Rw7G002870

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000222
Physical Location & Seq
Forward (+)
2378276 .. 2387696
9421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G002870.1

Sequence Viewer

Length: 762 bp
ATGTCAAACACTCGCAAAGTAGCCATAGTCAGCGGCGGCGCAAGCGGCATTGGGGAGGCTACAGCACGCCTCTTCGCCGAGCATGGAGCATCCATGGTGATCATCGTTGACATCCAAGACGATCTCGGCTGTAAAATAGCTGAGTCCATCGGCCACAGATGCAGCTACGTGCACTGTGACGTGGCCGATGAAGAGCAAGTGAGGTCCATGGTGCAAGCAACGGTCGAGAAATTCGGACACGTCGACATCATGTTCAGCAACGCCGGGATAATGAGCAGCCAAGACCAGACCGTCCTTGACCTTGACTTTCCCTCCTTTGACCGTTTGTTCAACGTGAACGTGCGCGGCATGGCGTCGTGCGTGAAACACGCGGCGCGTGCGATGGTGGAGGGGCGCGTGAGGGGGAGCATAGTGTGCACGGCGAGCGTGGGAGCCAGCCACGGGATGGGGAAGAGCACGGACTACTGCATGTCGAAGCATGCCGTGTTGGGGCTGATGAGGTCGGCGAGCGTGCAGCTGGGGGTGCATGGGATTAGGGTGAACTGCGTCTCACCAAATGGGATGGCGACGCCGCTGACGTGCAAGGCGAGTGGGAAGGAGATGGCGGAGCTTCAGAAGGCGTATGAGAAGTTCGCGCGGTTGAGAGGGGTGGTGCTCAAGGCGGAGCACGTGGCCAAGGCGGTGCTGTTTCTTGCGAGTGATGATTCTGAGTTTGTGACTGGACATGATTTGGTTGTTGATGGGTCATTTGTTCCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

253

Amino Acids

26.91

Weight (kDa)

6.54

Isoelectric Point (pI)

25.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 6 - 196 6.5e-46 short chain dehydrogenase
KR PF08659 9 - 170 3.2e-12 KR domain
adh_short_C2 PF13561 14 - 248 1.3e-62 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000222)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01600 FvH4_3g23770 FvH4_3g23780 FvH4_5g15540 FvH4_5g15550 FvH4_5g15560 FvH4_5g36480 FvH4_5g36490 FvH4_5g36512 FvH4_5g36520 FvH4_5g36540
malus_domestica MD06G1187400.v1.1 MD14G1193800.v1.1 MD15G1376500.v1.1
prunus_persica Prupe.5G029400_v2.0.a1 Prupe.5G185600_v2.0.a1 Prupe.5G185700_v2.0.a1
pyrus_communis pycom06g16640 pycom06g16650 pycom06g16660 pycom06g16670 pycom14g16120 pycom15g33650
rosa_chinensis RchiOBHm_Chr7g0180541 RchiOBHm_Chr7g0180551 RchiOBHm_Chr7g0234561 RchiOBHm_Chr7g0238411 RchiOBHm_Chr7g0238441 RchiOBHm_Chr7g0238501 RchiOBHm_Chr7g0238561 RchiOBHm_Chr7g0238571 RchiOBHm_Chr7g0238601 RchiOBHm_Chr7g0242071 RchiOBHm_Chr7g0242111 RchiOBHm_Chr7g0242121 RchiOBHm_Chr7g0242181 RchiOBHm_Chr7g0242191 RchiOBHm_Chr7g0242201 RchiOBHm_Chr7g0242221 RchiOBHm_Chr7g0242291 RchiOBHm_Chr7g0242301
rosa_laevigata RLG00000000902 RLG00000000905 RLG00000000907 RLG00000000908 RLG00000000912 RLG00000005257 RLG00000005259 RLG00000035265
rosa_multiflora Rmu_co8004978.1_g000001 Rmu_co8126788.1_g000001 Rmu_co8332817.1_g000001 Rmu_sc0000429.1_g000001 Rmu_sc0000429.1_g000005 Rmu_sc0000429.1_g000010 Rmu_sc0000429.1_g000017 Rmu_sc0000429.1_g000022 Rmu_sc0000429.1_g000023 Rmu_sc0000429.1_g000030 Rmu_sc0001371.1_g000029 Rmu_sc0001428.1_g000008 Rmu_sc0001428.1_g000012 Rmu_sc0001428.1_g000023 Rmu_sc0001428.1_g000024 Rmu_sc0001536.1_g000009 Rmu_sc0001536.1_g000015 Rmu_sc0003321.1_g000025 Rmu_sc0003322.1_g000017 Rmu_sc0005690.1_g000011 Rmu_sc0005690.1_g000015 Rmu_sc0007123.1_g000006 Rmu_sc0023798.1_g000003 Rmu_sc0025040.1_g000003
rosa_roxburghii Rroxscaffold_3G00222860 Rroxscaffold_3G00222910 Rroxscaffold_3G00222930 Rroxscaffold_3G00222970 Rroxscaffold_3G00272800 Rroxscaffold_3G00272810
rosa_rugosa Rorug06G0433300 Rorug06G0433400 Rorug06G0433400 Rorug07G0312500 Rorug07G0312900 Rorug07G0313300 Rorug07G0313400 Rorug07G0313700 Rorug07G0314100 Rorug07G0314200 Rorug07G0314700
rosa_samantha Rh5DG534900 Rh6BG486700 Rh6CG490700 Rh7AG034600 Rh7AG035000 Rh7AG467300 Rh7AG467400 Rh7AG467700 Rh7AG467800 Rh7AG468100 Rh7AG468800 Rh7AG468900 Rh7AG469100 Rh7AG469200 Rh7AG469400 Rh7AG469500 Rh7AG469600 Rh7AG470000 Rh7AG470100 Rh7BG034600 Rh7BG034700 Rh7BG034900 Rh7BG438400 Rh7BG438800 Rh7BG439000 Rh7BG439100 Rh7BG439300 Rh7BG439400 Rh7BG439800 Rh7CG036300 Rh7CG036500 Rh7CG199800 Rh7CG485400 Rh7CG485800 Rh7CG486000 Rh7CG486100 Rh7CG486200 Rh7CG486600 Rh7CG486700 Rh7DG034900 Rh7DG035200 Rh7DG453900 Rh7DG454300 Rh7DG454400 Rh7DG454500 Rh7DG454600 Rh7DG455000 Rh7DG455100
rosa_wichuraiana Rw0G009440 Rw0G009460 Rw7G002870 Rw7G038750 Rw7G038810 Rw7G038850 Rw7G038860 Rw7G038870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 445
AccI GTMKAC 1 cut(s) 243
AccII CGCG 6 cut(s) 345, 371, 376, 396, 635, 637
AcoI YGGCCR 3 cut(s) 151, 183, 672
AcsI RAATTY 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 596
AcvI CACGTG 1 cut(s) 670
AcyI GRCGYC 2 cut(s) 353, 569
AfiI CCNNNNNNNGG 3 cut(s) 441, 445, 489
AflIII ACRYGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 3 cut(s) 181, 241, 579
AluBI AGCT 4 cut(s) 140, 165, 517, 610
AluI AGCT 4 cut(s) 140, 165, 517, 610
Alw21I GWGCWC 5 cut(s) 174, 419, 458, 657, 669
Alw26I GTCTC 1 cut(s) 553
Alw44I GTGCAC 2 cut(s) 170, 415
AoxI GGCC 3 cut(s) 151, 183, 672
ApaLI GTGCAC 2 cut(s) 170, 415
ApeKI GCWGC 3 cut(s) 162, 276, 514
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 5 cut(s) 41, 345, 376, 396, 637
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 3 cut(s) 109, 543, 550
AvaII GGWCC 1 cut(s) 204
BaeGI GKGCMC 2 cut(s) 174, 419
BalI TGGCCA 1 cut(s) 674
BbrPI CACGTG 1 cut(s) 670
Bbv12I GWGCWC 5 cut(s) 174, 419, 458, 657, 669
BbvI GCAGC 3 cut(s) 174, 288, 526
BccI CCATC 6 cut(s) 155, 376, 439, 556, 595, 734
BceAI ACGGC 2 cut(s) 435, 467
BclI TGATCA 1 cut(s) 99
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 553
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 9 cut(s) 34, 37, 46, 163, 277, 346, 372, 515, 572
BlsI GCNGC 9 cut(s) 35, 38, 47, 164, 278, 347, 373, 516, 573
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 204
BmgBI CACGTC 3 cut(s) 181, 241, 579
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 2 cut(s) 98, 149
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 265
BsaAI YACGTR 2 cut(s) 169, 670
BsaHI GRCGYC 2 cut(s) 353, 569
BsaJI CCNNGG 4 cut(s) 93, 207, 439, 675
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 445, 489
Bse1I ACTGG 1 cut(s) 724
BseDI CCNNGG 4 cut(s) 93, 207, 439, 675
BseGI GGATG 4 cut(s) 89, 111, 450, 567
BseLI CCNNNNNNNGG 3 cut(s) 441, 445, 489
BseMII CTCAG 2 cut(s) 132, 699
BseNI ACTGG 1 cut(s) 724
BseSI GKGCMC 2 cut(s) 174, 419
BseXI GCAGC 3 cut(s) 174, 288, 526
BseYI CCCAGC 1 cut(s) 517
BsgI GTGCAG 1 cut(s) 533
Bsh1236I CGCG 6 cut(s) 345, 371, 376, 396, 635, 637
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 3 cut(s) 153, 185, 674
BsiEI CGRYCG 1 cut(s) 225
BsiHKAI GWGCWC 5 cut(s) 174, 419, 458, 657, 669
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 3 cut(s) 441, 445, 489
BsmAI GTCTC 1 cut(s) 553
BsmBI CGTCTC 1 cut(s) 553
BsnI GGCC 3 cut(s) 153, 185, 674
Bsp1286I GDGCHC 5 cut(s) 174, 419, 458, 657, 669
Bsp143I GATC 2 cut(s) 99, 121
Bsp19I CCATGG 2 cut(s) 93, 207
BspANI GGCC 3 cut(s) 153, 185, 674
BspCNI CTCAG 2 cut(s) 133, 700
BspFNI CGCG 6 cut(s) 345, 371, 376, 396, 635, 637
BspLI GGNNCC 1 cut(s) 433
BspQI GCTCTTC 2 cut(s) 186, 446
BsrI ACTGG 1 cut(s) 724
BssECI CCNNGG 4 cut(s) 93, 207, 439, 675
BssMI GATC 2 cut(s) 99, 121
BssNI GRCGYC 2 cut(s) 353, 569
BssT1I CCWWGG 3 cut(s) 93, 207, 675
Bst4CI ACNGT 4 cut(s) 176, 223, 292, 323
Bst6I CTCTTC 3 cut(s) 77, 186, 446
BstACI GRCGYC 2 cut(s) 353, 569
BstAPI GCANNNNNTGC 1 cut(s) 414
BstBAI YACGTR 2 cut(s) 169, 670
BstC8I GCNNGC 9 cut(s) 43, 67, 216, 378, 424, 436, 480, 508, 512
BstDEI CTNAG 2 cut(s) 141, 708
BstDSI CCRYGG 3 cut(s) 93, 207, 439
BstF5I GGATG 4 cut(s) 89, 111, 450, 567
BstFNI CGCG 6 cut(s) 345, 371, 376, 396, 635, 637
BstHHI GCGC 5 cut(s) 41, 345, 376, 396, 637
BstKTI GATC 2 cut(s) 102, 124
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 2 cut(s) 99, 121
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 7 cut(s) 42, 45, 159, 377, 414, 423, 523
BstNSI RCATGY 2 cut(s) 472, 482
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 2 cut(s) 174, 419
BstUI CGCG 6 cut(s) 345, 371, 376, 396, 635, 637
BstV1I GCAGC 3 cut(s) 174, 288, 526
BsuRI GGCC 3 cut(s) 153, 185, 674
BtgI CCRYGG 3 cut(s) 93, 207, 439
BtgZI GCGATG 1 cut(s) 395
BtrI CACGTC 3 cut(s) 181, 241, 579
BtsCI GGATG 4 cut(s) 89, 111, 450, 567
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 9 cut(s) 43, 67, 216, 378, 424, 436, 480, 508, 512
CfoI GCGC 5 cut(s) 41, 345, 376, 396, 637
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 3 cut(s) 342, 535, 577
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
DdeI CTNAG 2 cut(s) 141, 708
DpnI GATC 2 cut(s) 101, 123
DpnII GATC 2 cut(s) 99, 121
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 3 cut(s) 151, 183, 672
Eam1104I CTCTTC 3 cut(s) 77, 186, 446
EarI CTCTTC 3 cut(s) 77, 186, 446
EciI GGCGGA 2 cut(s) 620, 677
Eco130I CCWWGG 3 cut(s) 93, 207, 675
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 596
Eco72I CACGTG 1 cut(s) 670
EcoT14I CCWWGG 3 cut(s) 93, 207, 675
ErhI CCWWGG 3 cut(s) 93, 207, 675
Esp3I CGTCTC 1 cut(s) 553
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 9 cut(s) 34, 37, 46, 163, 277, 346, 372, 515, 572
FokI GGATG 4 cut(s) 76, 98, 457, 574
Fsp4HI GCNGC 9 cut(s) 34, 37, 46, 163, 277, 346, 372, 515, 572
GlaI GCGC 5 cut(s) 40, 344, 375, 395, 636
GluI GCNGC 9 cut(s) 34, 37, 46, 163, 277, 346, 372, 515, 572
GsaI CCCAGC 1 cut(s) 521
HaeIII GGCC 3 cut(s) 153, 185, 674
HapII CCGG 1 cut(s) 264
HgaI GACGC 3 cut(s) 342, 535, 577
HhaI GCGC 5 cut(s) 41, 345, 376, 396, 637
Hin1I GRCGYC 2 cut(s) 353, 569
Hin6I GCGC 5 cut(s) 39, 343, 374, 394, 635
HinP1I GCGC 5 cut(s) 39, 343, 374, 394, 635
HincII GTYRAC 2 cut(s) 109, 244
HindII GTYRAC 2 cut(s) 109, 244
HinfI GANTC 2 cut(s) 143, 704
HpaII CCGG 1 cut(s) 264
HphI GGTGA 3 cut(s) 109, 543, 550
Hpy166II GTNNAC 6 cut(s) 109, 172, 244, 337, 417, 541
Hpy188I TCNGA 3 cut(s) 236, 615, 709
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 6 cut(s) 109, 172, 244, 337, 417, 541
Hpy99I CGWCG 3 cut(s) 245, 358, 571
HpyAV CCTTC 2 cut(s) 589, 610
HpyCH4III ACNGT 4 cut(s) 176, 223, 292, 323
HpyCH4IV ACGT 7 cut(s) 168, 180, 240, 333, 339, 578, 669
HpyCH4V TGCA 8 cut(s) 162, 172, 214, 417, 468, 514, 526, 582
HpyF10VI GCNNNNNNNGC 7 cut(s) 42, 45, 159, 377, 414, 423, 523
HpyF3I CTNAG 2 cut(s) 141, 708
HpySE526I ACGT 7 cut(s) 168, 180, 240, 333, 339, 578, 669
Hsp92I GRCGYC 2 cut(s) 353, 569
HspAI GCGC 5 cut(s) 39, 343, 374, 394, 635
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 99, 121
LguI GCTCTTC 2 cut(s) 186, 446
LmnI GCTCC 5 cut(s) 86, 405, 431, 607, 664
LpnPI CCDG 5 cut(s) 277, 299, 448, 503, 705
Lsp1109I GCAGC 3 cut(s) 174, 288, 526
LweI GCATC 2 cut(s) 98, 149
MaeII ACGT 7 cut(s) 168, 180, 240, 333, 339, 578, 669
MaeIII GTNAC 2 cut(s) 176, 715
MalI GATC 2 cut(s) 101, 123
MboI GATC 2 cut(s) 99, 121
MboII GAAGA 3 cut(s) 64, 203, 463
MhlI GDGCHC 5 cut(s) 174, 419, 458, 657, 669
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 8 cut(s) 49, 80, 195, 322, 382, 393, 492, 638
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 3 cut(s) 33, 517, 574
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 265
MvnI CGCG 6 cut(s) 345, 371, 376, 396, 635, 637
MwoI GCNNNNNNNGC 7 cut(s) 42, 45, 159, 377, 414, 423, 523
NciI CCSGG 1 cut(s) 265
NcoI CCATGG 2 cut(s) 93, 207
NdeII GATC 2 cut(s) 99, 121
NlaIV GGNNCC 1 cut(s) 433
NmeAIII GCCGAG 2 cut(s) 103, 105
NmuCI GTSAC 2 cut(s) 176, 715
NspI RCATGY 2 cut(s) 472, 482
PaeI GCATGC 1 cut(s) 482
PciSI GCTCTTC 2 cut(s) 186, 446
PcsI WCGNNNNNNNCGW 3 cut(s) 240, 575, 584
PfeI GAWTC 1 cut(s) 704
PflMI CCANNNNNTGG 1 cut(s) 445
PkrI GCNGC 9 cut(s) 35, 38, 47, 164, 278, 347, 373, 516, 573
PleI GAGTC 1 cut(s) 151
PmaCI CACGTG 1 cut(s) 670
PmlI CACGTG 1 cut(s) 670
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 2 cut(s) 169, 670
PspCI CACGTG 1 cut(s) 670
PspFI CCCAGC 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 1 cut(s) 204
PsrI GAACNNNNNNTAC 2 cut(s) 614, 646
PvuII CAGCTG 1 cut(s) 517
SalI GTCGAC 1 cut(s) 242
SapI GCTCTTC 2 cut(s) 186, 446
SatI GCNGC 9 cut(s) 34, 37, 46, 163, 277, 346, 372, 515, 572
Sau3AI GATC 2 cut(s) 99, 121
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 5 cut(s) 174, 419, 458, 657, 669
SfaNI GCATC 2 cut(s) 98, 149
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
SphI GCATGC 1 cut(s) 482
Sse9I AATT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 3 cut(s) 93, 207, 675
TaaI ACNGT 4 cut(s) 176, 223, 292, 323
TaiI ACGT 7 cut(s) 171, 183, 243, 336, 342, 581, 672
TaqI TCGA 3 cut(s) 225, 243, 473
TasI AATT 1 cut(s) 230
TauI GCSGC 6 cut(s) 36, 39, 48, 348, 374, 574
TfiI GAWTC 1 cut(s) 704
TscAI CASTG 1 cut(s) 179
TseFI GTSAC 2 cut(s) 176, 715
TseI GCWGC 3 cut(s) 162, 276, 514
Tsp45I GTSAC 2 cut(s) 176, 715
TspDTI ATGAA 1 cut(s) 204
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 445
VneI GTGCAC 2 cut(s) 170, 415
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 230
XceI RCATGY 2 cut(s) 472, 482
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.