNGC 9 cut(s) 41, 67, 74, 169, 191, 269, 385, 403, 437
PleI GAGTC 1 cut(s) 239
PluTI GGCGCC 1 cut(s) 66
PmaCI CACGTG 1 cut(s) 498
PmlI CACGTG 1 cut(s) 498
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 225
PspCI CACGTG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 2 cut(s) 64, 507
PspPI GGNCC 1 cut(s) 334
PstI CTGCAG 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 3 cut(s) 21, 263, 284
RsaNI GTAC 3 cut(s) 20, 262, 283
SacII CCGCGG 2 cut(s) 40, 574
SatI GCNGC 9 cut(s) 40, 66, 73, 168, 190, 268, 384, 402, 436
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 225, 449
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 3 cut(s) 84, 179, 384
SfcI CTRYAG 1 cut(s) 26
SfoI GGCGCC 1 cut(s) 64
Sfr303I CCGCGG 2 cut(s) 40, 574
SgrAI CRCCGGYG 1 cut(s) 59
SgrBI CCGCGG 2 cut(s) 40, 574
SinI GGWCC 1 cut(s) 334
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 4 cut(s) 124, 253, 322, 532
TaiI ACGT 5 cut(s) 141, 201, 213, 279, 500
TaqI TCGA 3 cut(s) 173, 273, 348
TatI WGTACW 1 cut(s) 282
TauI GCSGC 7 cut(s) 42, 68, 75, 170, 270, 386, 404
TscAI CASTG 3 cut(s) 30, 94, 209
TseFI GTSAC 3 cut(s) 55, 85, 211
TseI GCWGC 2 cut(s) 189, 435
Tsp45I GTSAC 3 cut(s) 55, 85, 211
TspGWI ACGGA 2 cut(s) 491, 503
TspRI CASTG 3 cut(s) 30, 94, 209
VneI GTGCAC 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 334
XspI CTAG 1 cut(s) 239
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.